0b587cf3ecbc0c7ee5e5138e464b0241 *DESCRIPTION
76b30ac69df3282da30f279a3df36805 *NAMESPACE
7e56d2f0676ee2f8a3314b0bf8135a12 *R/coi5p.r
7aeaf8f01ebc8520d8c460228f5be9fd *R/datasets.r
56b06950ffca04d053fdb42a1d261580 *R/deploy_PHMMs.r
f5b24196abd5f64c7eb07a72694ee942 *R/pipeline.r
d219382ad66b52b42f9a7799b78c8727 *R/print.r
4b564c8ecc74574d509f370ce1752437 *R/sysdata.rda
4b4c354d607fa8e2bc2ce2456c15650c *R/translation.r
bd5e79329276c81b0c9c45d0b7ca8a19 *README.md
ed4c43b63ab2213be77c69b191030958 *build/vignette.rds
ef3550853445be1090ee86feb2f85022 *data/example_barcode_data.RData
8c2c68273f9c3c852f9cd9c59f28751f *inst/doc/coil-vignette.R
1c6b46d4f9cf66fcfbc0622a7772a339 *inst/doc/coil-vignette.Rmd
fcb80e3f68a919117dddb082a3edded2 *inst/doc/coil-vignette.html
a622c4a8593ec2840d88a56525d4261b *inst/extdata/example_barcode_data.fasta
03fa7c0bf62dde384f6100decd9df91d *man/aa_PHMM.Rd
8f1bddd71c64b021e955bfffd27cade9 *man/censored_translation.Rd
04b4201c0b22a30dfcb09ba2057a9459 *man/coi5p.Rd
68c90a5b54e0222168c4ee2ffc54b958 *man/coi5p_pipe.Rd
7427ddceefc922e9ebef06b41c1ac1f0 *man/example_barcode_data.Rd
5f7d9cb6e088166250884d26f56c52e0 *man/example_nt_string.Rd
a01c6642a671f86c476369f24dffa8b8 *man/flatten_coi5p.Rd
d62812a0e2ca257a3768f8d24d7be4fc *man/frame.Rd
b70d636ed8d1d2a1434fee555c0b8fde *man/indel_check.Rd
c9c2781a5d9d239226acb922252a4f5e *man/individual_AAbin.Rd
b4ea779aec7cd04dbba7aeda9502ae32 *man/individual_DNAbin.Rd
937a0d87f5734126d91b36c294279e3d *man/ins_front_trim.Rd
18571c919d448ed9e88f0a8e4bfca544 *man/leading_ins.Rd
8721b881cb00b24e9c50ec14cfe8922d *man/new_coi5p.Rd
aed6cccd678247c3ce71394d0b6bbd3c *man/nt_PHMM.Rd
45d44eb080a85428df50dee815791437 *man/print.coi5p.Rd
6c00fbe9570877ab195cc6e05ff2375d *man/set_frame.Rd
1345b81a618cf1fc60db28ee89deb5a7 *man/trans_df.Rd
acfe8fbac1d1c9d4be9c5dd22e30bfef *man/translate.Rd
046351fd9b36aee1b1dfb7cf795c183b *man/translate_codon.Rd
7aaab25d6d245e64ed3532e3ba816d19 *man/validate_coi5p.Rd
9d433fbb9e2432e0be30360cab84a124 *man/which_trans_table.Rd
99c22256a10370e38bf9dc09d67f8403 *tests/testthat.R
19b12aff4c8d872b8c53e58bfaad01af *tests/testthat/test_badCalls.r
6383b6c3fadf2a05a34a2bfa306b2f1e *tests/testthat/test_delSeq.r
1fdcad8d0323afc93baf5f93b530fc9a *tests/testthat/test_goodSeq.r
aec472df95c6036988c344402a49e7df *tests/testthat/test_inSeq.r
dbfd70768a3dd8126ae5dc80044bac9f *tests/testthat/test_longSeq.r
7dcafa9fa3ddcbe6767bc6b014ccf224 *tests/testthat/test_print.r
f98003278df8d31175fab35a14baae96 *tests/testthat/test_shortSeq.r
cd0bf7eca379ef7f0590c449edec01fb *tests/testthat/test_sparseSeq.r
4a33e69c6600251e2e97d8afcb307d27 *tests/testthat/test_translate.r
dbc04f4231467c2e0ec5e708dc4d4d08 *tests/testthat/test_workflow.r
1c6b46d4f9cf66fcfbc0622a7772a339 *vignettes/coil-vignette.Rmd
