45ae14f7cd45e076e201f369117d2f71 *DESCRIPTION
bb8e15e887027e2f840c29065284da4c *NAMESPACE
06fc9388e8e0039e49065a0c543de5b1 *R/ancRECON.R
ccada179a566120a0448142b00e9b179 *R/convertPhangorn.R
3393e8afaace69415ea1ea2725ac97ad *R/corDISC.R
5dd95cf450672df1c6480a5007d2e948 *R/corHMM.R
540ccc036daac3f439fd01a09c516010 *R/makeSimmap.R
e243df23b73c4ccd67844e48f0b95c7a *R/plotMKmodel.R
3c723f095c37261722ec9b44cc9c5940 *R/plotRECON.R
759bdf572a7badec053a9475d27e3117 *R/rate.mat.maker.R
581fff5df9d8c78ded337a237cbcc202 *R/rayDISC.R
ad8af9a093de1b9f325edcb69ffe2f1f *R/testCode.R
9bc993fc5adc29f6e2766b77f4e0a4c7 *build/vignette.rds
b6961c6dd5095d1e485646c07ae8d48f *data/primates.paint.rda
100b928bab150149b4cb4d4d46dcbb08 *data/primates.rda
4a9b42f6e7d78c9949386dcdff63d79f *data/rayDISC.example.rda
aca5db7ec5ce459b606ffbd1aaa4bb6b *inst/doc/corHMMv2.1-vignette.R
e87a657e3b8cf3f1f181da9688246ee5 *inst/doc/corHMMv2.1-vignette.Rmd
c9424d8db717e6e65c8a30b5c2234082 *inst/doc/corHMMv2.1-vignette.pdf
1b0c4bc750620e2eefaf7e258c014133 *man/ConvertPhangornReconstructions.Rd
87184303d3be608ea1fcef935f14d21a *man/ancRECON.Rd
705bdca4f9b48ba8ee6e1cf2097217da *man/corDISC.Rd
f374a2bb5b9a6e7c7e45962b5dbb488c *man/corHMM.Rd
d33803a77734da2957e09db35e804ba7 *man/getFullMat.Rd
37cdb086c639f740dffadecb84861638 *man/getRateMat4Dat.Rd
2a880067117a3bc24601d8a236391994 *man/makeSimmap.Rd
feebf2b0cc2f325f86f6f311d533dea4 *man/plotMKmodel.Rd
ea6de2c957903e9a570d4cbc03719aca *man/plotRECON.Rd
e5f4e5e602dd8118bec3c20a91842218 *man/primates.Rd
6e02b04d9a65a7280fc4e65ac8c5572f *man/rayDISC.Rd
59c60786146a44865dd0f49dff4a7221 *tests/testthat.R
b1cff229bcbbab46503fd6589788111f *tests/testthat/res_old.corhmm.Rsave
35c2c5e7576504328991983a27b7f45f *tests/testthat/testlikelihood.R
e87a657e3b8cf3f1f181da9688246ee5 *vignettes/corHMMv2.1-vignette.Rmd
ecfe243d0dffd0ee564a1b174dc5158d *vignettes/corHMMv2.1-vignette.html
647c867d23675cd059e7f280ff117a86 *vignettes/randomBD.tree
260828b26bd8de2ded08da86edc3109d *vignettes/simulatedData.Rsave
