48a2da0cb253e6d267cdeb88147a22f9 *DESCRIPTION
d59e7bfb23c2219b9490724f96a19133 *NAMESPACE
b84a7c4763aa3092863b111e9d5a5e14 *R/classes.R
f51785aa30d2a4c96c88dfad099a7df8 *R/dMod.R
36b671975863d9c333661637ca6ea063 *R/data.R
89ea7b9565cd6b1a31c715a591afd947 *R/dataClass.R
4e260216741016f2b5e9335cef680c28 *R/eqnClass.R
29b4bad45a2c678ee5d2edd3ec3a0b1d *R/eventClass.R
cf63dd389927b6a449f0fb028d2d8d1e *R/objClass.R
0f8ac2b5d42bd13506ba17fef9e65f2b *R/odeClass.R
b11bdf7095175f318e090fcd5a047a59 *R/parClass.R
b3cc5bdd54114bf7f47c96e6884e8396 *R/parameters.R
adbc489fb96fcba80b7177fe67b85eb5 *R/plots.R
d0ede68e5c1e6c0963bebff17adbc980 *R/prdClass.R
c15ee69b4b96017a1633a75e774ae710 *R/prediction.R
90c132f17873051fcf60e74184039e6c *R/statistics.R
b81f1fa6a49b699d34aae9a398d57bb5 *R/steadyStates.R
2cdbabf0c57eee038fa0f61868cb3229 *R/strings.R
17a2a35208a8b763eaa8c2577ed37f5b *R/symbolics.R
306b322cc192f7c9ae53d290e9518cc3 *R/symmetryDetection.R
407f9e98ad8518ae68510060a99817f7 *R/tools.R
4248fcc4ca0a6325b04f205013b7e4ce *R/trust.R
4576c41a001f3c57a856186cf12603fb *R/trustL1.R
3b398f33a1fa0bcc9481130953a927c3 *build/vignette.rds
ecb2795a187853928c97d1900700e26b *data/jakstat.tab.gz
e31ca66d47605160602ec8ce003bf77f *inst/CITATION
f1fb5e05db9bcb9c98166cb8bfdf13eb *inst/code/buildSystem.py
278711e94d60fd50a90da8e7d5ad849c *inst/code/checkPredictions.py
0e33001383d92e70109a8241d28ec1bc *inst/code/extendObservation.py
ba533c99968acbfe66615702f2d04eab *inst/code/functions.py
b84ccf6fd930d2cdd01f7023d6d0b1f9 *inst/code/functions_obs.py
f0928c6512949f5fbb3341e2f7f1f348 *inst/code/polyClass.py
7ae62ed6ff10030e45a1e2cdbd16d880 *inst/code/quasiSteadyStates.py
3491510b1e1deefdb5c1fdcc98f0814a *inst/code/readData.py
1880afcf96e28e4652f8bd604258b835 *inst/code/sbmlAmiciDmod.py
f215e44f34d755f219fe9193076ae0a7 *inst/code/steadyStates.py
64e4fefa165f01f0d4a862ee46251ab5 *inst/code/symmetryDetection.py
63187322c48edfdc736ba6e88039e8d6 *inst/doc/dMod.R
25d57c3f979041c2472a3ded699a4c01 *inst/doc/dMod.Rmd
9809da8a2c876ba981d19151482d0724 *inst/doc/dMod.html
5547bbc7fbb20c9eb3f911f14bee3484 *inst/examples/datalist.R
9b943a671526944724d8fc5b31b9e872 *inst/examples/define.R
4387f819f459b9c9ce7c58a8e73175a8 *inst/examples/eqnlist.R
198813678ea7d998857973eb7500d973 *inst/examples/eqnvec.R
dd0fd5c284336f6d65258ce188aaa107 *inst/examples/equations.R
171ad5a64d12f3d5968a1cefd80cfedb *inst/examples/errmodel.R
f0fe572c8a22ace926f849bf2c8c25f5 *inst/examples/events.R
d220cf29b4dd51ce920c88b2341cc6e6 *inst/examples/normL2.R
7de751e1a9f43b8d2a24afaa74ac7938 *inst/examples/objective.R
08434c370bf8d29ea186581de0515a00 *inst/examples/odemodel.R
3d1234ed88be1d2aa6d40efe582e66ae *inst/examples/parlist.R
cb97468e7f117ef23ca4b41a1bc96fb1 *inst/examples/parvec.R
c2815908d3e1625c1172f4fb1da6b256 *inst/examples/plotting.R
73bfd601f178429d86ddb8696a7888d7 *inst/examples/prediction.R
4fe40eb20a33c94044f53a93f543ebcf *inst/examples/profiles.R
7536eaf899f7170b1a0ba0439121d5cb *inst/examples/steadystates.R
c623788a92d82652f6ba64ea50039a2c *inst/examples/sumdatalist.R
2ad7041794613bc7ffdad3714df6f46f *inst/examples/test_LOQ.R
6c5951d7f6734e9dd38084e644c7ecdc *man/Id.Rd
ad4ebd7a9711055900aee981ad98f157 *man/P.Rd
360c3179393a997722a3f58eb57e201c *man/Pexpl.Rd
d0f5d4580a4618f44303085169ee3f11 *man/Pimpl.Rd
9b774e630b4cf42fe63566b23c9bfddb *man/Xd.Rd
9fd8066877d31be4399c5af240786377 *man/Xf.Rd
7f72ecb989e9034477536701cfa2bbb1 *man/Xs.Rd
b61293140c3d940a00638612ffba01e2 *man/Xt.Rd
71b4c334b7c04a2c1f0f09d95d096a05 *man/Y.Rd
ab4c8ccea1038d2f6e0fe1ffee02669d *man/addReaction.Rd
36fbbeca32f2ee5a12b2fe52a0e6b195 *man/as.data.frame.dMod.Rd
6650bef59181149fa541db4f53f4541f *man/as.data.frame.eqnlist.Rd
26803af40e85e34c76e8dcd567ff8e08 *man/as.eqnvec.Rd
9e490a68fae31864d2c83a22050e8268 *man/as.eventlist.Rd
c64ab8017b8c6a593cfecc8e719bd2df *man/as.objlist.Rd
e8f4cddbc0efecc243aab96fa4d82ab0 *man/as.parframe.Rd
3931bf770799e3a22ff49f13accb73c2 *man/as.parvec.parframe.Rd
af5bb207abe4f643c12fb1de8b3c0a1a *man/attrs.Rd
5f23b4c6402f220d5a813b7138da747f *man/blockdiagSymb.Rd
f644f1dd0b4b84dea45adcde7f6f845a *man/combine.Rd
91444ebeada05be99df8d443574bef97 *man/compare.Rd
bb343e1590f2d0581741d1253ac14dfb *man/compile.Rd
539fef9c7729c7c17f1e1ef1695ac5a9 *man/confint.parframe.Rd
b6371ed4ab719030cd50abe9e759b214 *man/conservedQuantities.Rd
c7152648ece9158e27d5e9e32b5f6d8a *man/constraintExp2.Rd
7137a7642388b4e69e9f0d393058f9ef *man/constraintL2.Rd
17936e3e86b4ca38a2f7a618eaa8d8fc *man/controls.Rd
28b13ca70dd2f6882a3c7061ba1c533b *man/coordTransform.Rd
9e4dd1d5b50bf9ec397d82d847a043c0 *man/covariates.Rd
7dcb84d702c40f5bae6236c3dfde35fb *man/datalist.Rd
18b5d221bcd836e49cfd91ec37c95b83 *man/datapointL2.Rd
2d7a770a60ec1135d484297f995a68f3 *man/define.Rd
e9485889b6ed830d455aaa81739e9c76 *man/dot.Rd
ae40c7598fa2b88a757e7cfb9b5a4e20 *man/eqnlist.Rd
0476b019c89e8a574d2ee9ee049c7908 *man/eqnvec.Rd
998b603116c22286ee6165c2796db406 *man/eventlist.Rd
948093e74d80dc134f567defadff4e86 *man/expand.grid.alt.Rd
2d9c005a582875af460fe7e23f5fea09 *man/fitErrorModel.Rd
58f2fb03d2ff7064e1a44f017cb663d7 *man/forcingsSymb.Rd
e9d2023fa52a5078ae530c5985adc458 *man/format.eqnvec.Rd
bda7f653ff136344304107f8c961a6d7 *man/funC0.Rd
6a1e95b7272e90fea87cac7f36a90132 *man/getCoefficients.Rd
2fb75e3618e534176c0cac2795949283 *man/getConditions.Rd
c55b44e72518d59771f62abca19a4b3d *man/getDerivs.Rd
7157e9ab99d0512ab6132e32bf7008d2 *man/getEquations.Rd
b5a159ff4c6f24ff7046ae1339488a54 *man/getFluxes.Rd
5193deea12ff2ef8bb06afbf8b8ef59f *man/getLocalDLLs.Rd
19a46774e185451017425f9582a0267d *man/getObservables.Rd
e0682451cf5aef1a118dac367cbc164d *man/getParameters.Rd
eaf382c1745e54ac7471390c98db6b9f *man/getReactions.Rd
e9aace82aaa1243b46d4b577719409e2 *man/ggopen.Rd
837a273eaa6c5369b078a6c1019016ed *man/grapes-.-times-grapes.Rd
e773507005ea2aea00dc972ab0986a73 *man/jakstat.Rd
a1c9c8d757ec04197cfcc3ad2d266691 *man/lbind.Rd
799ac3b170ec16dac80dc51d605a37af *man/load.parlist.Rd
2fc60e12683c7e20a931aa88bafe6c50 *man/loadDLL.Rd
d68812f62db29dc24ed2c676c163f57f *man/long2wide.Rd
c4798c44668e2640374f57843b2f7e40 *man/lsdMod.Rd
bd659135cc4934a6720b1d5cb886a952 *man/match.fnargs.Rd
1bf8e618a0795e7da4d7b151c07388bd *man/mname.Rd
480dccf257b3b3a0974fe5c9c6cf9758 *man/modelname.Rd
4ee97fdabda75f2fbf2204a90491a122 *man/msParframe.Rd
48ba3f6de9b062fa4cc3a2c6d63d705f *man/mstrust.Rd
de0b5cf5a91d1c4c63259dd617d71951 *man/nll.Rd
b8151a37e60f70fd68eb6a7ade678386 *man/normL2.Rd
c187235dc3ba6d93f161fa6c8c640aa1 *man/nullZ.Rd
ccebb7124c9bc38d982d2fd036685f79 *man/objframe.Rd
b65641ea15ad71a5a1e2c19d0c7b551b *man/objlist.Rd
797f18aa33d1e0ecfd0d26c8b84281b9 *man/obsfn.Rd
31e01b1e7ef66970adbfd89f0ab04fab *man/odemodel.Rd
d04e872c9cc58488099e9b736333d7a0 *man/parfn.Rd
7888fcda8563189174cf9a0b2dee1237 *man/parframe.Rd
e64806f2682271814a8ef225457b530a *man/parlist.Rd
800029e59b382134aec5cc2ea2a3a3e9 *man/parvec.Rd
f15940b3c8ac90bd34a5d80044fc0f39 *man/plot.datalist.Rd
3d5b615c8ce8d9cc6530b67bf67858b7 *man/plot.parlist.Rd
524732856069e12d89c802d9dd45df0d *man/plotCombined.Rd
7a3afb7ec78a570353bb216b671902d8 *man/plotData.Rd
758a1622b016268bbcdd00ba067e66ac *man/plotFluxes.Rd
6c61c84f3c8720145ed1a735200e95e5 *man/plotPars.Rd
b2eb72c732c9aa67e76ed2c07814729f *man/plotPaths.Rd
6990b1aa67958a03e589a1e75a0ecf4a *man/plotPrediction.Rd
ed4e2e0d53a91a250de889e076ef5467 *man/plotProfile.Rd
694ba17169160018366fe7cf17939b91 *man/plotResiduals.Rd
57de8cba9f20717e4a9cbd943e6ba358 *man/plotValues.Rd
3fde0586b088fcffbbeed173b6780827 *man/plus-.datalist.Rd
cc13f8d62ef779968d5348ae061098be *man/plus-.fn.Rd
751ff3384e89bc30c5879ce87d314d2e *man/plus-.objfn.Rd
ab2c89f52bcb9b47cb51ef8f76bae212 *man/plus-.objlist.Rd
83d4d9a0555818759c75fb75070a0a2d *man/prdfn.Rd
da034e32026940b7f092ba6e9a84e6de *man/prdframe.Rd
0e21a3c0b9c9ab03adb93ba23ac20483 *man/prdlist.Rd
d0fcc5dc5bb10abb17efc59b340f5ffe *man/predict.prdfn.Rd
3356f7f7bb6814e19e764de995d08b28 *man/print.eqnlist.Rd
174002c9c74ad3914a2dc8edd907e8b8 *man/print.eqnvec.Rd
66581d27c13b372e643f504f910781e1 *man/print.parfn.Rd
0c732b1721b619e8ccafd63186d6df05 *man/print.parvec.Rd
acab6d624109521d3e0683a90f0770f1 *man/print0.Rd
14241b297f981abf99e311309e28ffa2 *man/priorL2.Rd
77cabfd2519aeaf9bfe2b1932dd27e9f *man/profile.Rd
ae7072647e498a87983aa03a12231098 *man/progressBar.Rd
8f9f0f0099d1e0b1951322f4ae1c2a39 *man/python_version_request.Rd
05f151f374c18ae23ff8a90bfbea3cf0 *man/python_version_rpython.Rd
2c5fd2da4ab93ea7d1b2f92fb68aefce *man/python_version_sys.Rd
66a14082b0d640e93438088aa1d5cfcc *man/reduceReplicates.Rd
075ad1117ec9bd762866b816aa4627c1 *man/repar.Rd
a3c93ec0ba5b04d344b9e242da905977 *man/res.Rd
5f3fab8cc0766e458b369cf5b352aa49 *man/resolveRecurrence.Rd
d143d4258982c8353e7473209bc00a0a *man/rref.Rd
87ca04c5e0dd87ff214ca9dfeddbd0d2 *man/scale_color_dMod.Rd
9516cd047ccefde2addaf97d19a27f08 *man/scale_fill_dMod.Rd
7d5d91ba60e02e8c859ee25fa5918b4c *man/stat.parlist.Rd
178beb4a82b3bc00c6c96b0ab4f39bf6 *man/steadyStates.Rd
bdaf73dd55476bf61deaee8795d9683a *man/strelide.Rd
cd2fb953597872725bfba51be1082d8f *man/strpad.Rd
5ff818b52a7895ed14f4ced37eadedb2 *man/submatrix.Rd
d87285a0eb7f46ed46754a8d7efb69fb *man/subset.eqnlist.Rd
8b9dec4ce8bf698f55f1abc65ed842ea *man/summary.eqnvec.Rd
4df2dce418008080e855e8058e58427d *man/symmetryDetection.Rd
ebedf9a8aa2bb2c6f3c95cf8acaadaaa *man/theme_dMod.Rd
aa50f27d084e5abbf4cb3ff77ba30cf4 *man/times-.fn.Rd
c5ba387b2e5ce8172d819538d068f530 *man/trust.Rd
f3e02532f20e71ef50e6867f14f4810f *man/unique.parframe.Rd
a07bf6408f3c105f3fc6ac7871bd096a *man/wide2long.Rd
48d7e5eed21bed72c5d07e54efa6d5d4 *man/wide2long.data.frame.Rd
af001de16d487efe2b2413165b3fdd5e *man/wide2long.list.Rd
21c038308aeddbe456c5224cc5349967 *man/wide2long.matrix.Rd
eaced038531b98704c6c2e0700dcd795 *man/write.eqnlist.Rd
1809b7778e2f408cdc73507caea4d01d *man/wrss.Rd
25d57c3f979041c2472a3ded699a4c01 *vignettes/dMod.Rmd
0504d3984716f94052e3a92a2c5833e6 *vignettes/pathway.png
