9d8513ea675ba72898e3cc34d9e2f6f1 *DESCRIPTION
31bbf5b0873f4af9dc1eccfee9e967dd *NAMESPACE
4302f61348e0c9a517adfde82e4987d3 *R/deisotoper.R
0705ac78c1ff40160415363c07fda193 *R/onAttach.R
fa8424676cc1054dc73353200be088b3 *R/onLoad.R
b51b50f8f6439a48c51f8d924e5704d8 *README.md
28b312c0cec3e56c8207ea44eb88c41d *build/vignette.rds
5a4c7e6ca90185050031af21fe533dd1 *inst/doc/deisotoper.R
e5827e48c31daf63513dd9042e4e25e3 *inst/doc/deisotoper.Rnw
71ef828fd29a8f7a347f42bca11e219e *inst/doc/deisotoper.pdf
b1e01b26bacfc2232046c90a330332b3 *inst/java/LICENSE-AL.txt
1cfd54eaf35531cd95ba056ddbc536ea *inst/java/LICENSE-EPL.txt
e7ee7901838fed86cdcd56a84eb2df07 *inst/java/LICENSE-LGPL.txt
d612f2ef67e71699ee83a28f69c19e2b *inst/java/LICENSE-README.txt
6bd7c16f7df4a845b28ef26c25a5bb1a *inst/java/deisotoper-1.0-SNAPSHOT.jar
e15075deb1b60f5951d017ee85456356 *inst/java/jgrapht-core-1.0.1.jar
a9253ed9f3c84467defd97adee079a81 *java/Makefile
11720ee963b2a2220dfb575ed744025e *java/deisotoper/deisotoper.iml
6ceabb68ee9fc07ddd263d4fa49bba0b *java/deisotoper/pom.xml
9d5abdb2f10c391d76a56c3e87611c8e *java/deisotoper/src/main/java/ch/fgcz/proteomics/R/FeaturesBasedDeisotoping.java
d004d5568eba43098e0af7e5013eca8b *java/deisotoper/src/main/java/ch/fgcz/proteomics/R/Utilities.java
019ddb2844c8dcb6e221c2a22a5a23f4 *java/deisotoper/src/main/java/ch/fgcz/proteomics/Version.java
3ce7ed49108a06255b5c04d031ef184e *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasure.java
6403164b429d5f5b41c134e3858f675f *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSerializer.java
2362180913c18a4f9a6271b5ccb4c0c3 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSummary.java
2fd1c89fd3421883da647f6bc9197066 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrum.java
823492de22f5245054a3508dffbabf5a *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrumMetaInformation.java
b9ca2205430a47220a26d912dae7c7fe *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Configuration.java
5bd58f92632fa3a0391899e60222796a *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Connection.java
686188da1018e1c255bc900d363a7b36 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Deisotoper.java
18fb4936e77bc9b2242cbb0748a3fb32 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/DeisotoperMassSpectrumAdapter.java
e0baedc609135ce486224d5320b1944b *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicCluster.java
b508fc5b48fb903ea1d0ba4c07b7d5bf *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicClusterGraph.java
24c964b0a42c5c0cb26f6a30921c13c9 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSet.java
fbf697309b070cff8cd3f122a3598e08 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Peak.java
4c8c90f0ded79c68dc692cbc7da19516 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/PeakList.java
ea75c5429f3be9c7e48dedf8b5af0722 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Score.java
80f1a8a3ed11df4b8c1a8893eff34d77 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoreFive.java
ca7af658f3eb24d096f8918a4984830c *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoringConfiguration.java
fb49ea6efcd77890c74817b29f763858 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadMGF.java
756e98c88a4149e54399c306313c4733 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadStdIn.java
22b3f12aae9c06555e6d3c8f07767d58 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteMGF.java
50578d47ff055c7367383d5ebcfa126e *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteStdOut.java
c3a022859894cf06a8dc2b470b824385 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Convert.java
afe2f617e04a93f0cb71d780e48cdd14 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Deisotoper.java
174054a94ccfb613a189047810bfb054 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Mspy.java
883f8337b7ac03f36b91f5af6bbf22e8 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peak.java
8b83ce401d7e1b8c615ef6920fce5a5f *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peaklist.java
0f7d8b30e95d6a496803b40825e88023 *java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/FindNearestNeighbor.java
f7177131c6799a1d88a8959c3cd9371e *java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/MathUtils.java
098fe3ad2edc62bbdf7a54869b851b09 *java/deisotoper/src/test/java/ch/fgcz/proteomics/R/FeaturesBasedDeisotopingTest.java
0be45b47cf84d8aca4b77303476aca83 *java/deisotoper/src/test/java/ch/fgcz/proteomics/R/UtilitiesTest.java
e7b88fc2d4fa12b06d1042883817e123 *java/deisotoper/src/test/java/ch/fgcz/proteomics/dto/MassSpecMeasureTest.java
32acff0fd3fc46bd4075e7a852e09b24 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ConfigurationTest.java
4c3320e8dfc9d04b321d7cfb5c3308a6 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/DeisotoperTest.java
845a15af989ddfe41ddebb09d1b7e1dd *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicClusterTest.java
067af7e7b23feace48e9dceb3bc23370 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicSetTest.java
dd3e1708ff4ca28f4b1ddfe81751d366 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ScoreTest.java
4fccba4f92ae5290fc0758500f81f42c *java/deisotoper/src/test/java/ch/fgcz/proteomics/mspy/TestMspy.java
0bef7cf298df4e8caf65edbbc7883209 *man/deisotope.Rd
0dfc36fc36d0e7b6ef35eee8ee9379f3 *man/deisotoper.Rd
1488efbc9ae94d4e98d5092bd7eccc4a *man/findNN.Rd
ddee421c28c824590a41eca79a4e2b8c *tests/testthat.R
7c2b4c9b67e21ab03dc92a3be571f84b *tests/testthat/test-deisotoper.R
5befd070bdbf124eb39a03fbf013ce4f *tests/testthat/test-findNN.R
e5827e48c31daf63513dd9042e4e25e3 *vignettes/deisotoper.Rnw
4d042191dea1ae6d1b55c615fc51843f *vignettes/deisotoper.bib
