950f941eb0305cb8cfc43fa1fadd62e0 *DESCRIPTION
31bbf5b0873f4af9dc1eccfee9e967dd *NAMESPACE
59a99a9649ec6304511fc2b7db9154d3 *R/deisotoper.R
7381a95be159b5d06f5f5ba0a9aab3ba *R/onAttach.R
eb8c390f30e75788775160aad31610ba *R/onLoad.R
e4f70754a00dcd15c815e5bff48686a1 *README.md
8aa062530b36f6bf45d2c528ad577756 *build/vignette.rds
5a4c7e6ca90185050031af21fe533dd1 *inst/doc/deisotoper.R
2a110f834460b5f0f7ffd190605c0526 *inst/doc/deisotoper.Rnw
1cd70f20959185b0a41ecd64b515eb6a *inst/doc/deisotoper.pdf
0d6944661bc011cf836f7911afb00649 *inst/dot/cc
891d1fbff1734c4d82fef998f5829ab1 *inst/dot/cc.ps
0a9f2645442d1f32851d6b413d5730c8 *inst/dot/cluster.dot
b1e01b26bacfc2232046c90a330332b3 *inst/java/LICENSE-AL.txt
1cfd54eaf35531cd95ba056ddbc536ea *inst/java/LICENSE-EPL.txt
e7ee7901838fed86cdcd56a84eb2df07 *inst/java/LICENSE-LGPL.txt
d612f2ef67e71699ee83a28f69c19e2b *inst/java/LICENSE-README.txt
849f2ec530f1f05533eda2eee23a818c *inst/java/deisotoper-1.0-SNAPSHOT.jar
e15075deb1b60f5951d017ee85456356 *inst/java/jgrapht-core-1.0.1.jar
20099d496d20a1f43ee8b098436a06ce *inst/shiny/diff_psm/global.R
ec3a56b6cfc55b949cf6faa5696f15c6 *inst/shiny/diff_psm/server.R
f4ade5b6448278ea2456b8c4b68fcbd7 *inst/shiny/diff_psm/ui.R
e813329c3214d41c35e86a98bf75a41a *java/Makefile
59c4249078c9a78c3e59c504af3b193e *java/deisotoper/deisotoper.iml
2b96d021190ddacfe312d5930f682219 *java/deisotoper/pom.xml
ea005c2f6abc9c877edd4ab6efdaa0b9 *java/deisotoper/src/main/java/ch/fgcz/proteomics/Version.java
26fca6bc5f71803a7e891c8df967b17e *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasure.java
71fcdf2067d125cf4f4a81031ab3cc5f *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSerializer.java
f8c6d8c69f6267408543071d579ef6f9 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpecMeasureSummary.java
19c74402e958f6f2956a8f8f29ac7066 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrum.java
ba8c15e388821ba423e0d20cd046a959 *java/deisotoper/src/main/java/ch/fgcz/proteomics/dto/MassSpectrumMetaInformation.java
0003bf5bf286548304999dae39a181cb *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Configuration.java
cbea156816d444f47a61cdda9d89d981 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Connection.java
ca2e66433104c61900e0c3204a298d31 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Deisotoper.java
54a6d25a75bde3605927f0a2ff265c03 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/DeisotoperMassSpectrumAdapter.java
1a9db5ba1293e04d24ea2dc83685d445 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicCluster.java
4eb14e6597aad31a0742f2a058ed4aa6 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSet.java
655c466fdf617772e290633d12b1b0bb *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSetGraph.java
57a92b1cb413dfe9545eeaa89013e1a0 *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/IsotopicSetGraphToDotGraph.java
ebc8a852c26814080b781b66d394167a *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Peak.java
ed5b26d18a6a18008ea9897d347c9cbe *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/PeakList.java
30a793f144a04e51dfbdcd78f258488d *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/Score.java
845c895f252737b748cc24e6bf52040f *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoreFive.java
c4bd394f4df216d41d909225167c6a8a *java/deisotoper/src/main/java/ch/fgcz/proteomics/fbdm/ScoringConfiguration.java
ddabfffae7cbeade5c64ba7151026eea *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadMGF.java
d33d54a7b2b34830155cc8ed7fcae4c0 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/ReadStdIn.java
0fa9101ec2a2a7bd01438348b61f7b9a *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteMGF.java
32cd933b4b49581b1030a85ba31bdf23 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mgf/WriteStdOut.java
470abd377f321402c5c8186993ae4434 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Convert.java
c15c90ced4dabb5918d349fdf05a2d7c *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Deisotoper.java
6a6b77158b4d20887ef3c2fc162f7d72 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Mspy.java
a6d96833d3765767002e14a298a21d47 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peak.java
c1c62ab8aac7b61413fedadf78b62304 *java/deisotoper/src/main/java/ch/fgcz/proteomics/mspy/Peaklist.java
ece681381e1aaa93099dd37f063d2cac *java/deisotoper/src/main/java/ch/fgcz/proteomics/r/FeaturesBasedDeisotoping.java
1f592b267e2665880bf84a0eb733f639 *java/deisotoper/src/main/java/ch/fgcz/proteomics/r/Utilities.java
8106452b3c8d74cf6e4e08f47454ba4f *java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/FindNearestNeighbor.java
0476d3dce5e2f03bcac84ee2ffe38dce *java/deisotoper/src/main/java/ch/fgcz/proteomics/utilities/MathUtils.java
a4d33b6c0ca5e899c461ccef1e5c2208 *java/deisotoper/src/test/java/ch/fgcz/proteomics/dto/MassSpecMeasureTest.java
f1c5cb0f54323b645cd219551d7862b4 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ConfigurationTest.java
48893c3c9dd7a6cc07cbb89d3fe26dac *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/DeisotoperTest.java
c8c50317184b11fe90d9823f9e037d33 *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicClusterTest.java
270c10fc659ff404aaaeceb4aad3be7b *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicSetGraphTest.java
38d34c16be0eb4cafefd5b649831e8cb *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/IsotopicSetTest.java
d7c755166b183e034ac428fa081694fb *java/deisotoper/src/test/java/ch/fgcz/proteomics/fbdm/ScoreTest.java
652cbf41d26bdb96f3ac2191d09e6098 *java/deisotoper/src/test/java/ch/fgcz/proteomics/r/FeaturesBasedDeisotopingTest.java
b1d48378c893a68701620ffe62c041e4 *java/deisotoper/src/test/java/ch/fgcz/proteomics/r/UtilitiesTest.java
40e79d19b331faaaa5b86d720d138bd4 *java/runSonarcube.cmd
0bef7cf298df4e8caf65edbbc7883209 *man/deisotope.Rd
0dfc36fc36d0e7b6ef35eee8ee9379f3 *man/deisotoper.Rd
1488efbc9ae94d4e98d5092bd7eccc4a *man/findNN.Rd
ddee421c28c824590a41eca79a4e2b8c *tests/testthat.R
8d101d3075025abfa70d81d26fb4b1d1 *tests/testthat/test-deisotoper.R
31381633fe3e6aab3b5f84cdaec1553b *tests/testthat/test-findNN.R
2a110f834460b5f0f7ffd190605c0526 *vignettes/deisotoper.Rnw
4d042191dea1ae6d1b55c615fc51843f *vignettes/deisotoper.bib
