84935333eba9be6b4335ae3e244dcb6e *DESCRIPTION
997654d7ffe5e9f9154db513d4d02baf *NAMESPACE
fda859e1706d7a9292eee749e8abd823 *NEWS
4221498aeb2b94ba7f446eabedbe7714 *R/dataDoc.R
2f179260786208e589ec80030a065201 *R/dynrCook.R
e87fc19090c94812514322400888a6c2 *R/dynrData.R
1f39fa613bcfca8f1adf8884cd42b9bb *R/dynrFuncAddress.R
06639b29cc62893211d3e3e2cfc6d104 *R/dynrModel.R
637c4c3256565356899163388fd525bf *R/dynrModelInternal.R
dac6986798b0f9a6ba73595cb15386f0 *R/dynrPlot.R
9c0e9c13a5b5d30c34f93db9ea6e084f *R/dynrRecipe.R
1f3cec2b6753e3fb71fabfafa136b524 *R/dynrVersion.R
63a2b3d53811033e637db22f83164071 *R/dynrVersion.R.in
210b1dd421801ed600cbb7f2a7d6be78 *build/partial.rdb
c3cded853a2388ad53569a7105d1c1e3 *cleanup
2a2f823b986ebabb8a524a946d960277 *configure
da1b0467b7dac8a307208102b79b3e02 *configure.win
e1d2ff43286dee7f464101396c932501 *data/EMG.txt.gz
e8b9d4f7ab50aec3975d1ae9b59d9582 *data/EMGsim.txt.gz
af5cb503fed1ec1fd242d24b201db992 *data/NonlinearDFAsim.txt.gz
5c819fad788836def5b49f498e543be0 *data/PPsim.txt.gz
eef06812b7ab1a3587e2fe1767d2b110 *data/RSPPsim.txt.gz
dc54c87d30d39599cc9ebd51fc3ef7f9 *data/datalist
9ec0c30f871d057a6106503ce2bdaa5e *demo/00Index
2d0108fe01f596f9afe1869a1bc4fb14 *demo/LinearSDE.R
ff45de336f5d86fb6e007f1bb6985795 *demo/NonlinearODE.R
ff93f37abb9dd04d064a8ac3c0aa9497 *demo/RSLinearDiscrete.R
f1153356bd55ee0270f5139a0c166406 *demo/RSLinearDiscreteYang.R
027c18b51755dbbcdaf3345ffbd4ecf7 *demo/RSNonlinearDiscrete.R
e89dd4a665608916f5c574e093f95643 *demo/RSNonlinearODE.R
e71266093722618174b4751cab01078f *inst/models/slow/MCTest.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSODEmodel.c
d697566c3d23b29fd917fe49db8ca727 *inst/models/slow/RSODEmodel2.c
8ef3d488a81bce4d8471577d544253fe *inst/models/slow/RSlinearODE.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSlinearODE.c
dfd436323879f09fb9c8ef44169d4d07 *inst/models/slow/data/Model2T1000n20batch1ODETrueRegimes.txt
7a3f661bf7ae7f53960740e634a7a329 *inst/models/slow/data/Model2T1000n20batch1ODETrueStates.txt
a8acec45b1d20fee4a868eebc9fce66d *inst/models/slow/data/Model2T1000n20batch1ODEsimData.txt
3b205070cd03ebac5f9f76bd89837a07 *inst/models/slow/data/Model2T1000n20batch2ODETrueRegimes.txt
21cf61480f4e0db723407e793184a536 *inst/models/slow/data/Model2T1000n20batch2ODETrueStates.txt
1907b6921c9d805b65226c2c7b18f55a *inst/models/slow/data/Model2T1000n20batch2ODEsimData.txt
ca49445b860c7fcd03b7b09cee1e2691 *inst/models/slow/data/New2CovT500n10batch1ODEsimData.txt
ad4c9c642fb33027ed30a55495dbb715 *man/EMG.Rd
42aaae60ad79522b95950ffb479cd470 *man/EMGsim.Rd
f25a6e4e3d481e36eb0855218bde5de4 *man/NonlinearDFAsim.Rd
823445d0b63a88ba90d47f76cd1fb3ad *man/PPsim.Rd
441f25db655bbbd4448b236a7b12f177 *man/RSPPsim.Rd
9cc77533506a1d0cbb26a59be6eab0d5 *man/coef.dynrCook.Rd
e7938195645be8ccaac9d35e9a6ae5b3 *man/confint.dynrCook.Rd
190569696dc2ab0e0ce7709a51e177ba *man/diag-character-method.Rd
01477e3b6607279441ffe7cc80fc3024 *man/dynr-package.Rd
b38382716da35def0f96ebd6e43fc6c0 *man/dynr.cook.Rd
499bdcccc0f86f9ab1549369f3baa2b0 *man/dynr.data.Rd
533937686d631db1967c66d026337010 *man/dynr.ggplot.Rd
32e07568c379e8d9b834955d745ef9b4 *man/dynr.ldl.Rd
13d36c150648eb7e4ca564f2cbab2cec *man/dynr.model.Rd
591e5debb0ad626e75d6e6dd772233fa *man/dynr.plotFreq.Rd
535b7d6811f82b8b90f828318fe5828b *man/dynrCook-class.Rd
674f540f3f2f63d6bb2ffd87f2aea8b3 *man/dynrDynamics-class.Rd
69d1bf64970816ad84794204079e5fc8 *man/dynrInitial-class.Rd
6c095b2805ccfc72e99186be1110e9ef *man/dynrMeasurement-class.Rd
357139cce5a85f904af9f8dc00dab494 *man/dynrModel-class.Rd
5312bde6fa40fdc52b0d1e7e01d88614 *man/dynrNoise-class.Rd
4849ae9cae4dd8d0554048bafe2cbad8 *man/dynrRecipe-class.Rd
66c8973b2bf086627109878cda3f0672 *man/dynrRegimes-class.Rd
75a73148c6a676a4db3871e8dc0c1246 *man/dynrTrans-class.Rd
25eea71c0983945e96395414ecb25375 *man/internalModelPrep.Rd
1dd355bf7bc6dc4432d27a4b76c5e513 *man/logLik.dynrCook.Rd
34fdd7c8bd0f5e017ed17acefe904101 *man/names-dynrCook-method.Rd
5c445857ec48d4f160b5334b03115416 *man/names-dynrModel-method.Rd
16a67b31dd096544c6813967a99698b2 *man/nobs.dynrCook.Rd
d6769d218a1b854674fb69dd27379377 *man/nobs.dynrModel.Rd
1da7e7cf2d3ff97bae8e53e5185f14c0 *man/plot.dynrCook.Rd
6d85c5c3f705be7812ed7626a418adf6 *man/plotFormula.Rd
26b130a4a23d6a56b9c18a7412121456 *man/prep.formulaDynamics.Rd
bfaba478ab0f8ef5278382237545d0ca *man/prep.initial.Rd
30ddf98cf8853d70d52f6bdd03736614 *man/prep.loadings.Rd
9adec17d6c783fcc5354dabfe7aa56c1 *man/prep.matrixDynamics.Rd
4ebba03107049c280aceebbf574a72f2 *man/prep.measurement.Rd
97b38344a2671c3afa01ea2e779ec399 *man/prep.noise.Rd
3395bd95c97a221ba772b69861c0d6aa *man/prep.regimes.Rd
6573440fed5f0a253792deac00179857 *man/prep.tfun.Rd
79db3317f0de5e4e834c995f217fa11b *man/printex.Rd
6c46aea88d283402c56a276ce95a0e2a *man/summary.dynrCook.Rd
a35e5907362c6af73bf94f9810cdac4e *man/vcov.dynrCook.Rd
27631498103b08980fc77fb027f309ae *src/Makevars.in
9ad2e7f37645e8bae554f2727cb35826 *src/Makevars.win
43f935651d16579dda9f5dc7cfd19a41 *src/adaodesolver.c
e9f1df8271427e034532757fd7948218 *src/adaodesolver.h
a3214f4f95b3ea2d8ec91dde87d187a6 *src/brekfis.c
c6cf5f5c6808109c1a9cd1cc0d1bbaff *src/brekfis.h
d24e48042dada9d189bf5f4ade38c9c6 *src/data_structure.h
7ff8e0e77961fcb64c19fad638853773 *src/debug_onair.sh
c46261ee9047f43f539d7b42f888791b *src/debug_onmac.sh
d64a67094aef3f504230d5e34664144c *src/ekf.c
4258b4147e68e119b09149e2408042a1 *src/ekf.h
d898a8f861f4a3c935023af4ba5ee0ab *src/estimation.c
4d9fdae6f0f480cf787a54c81de70c7f *src/estimation.h
7790845d51f3c908b28602e2d236e627 *src/general.c
164b71327dc31d07dacb9eebfec110b4 *src/glue.c
2b8755aebcb9ea09a9a4ff69e225ba06 *src/mainR.c
85a2174765401994b12d74867211b6d6 *src/mainR.h
63c4cc9d8d2c2914e17378e4a2f43f90 *src/math_function.c
10aa3d1ef6f75ecd8c2da5c08220154a *src/math_function.h
9bb08148c25b9115b015618cb20910dd *src/model.c
e3595686f63b4676e96e30959c61c8f3 *src/model.h
fc1d67946a060243ac0f0ac75bc4da2d *src/neldermead.h
2a77df5d65c208d368fa7102f58fc891 *src/nldrmd.c
4b7910ec3200b81a25ad63c7ad1cf7a9 *src/nlopt-internal.h
2ff94eaad5eaed51d937d589eb673897 *src/nlopt-util.h
6c225833bcda94a97ea0466284ed1630 *src/nlopt.h
6e7cfc3ce4f1c7597ae59d83eb7fc254 *src/numeric_derivatives.c
f686cd3da928af978fab58d3d6991ac8 *src/numeric_derivatives.h
126ae09a41dbca7a51e05425033340a7 *src/optimize.c
1704e7888ca44a3aa0647ec3db7def2d *src/options.c
e3247fa742659d2d3eaa55f98159a6b5 *src/print_function.c
c95fafa07328434ee45b9f5bfb42a8b5 *src/print_function.h
533c2a9397de70a6c80c733ea0c3b26a *src/qsort_r.c
9914ae83064dfcd800182b253db48266 *src/redblack.c
908320b8131a3b49735bc933414bf1bc *src/redblack.h
973ec27866373b6d0337bef743f72f3a *src/runmainC_onair.sh
d65a8ace18e722b0f2c7647055cc6077 *src/runnlopt_onair.sh
8270bf070cb54b6c169e210510edb240 *src/runnlopt_onairwin.sh
7fcb98c63538e5e622decacb7deac1e4 *src/runnlopt_onmac.sh
5457a451a9d8fd14cc13deae0329a15b *src/sbplx.c
9036143892407b2e366e927e337c7072 *src/slsqp.c
a8379ca1ec5419136e85c9e036c495e6 *src/slsqp.h
e2f945871653acef7489996ca2f000c0 *src/stop.c
30eed01a128bfdb4403d9e36c012dfd8 *src/wrappernegloglike.c
417c73cdbb2fbcb6808ae9c7012b1ca9 *src/wrappernegloglike.h
b5f93d62614db4a11ee1361736ce9fe5 *tools/buildNum.sh
f11cb88b80d383ee81b933b8629c2188 *tools/configureAutoConf.in
6f5c65804b070f7e014e01ff57e50d09 *tools/prep
efa1a6d7d916998d5131bce97f8a782b *tools/roxygenize
b4d57d694234f421c236f7994c3a878f *tools/testModels.R
