Encoding: UTF-8
Package: easyDifferentialGeneCoexpression
Title: Easily Computes the Differential Coexpression Analysis
Version: 0.7
Authors@R: person("Davide", "Chicco", email = "davidechicco@davidechicco.it", comment = c(ORCID = "0000-0001-9655-7142"),
                  role = c("aut", "cre"))
Description: A function that reads in the GEO code of a list of probesets or gene symbols, a gene expression dataset GEO accession code, the name of the dataset feature discriminating the two conditions for the differential coexpression, and the values of the two different conditions for the differential coexpression. If the input gene list is made of gene symbols, this package associates the probesets to these gene symbols, if found.  Platforms available: GPL80, GPL8300, GPL80, GPL96, GPL570, GPL571, GPL20115, GPL1293,  GPL6102, GPL6104, GPL6883, GPL6884, GPL13497, GPL14550, GPL17077, GPL6480. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL <https://ftp.ncbi.nlm.nih.gov/geo/series/>. 
BugReports: https://github.com/davidechicco/easyDifferentialGeneCoexpression/issues
Depends: R (>= 4.0.0)
License: GPL-3
URL: https://github.com/davidechicco/easyDifferentialGeneCoexpression
Imports: WGCNA, Matrix, Biobase, GEOquery, diffcoexp, annotate,
        easypackages, geneExpressionFromGEO, dplyr, jetset, markdown,
        R.utils, magrittr, xml2
Suggests: knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.1.2
NeedsCompilation: no
Packaged: 2021-12-01 14:34:42 UTC; dave
Author: Davide Chicco [aut, cre] (<https://orcid.org/0000-0001-9655-7142>)
Maintainer: Davide Chicco <davidechicco@davidechicco.it>
Repository: CRAN
Date/Publication: 2021-12-02 08:30:05 UTC
