citHeader("To cite the fastTopics package, please use:")

bibentry(bibtype = "Article",
         title = paste("Visualizing the structure of RNA-seq expression data",
                       "using grade of membership models"),
         author = c(person("Kushal K. Dey"),
                    person("Chiaowen Joyce Hsiao"),
                    person("Matthew Stephens")),
         journal = "PLoS Genetics",
         volume  = 13,
         number  = 3,
         pages   = "e1006599",
         year = "2017",
         url = "https://doi.org/10.1371/journal.pgen.1006599",
         textVersion =
           paste("Kushal K. Dey, Chiaowen Joyce Hsiao and Matthew Stephens",
                 "(2017). Visualizing the structure of RNA-seq expression",
                 "data using grade of membership models. PLoS Genetics",
                 "13(3), e1006599, doi:10.1371/journal.pgen.1006599"))

bibentry(bibtype = "Article",
  title   = paste("Non-negative matrix factorization algorithms greatly",
                  "improve topic model fits"),
  author  = c(person("Peter Carbonetto"),
              person("Abhishek Sarkar"),
              person("Zihao Wang"),
              person("Matthew Stephens")),
  journal = "arXiv",
  volume  = "2105.13440",
  eprint  = "2105.13440",
  year    = "2021",
  archivePrefix = "arXiv",
  url = "https://arxiv.org/abs/2105.13440",
  textVersion = paste("Peter Carbonetto, Abhishek Sarkar, Zihao Wang",
                      "and Matthew Stephens (2021). Non-negative matrix",
                      "factorization algorithms greatly improve topic model",
                      "fits. arXiv 2105.13440."))

bibentry(header = "If de_analysis is used, please also cite:",
  bibtype = "Article",
  title = paste("Interpreting structure in sequence count data with",
                "differential expression analysis allowing for grades of",
                "membership"),
  author  = c(person("Peter Carbonetto"),
              person("Kaixuan Luo"),
              person("Abhishek Sarkar"),
              person("Anthony Hung"),
              person("Karl Tayeb"),
              person("Sebastian Pott"),
              person("Matthew Stephens")),
  journal = "Genome Biology",
  doi = "10.1186/s13059-023-03067-9",
  volume = 24,
  pages = 236,
  year = 2023,
  textVersion = paste("Peter Carbonetto, Kaixuan Luo, Abhishek Sarkar,",
    "Anthony Hung, Karl Tayeb, Sebastian Pott and Matthew Stephens.",
    "GoM DE: interpreting structure in sequence count data with differential",
    "expression analysis allowing for grades of membership. Genome Biology",
    "24: 236 (2023). https://doi.org/10.1186/s13059-023-03067-9"))
         
