24f00633739833cd19496a822aba7e3b *DESCRIPTION
e32d965928a8b6acec946e52fa5721c2 *NAMESPACE
1c81c2319325968f795776126aa768b3 *NEWS.md
bf13b586ba3a40cbce6d54e677ce0576 *R/aaa_lang.R
1004bbead8a4139e8fc87838f5ba77f8 *R/aab_env.R
5c51455613828b656d59eb8317dc32df *R/action_age.R
e9b05838f3a91857aad5a963bb21b591 *R/action_grow.R
1117ede66b805e399060149284da6854 *R/action_mature.R
936005eb1aac1654775c807bd22374f5 *R/action_migrate.R
046d8d67613306bf5d6cd023c88d1c90 *R/action_naturalmortality.R
9bbf004c91ae1f09c58bb6a3b688ee98 *R/action_order.R
b00e1d3414882403fe2367ebba3ad2e3 *R/action_predate.R
4eb2e41cb82ed4d3f181cd6c9eef11f6 *R/action_renewal.R
4de129863a03fbc0320896549e05fe8e *R/action_report.R
3afff756f62df3d6c1388b1a60c0789e *R/action_spawn.R
7d98bbbda9ebdca142608f88a939f92e *R/action_tagging.R
5a8d8f883cd05ebd43b26816a61847ad *R/action_time.R
06324f86839a61ca8a283420f9f4811f *R/debug_utils.R
99560931fe55a09e5e306cdc634ba86c *R/eval.R
25b69cb79ec50e7e3b77c9a3124e52a4 *R/formula_utils.R
bf12308921ed92b5de5bcea53b4d3821 *R/init_val.R
af01e18ac7ba5ea3f591f92c307a33b9 *R/likelihood_bounds.R
91f34e3910fd8fa32aff92c63fc900f3 *R/likelihood_data.R
a6788e41b2fcb14951aa2238f74c3772 *R/likelihood_distribution.R
1d4057c3e41fe1172f52b9ad4aec9830 *R/likelihood_random.R
8722c1b6e9d9a93a2e8c88860a4fd7df *R/likelihood_tagging_ckmr.R
f4c9e4648c6fab3d0c6330f6065a9085 *R/likelihood_understocking.R
2956516b113e069bb37bec682eb229e8 *R/params.R
c9392ba1277799c551d0b0198df614a9 *R/run.R
c84eb37b608b9b43d50b50807407f707 *R/run_desc.R
ceaa11a10151f5ac55b893cef6ea2a42 *R/run_r.R
d1ea9c6f4bb97a732bf2cc9dbc3277d4 *R/run_tmb.R
c3e5bfd901b3529ae6ec866211dcd328 *R/step.R
68f8bdcb84962b75f7d9aa4bb92103c2 *R/stock.R
6c087b42cee736495cadd366a6f4c1c1 *R/stock_age.R
3cd650657d6a36e284c65906eb2f2c62 *R/stock_areas.R
223484cf1e4852162a4a226b6201edbc *R/stock_manual.R
2df5e69568be7607c9e08341161a0d94 *R/stock_tag.R
c61d32f1aa186ae55ce8b10f39d034d6 *R/stock_time.R
0d3ccf629c33c9b0ad8d52f93fd790f6 *R/suitability.R
96b716fc70d2711667e492fee7bada15 *R/test_utils.R
c471236321c7af69027446a0e81b9c6f *R/timedata.R
cffddd1aec12fe0d9606ce18bf5d0e9a *R/timevariable.R
cae0912e8d81d6b84f879f4dbb0c8b12 *README.md
1276135652ad92cfef7cd6e0f742c9c7 *build/vignette.rds
ff33ab2cf154dff59d5f0e4c6211cc76 *inst/doc/incorporating-observation-data.R
4d7f3fe1cc434bf2b243c56ce4957864 *inst/doc/incorporating-observation-data.Rmd
938cc85b4672532a72e5e2ad5ea61b5a *inst/doc/incorporating-observation-data.html
74dddc71cbb93fe9d7cd4e308c05eae2 *inst/doc/introduction-single-stock.R
35d66e25a05abb1a2309ef01f32c7f29 *inst/doc/introduction-single-stock.Rmd
4a32e64dfaecc8ce1994b623bdf261ad *inst/doc/introduction-single-stock.html
bd7366b1311a76ae82e132473fc5071f *inst/doc/model-customisation.R
d431a0a0d59694bb55424ba973e461cc *inst/doc/model-customisation.Rmd
9d0a52e5752690e15d5ad90cd21be97f *inst/doc/model-customisation.html
113d95c30a47c8d0ddb905749a0d4bb4 *inst/doc/model-debugging.R
9db6e497350a01c852637b93e3bef454 *inst/doc/model-debugging.Rmd
09fbf04ccfc9a495e50d1f8e59c5d911 *inst/doc/model-debugging.html
fae3e96e8f4e6f1b18aa6aa9fd6d4061 *inst/doc/model-structure.R
87513001dac3a054b7927c331570ee40 *inst/doc/model-structure.Rmd
c7d627b2b8c7a501253584f93180e353 *inst/doc/model-structure.html
68c839352c7199c0bd83fc9a9f5ca3be *inst/doc/multiple-substocks.R
e965d5dd5753cfcdd05e9d081d706ca5 *inst/doc/multiple-substocks.Rmd
09e8c338f1533b40e0029e43ebc4b674 *inst/doc/multiple-substocks.html
257862ad3893f8fc14ffc6e0af611076 *inst/doc/random-effects.R
924a90b59fa718ff4e6fbb1f25708527 *inst/doc/random-effects.Rmd
321dc414e5551a7035034ea679756d9c *inst/doc/random-effects.html
60e0cf18cdb178678abb59c81db3a4dd *inst/doc/writing_actions.R
5f121d52258afb45d25a1bf8c27bcd50 *inst/doc/writing_actions.Rmd
9059ede28ddc9060ed0f89d30e95874e *inst/doc/writing_actions.html
c8f3a512f684deff19b219b924db5f84 *man/aaa_lang.Rd
fe53863825cea75643d9ff8b5fc26c56 *man/aab_env.Rd
62bbfae4fd22ddf47959d49b5a653639 *man/action_age.Rd
df84267d0a4a0c94a97d5bd905b5931b *man/action_grow.Rd
3ede04d9e44d46a6b2b88a2f376cdb23 *man/action_mature.Rd
752002e70f30ba488b815d0f87da5523 *man/action_migrate.Rd
7cd55ae4f3d4e559f58e1f5f6f891478 *man/action_naturalmortality.Rd
06ab6c8f8ea6ad6df426dcc4e319c182 *man/action_order.Rd
1f76cd7aa3a4059b579bd8fd0b14081c *man/action_predate.Rd
6952b910890dedeaab2daa185a16ac2a *man/action_renewal.Rd
7868e5bf6bd8655d082e6fa7647e6293 *man/action_report.Rd
4093184dead7011d0ca461514569f34a *man/action_spawn.Rd
7f0f518767e8d7592c0884f505ad48fe *man/action_tagging.Rd
e874410864d476a9faf6e009a1889ec1 *man/action_time.Rd
7bc03200caa9020a542d1e83c0073263 *man/eval.Rd
a618fd2637004e9063b796a060edd674 *man/formula_utils.Rd
d033cc8313d3e8b2b5da558c4a9ef050 *man/init_val.Rd
11aaac3acd4c8950af5949554a8312ab *man/language.Rd
c9c94dc4166345bc2ecde64f4f89bc68 *man/likelihood_bounds.Rd
54f02bbd7c5be80e075cb55c73312e19 *man/likelihood_distribution.Rd
47797c96a4558fe28a72b14f43314608 *man/likelihood_random.Rd
cf18eee7e1a576efb93280826f0c510f *man/likelihood_tagging_ckmr.Rd
ac70b1aacd3b7e6f72f1d8833ed608a0 *man/likelihood_understocking.Rd
aa50c73fec7969833292f04ea1a45bd3 *man/macros/symbols.Rd
0df276b75d068f4b4e1d87995f0c5411 *man/params.Rd
10cc07af1a4318997cbf55e4c3def80d *man/run_desc.Rd
096dc563b4788392007bd8900be2fb7e *man/run_r.Rd
27b211f4bb635e65ec5e2c39d1340adb *man/run_tmb.Rd
13092e1ec0a16f06cd0556100d638050 *man/step.Rd
7c0e1a68cf0039d0a51a75a352758e80 *man/stock.Rd
21508926f1ecd44ca10cd4f26dfdba14 *man/stock_age.Rd
8f38f370a82c22be6a7046f436bd9625 *man/stock_areas.Rd
a19a9f32ee0760875bc424764131c371 *man/stock_tag.Rd
136dd6ffe4face4c76714f312fe0feb9 *man/stock_time.Rd
23af0e7d51611bfa3a8cd7dce42c06bc *man/suitability.Rd
4f33ea92414186ef835c8e0d226aa9b1 *man/timedata.Rd
0f4e59a0bb73dbd9203f74cb41b83d91 *man/timevariable.Rd
c35c08ef4ff108d8a90b1babcccab6d5 *tests/test-aab_env.R
2c59de25f43de28ef0c013bae34d4a82 *tests/test-action_age.R
a29de80b56700e7fb8517cd3c34b7639 *tests/test-action_grow.R
88439d078cd53a8559a0190711821fcc *tests/test-action_mature.R
0b43e6320c94da33b8651fd8ca47324f *tests/test-action_migrate.R
0328e06154099a9d5a538cd630986b25 *tests/test-action_naturalmortality.R
e726c3047dc0973699fff464ede2a9b0 *tests/test-action_predate-catchability.R
a3554ec8dae09dc059bac87de4f17e5e *tests/test-action_predate-numberfleet.R
231ae2017db757da14d721f85c18f269 *tests/test-action_predate.R
438d9a2c848f63e807fdc82b9fff0d64 *tests/test-action_renewal.R
58c903e0d17758bf742fc867b22025ad *tests/test-action_report.R
36e78f07a5e091ed99ec67536a00d4e2 *tests/test-action_spawn-multipleoutputs.R
71794babddbc378698e7c48710613a06 *tests/test-action_spawn.R
52c4695514285f06b7fb4c59b2cbf7ba *tests/test-action_tagging.R
7ef5b1c3e522754749af1769d7622654 *tests/test-action_time.R
58df02ecd3f7d6832aeb0e8ca81d65a4 *tests/test-eval.R
6f3b945554c2d5bc9b809a77b36e9891 *tests/test-formula_utils.R
b6603873c5c1175d7b85197c6593f719 *tests/test-init_val.R
2e2d1146cb5026f2756b12fb5b1e713b *tests/test-likelihood_bounds.R
43ffacdd698e88ff19b35e2c1f4a61ff *tests/test-likelihood_data.R
d0b5270f5103be82dadbc65b9446ca9f *tests/test-likelihood_distribution-surveyindices.R
0bc254f66a49716f669558a15851fadc *tests/test-likelihood_distribution.R
c41c2c4b20eed2a86626252bd443c2ac *tests/test-likelihood_random.R
f847a3e6ae24db401911342185b7514b *tests/test-likelihood_tagging_ckmr.R
c930a3a78452c8a9de3d1bbfa468194a *tests/test-likelihood_understocking.R
26cf6e8710f3df9cd8ee1274cd202ef8 *tests/test-params.R
4e225af5cf32a76371ecac26e1598a43 *tests/test-run.R
ef3ec148a469809ea32a354efc1d3784 *tests/test-run_r.R
15fa148514cfa46e2e951e32585fc923 *tests/test-run_tmb-reporting_enabled.R
0727d294efdd46b0b9dae6d4a26cd7d5 *tests/test-run_tmb.R
685e896381185717861cf173d2d7238a *tests/test-step.R
9e84ae9ff6379f14dbc1a08cab6ac15b *tests/test-stock.R
e57427375bd75e09e84c1c91600226bc *tests/test-stock_age.R
48496a2bf3503ba88986144a2c01844b *tests/test-stock_areas.R
e08524d6610ac6e8d2f08562c0dc3ab0 *tests/test-stock_tag.R
ecdef67b5e13be8a2e40d04817e50cf0 *tests/test-stock_time.R
5d456719fa30370b8f2b547105a12d69 *tests/test-suitability.R
241cb5e6a1b9c57c9788c1d72025db88 *tests/test-timedata.R
f91673de3710fd948e803cd308ac5cda *tests/test-timevariable.R
4d7f3fe1cc434bf2b243c56ce4957864 *vignettes/incorporating-observation-data.Rmd
35d66e25a05abb1a2309ef01f32c7f29 *vignettes/introduction-single-stock.Rmd
d431a0a0d59694bb55424ba973e461cc *vignettes/model-customisation.Rmd
9db6e497350a01c852637b93e3bef454 *vignettes/model-debugging.Rmd
87513001dac3a054b7927c331570ee40 *vignettes/model-structure.Rmd
e965d5dd5753cfcdd05e9d081d706ca5 *vignettes/multiple-substocks.Rmd
924a90b59fa718ff4e6fbb1f25708527 *vignettes/random-effects.Rmd
5f121d52258afb45d25a1bf8c27bcd50 *vignettes/writing_actions.Rmd
