
rm -f INTERMED.*
echo -n "AUTOSOMAL (A) OR SEX-LINKED (S)? "
read AORS
echo -n "DATA FILE IS "
read DFILE
echo -n "JOB FILE IS "
read JFILE
echo -n "SUMMARY FILE IS "
read TFILE
echo -n "PROLIX FILE IS "
read PFILE
echo -n "SPLIT FILE? (Y OR N) "
read YORN
echo -n "CP FILE IS "
read BAT
case $AORS in
     A|a)
           echo "rm -f " $PFILE > $BAT
             echo "rm -f " $TFILE >> $BAT
	     echo nucfama $DFILE $JFILE $PFILE $TFILE >> $BAT
	     case $YORN in
	        Y|y) echo "emx " $PFILE $TFILE $AORS >> $BAT
	             echo "mv " INTERMED.2 INTERMEDFILE >> $BAT
	             echo "pointr " $JFILE $PFILE $TFILE >> $BAT
	             echo "mv " INTERMED.3 INTERMEDFILE >> $BAT
		     echo "pointr " $JFILE $PFILE $TFILE >> $BAT
                     echo "rm -f INTERMED*" >> $BAT 
		     chmod +x $BAT;;
	          *) echo "mv INTERMED.1 INTERMEDFILE" >> $BAT
	             echo "pointr " $JFILE $PFILE $TFILE >> $BAT
                     echo "rm -f INTERMED* " >> $BAT 
		     chmod +x $BAT;;
	     esac ;;

	*)   echo "rm -f " $PFILE > $BAT
             echo "rm -f " $TFILE >> $BAT
	     echo nucfams $DFILE $JFILE $PFILE $TFILE >> $BAT
	     case $YORN in
	        Y|y) echo "emx " $PFILE $TFILE $AORS >> $BAT
	             echo "mv " INTERMED.2 INTERMEDFILE >> $BAT
	             echo rpoints $JFILE $PFILE $TFILE >> $BAT
	             echo "mv " INTERMED.3 INTERMEDFILE >> $BAT
		     echo rpoints $JFILE $PFILE $TFILE >> $BAT
                     echo "rm -f INTERMED*" >> $BAT
		     chmod +x $BAT;;
	          *) echo "mv INTERMED.1 INTERMEDFILE" >> $BAT
	             echo rpoints $JFILE $PFILE $TFILE >> $BAT
                     echo "rm -f INTERMED* " >> $BAT
		     chmod +x $BAT;;
             esac
            esac  
