eecc7c2a8496c2b4a5bf69dfd793750b *DESCRIPTION
31e31b43bf21feb6c9f8d96cc6458def *NAMESPACE
90fbdeaffd453e68cc6cf95381347656 *NEWS
94a137056cb2b726d5a7080c670b0182 *R/all_eq.r
a06324534c6c10c46a9f44ea9700fb68 *R/bm.r
3925e520f0834502e07562a0c33fba82 *R/bm_as_bm.r
47816847ce0ecb167eba81e8855d5411 *R/bm_files.r
54f0dac3fb4997eb8292a3f66d4aba06 *R/bm_genomic_sex.r
2b735009e07be11a1b5d92613a6eabdb *R/bm_grm.r
8f729a4c26842185d9d0abbec0eaf530 *R/bm_hwe.r
e7281d851c2404f68d42e7835f3cb2c3 *R/bm_interface.r
28e301c98f12574d20205cc605f298b5 *R/bm_ld.r
5b964dbeca9439c887c5e09222d2b775 *R/bm_ld_thinner.r
4689a74a9e175dbf117d494724a80da5 *R/bm_merge.r
08cb391db13370b39361e3bac9b8680d *R/bm_product.r
4896bd6bb9cf7a38350c4c86c41d2e0b *R/bm_select.r
cebbd0ca3386614fee70d956c538bad3 *R/bm_stats.r
655221dd6a2bd19a0204bb2db658181b *R/bm_subsetting.r
bd50097a1e8b63770b4a30e6350aaac1 *R/bm_vcf.r
2da517373e6745b931fc2289181dae53 *R/cbind.r
859df78286fa5a8036ca48102a5546bd *R/getNumThreads.r
a8c83456c721bc8b3413b5ac6294edd3 *R/gwas.r
d9bb4417ae676ca14497f0c754b8d61f *R/ld_plot.r
0512ed98107b5664b2513f1b1b0a018a *R/lik_contour.r
edf4ec74f4f0ca5f2cba0f89f1c6656a *R/lmm.profile.restricted.likelihood.r
22e5c3d6beb7e6bf53299373f078986f *R/lmm.restricted.likelihood.r
68c7a9422d658dcfc9cf59ae72a52d4a *R/lmm_aireml.r
e20a72b79ff112e923e8ef350ff004ea *R/lmm_diago.r
51f8c7826ae4401b3daaab8440139698 *R/lmm_diago_full.r
0fb0f7222ab7a4a9252c94b7dbf609f1 *R/lmm_simu.r
73e68023e7df6552c36c532623f5c88a *R/logistic_mm_aireml.r
c9cc715efa5e880ee686d181e0d56f99 *R/logp.thinning.r
e9ff8cdec784eef8be8a452d75b83ae5 *R/manhattan.r
b866922bf1fbf407124c41999eb27910 *R/manhattan.thinning.r
1004b2597000f3b718c57b64bdb9fbad *R/qqplot.pvalues.r
f9b26f62c817664dffd5c57134634b56 *R/random_pm.r
80519231a420006f238e55a68b6b036c *R/rbind.r
be28b697d241654ffbd360a73c4281b9 *R/score.r
1081d217b2438f5a435c13a27a24c9cf *R/setThreadOptions.r
b149dd26dd260f2e08f35c8c6db1ac42 *R/snp_duplicated.r
705c10fd5fd4e86e2c8ee58bb95f9c8c *R/snp_match.r
0df749e329bbf48b5b0ca882425ba105 *R/zzz.r
7a4d7a6ffc0ff19fdacef27beb86f8bf *TODO
fdf028960e413ecd90286bed2f7d972b *build/vignette.rds
3596d85a370f43e3e00ac131fbbbf95c *data/AGT.rda
34e12c308b68ce8e6ffaf071af82af7c *data/LCT.rda
28e30890deb426c070776d01a1320d49 *data/TTN.rda
abf8652f46e0022f2cd2b5ff8efd424c *data/datalist
75a053dd89fd243ac44084091878ab65 *inst/doc/gaston.R
2e7046bc765c58110d65cfd7b7d91ba6 *inst/doc/gaston.Rnw
67b4b372f51c1ee2006ca2db01bc01a1 *inst/doc/gaston.pdf
12c31f58f990024d8b77c3b0c9dc86cc *inst/extdata/LCT.bed
2273b75e59551e464ae55f404d2887ac *inst/extdata/LCT.bim
3b1a418c594a35920264a5743580180f *inst/extdata/LCT.fam
91e0aa603c29eb463fe6dbefd9383834 *inst/extdata/LCT.rds
0f25ffbe7be484c3f88c85c89af8c39e *inst/extdata/LCT.vcf.gz
3ade457b2b3cdef6faaa05968fc49d42 *inst/extdata/LCT.vcf.gz.tbi
80c6a9e575bb3038aafd512a85290e08 *inst/extdata/chr2.bed
97078f282b05f0a6ae30948bcece2470 *inst/extdata/chr2.rds
5efaccd09ca97939175014cca9adb565 *inst/include/ai-reml-1k-covar.h
1a02a163cf05248bc155227335e88260 *inst/include/ai-reml-1k.h
5908e189075bd86441789248917cb75e *inst/include/ai-reml-logit-1k-covar.h
f76675b2c996c91ae1a7fbc3c657421c *inst/include/ai-reml-logit-1k.h
ac288ae310e60602322145fccb12e707 *inst/include/ai-reml-logit-nk-covar.h
6403c7a5da49b0a60d048fbe1cb00446 *inst/include/ai-reml-logit-nk.h
bd83fd3dd89cac441da5f3ed61963ecc *inst/include/ai-reml-nk-covar.h
6ff1e50646f6573f6a8de97786526d40 *inst/include/ai-reml-nk.h
80ba7fcaecd0962a0bfda28ef34199a4 *inst/include/any.h
f706984f78ec545f9a2e448afe9dc6b4 *inst/include/diago2.h
6de842318c40111958537bcae48203ec *inst/include/diago2_full.h
c450c708312c2d077789aa6bec0b280e *inst/include/diago2_full_nocovar.h
4fa633844b67d18859ee1fde9e9ab5ed *inst/include/diago2_nocovar.h
c6cf55e0660ce7f6d7cce588836ea596 *inst/include/gaston.h
5efaccd09ca97939175014cca9adb565 *inst/include/gaston/ai-reml-1k-covar.h
1a02a163cf05248bc155227335e88260 *inst/include/gaston/ai-reml-1k.h
5908e189075bd86441789248917cb75e *inst/include/gaston/ai-reml-logit-1k-covar.h
f76675b2c996c91ae1a7fbc3c657421c *inst/include/gaston/ai-reml-logit-1k.h
ac288ae310e60602322145fccb12e707 *inst/include/gaston/ai-reml-logit-nk-covar.h
6403c7a5da49b0a60d048fbe1cb00446 *inst/include/gaston/ai-reml-logit-nk.h
bd83fd3dd89cac441da5f3ed61963ecc *inst/include/gaston/ai-reml-nk-covar.h
6ff1e50646f6573f6a8de97786526d40 *inst/include/gaston/ai-reml-nk.h
80ba7fcaecd0962a0bfda28ef34199a4 *inst/include/gaston/any.h
f706984f78ec545f9a2e448afe9dc6b4 *inst/include/gaston/diago2.h
6de842318c40111958537bcae48203ec *inst/include/gaston/diago2_full.h
c450c708312c2d077789aa6bec0b280e *inst/include/gaston/diago2_full_nocovar.h
4fa633844b67d18859ee1fde9e9ab5ed *inst/include/gaston/diago2_nocovar.h
cc2564fcba9de9494f62f2897b7b38a8 *inst/include/gaston/lmm_diago_min_max_h2.h
50695e43c414ed9e75d5c84f12d28434 *inst/include/gaston/logit.h
522dc155a95ed07a304d850b5846a4cc *inst/include/gaston/m4_kinship_type.h
e4bd8556a7e5a7947e596ab86c7b4374 *inst/include/gaston/matrix-varia.h
ce592b0410487ba40ca4cf56f2467a4b *inst/include/gaston/matrix4.h
60d5eb22e16bdf18424eaa173c21c266 *inst/include/gaston/optimize_2.h
b84d3bcac787905ee3d6abc00b8ca54b *inst/include/gaston/snp_hash.h
cc2564fcba9de9494f62f2897b7b38a8 *inst/include/lmm_diago_min_max_h2.h
50695e43c414ed9e75d5c84f12d28434 *inst/include/logit.h
522dc155a95ed07a304d850b5846a4cc *inst/include/m4_kinship_type.h
e4bd8556a7e5a7947e596ab86c7b4374 *inst/include/matrix-varia.h
ce592b0410487ba40ca4cf56f2467a4b *inst/include/matrix4.h
60d5eb22e16bdf18424eaa173c21c266 *inst/include/optimize_2.h
b84d3bcac787905ee3d6abc00b8ca54b *inst/include/snp_hash.h
1d858fed609a26fe339055ff358cdcfe *man/AGT.Rd
b8b97adeeb0e0396af885b734ae37cba *man/DM.Rd
001fc5f501b59f98051215961c488e9f *man/GRM.Rd
82fa8049e96f840b0ff07a0525355af2 *man/LCT.Rd
379c3c9cc71d6772b4e9e3b19e6547fd *man/LD.Rd
c93bbe7f03d59de5422fb16881062cb9 *man/LD.plot.Rd
fdd73d323e295f63ea96da17802aedf3 *man/LD.thin.Rd
bfdf4d416e958b882960e64f66c72572 *man/SNP.duplicated.Rd
12f3191908f0585722ed6d74954ac9a5 *man/SNP.match.Rd
9840358e0ade1e6ac512ed1377c8c77b *man/TTN.Rd
d45b95cd8d2b78772208789a108a811d *man/Tests.Rd
00d8064525f1cc07a3d1ce6fd4e73b86 *man/as.bed.matrix.Rd
3461f8d3e98b625dc20892b463183d22 *man/association.test.Rd
8b858b713bb62dfa7680dcc2abd589ea *man/bed.loadings.Rd
f49c3589a104631d3de5297cac8f621d *man/bed.matrix-class.Rd
b4e981a2786e0a4e8ebec374b20b5baa *man/gaston-package.Rd
d8b1019df5e5f2156c8a8a1dddbbe5f7 *man/is.autosome.Rd
1c090f5759f4a1ada3f5940462402c4a *man/lik.contour.Rd
919045602c779bf2839fb0eb82239c61 *man/lmm.aireml.Rd
dc2cc00676821db7b237a66bfe915e82 *man/lmm.diago.Rd
9f958297a56cf2642e24d238f7c2c23d *man/lmm.diago.likelihood.Rd
3ead76299ef8100a772cf1cd59018cdd *man/lmm.restricted.likelihood.Rd
f5faee6732a25028e896865eb64a10f6 *man/lmm.simu.Rd
d04a63f16f8e6bf6878ef8a0348715b5 *man/logistic.mm.aireml.Rd
09808d53bc087d63cb09e068c617f7b7 *man/manhattan.Rd
f4bffc6fac393fcff5dd1871eb8c9da2 *man/qqplot.pvalues.Rd
50e2d50dc081da54f5a30c262f7ac328 *man/random.pm.Rd
a921d410f8365b1b6f75953d85e3fc9f *man/read.bed.matrix.Rd
e22ec915539da08c16640f60a7338bbc *man/read.vcf.Rd
bb1fc5c2b33bc44643580ea73cb555fb *man/reshape.GRM.Rd
43bbd4b2eb9366426a66feaa18ea6edc *man/score.fixed.Rd
b9a15b29dff5ec3e4bca86d230632f88 *man/score.variance.Rd
a7e32adc080001aded909617c2d561c0 *man/select.inds.Rd
959bffa32e3cf77017c769785bc075f2 *man/select.snps.Rd
5bc788f0967b606bbc0b2a108145faee *man/set.genomic.sex.Rd
671cb542ef1024b8025dee620e60cb33 *man/set.hwe.Rd
37f701a7dbaa4a2f5fbcf2427834007d *man/set.stats.Rd
4395bec9c53f2345b0b1d4973156a48f *man/setThreadOptions.Rd
224ec8d1d59b0fe51513cc4bd25b075b *man/write.bed.matrix.Rd
a67154331c58b2a5f796201cab0e7c8f *src/Makevars
a61ad1ea1997f6371386e9f030cc37da *src/Parallel.h
c810db66b3d2cc41dddfc10ca1ddf068 *src/PoorMansParallel.cpp
826510c41a4830b55be663d7e17df324 *src/PoorMansParallel.h
5efaccd09ca97939175014cca9adb565 *src/ai-reml-1k-covar.h
1a02a163cf05248bc155227335e88260 *src/ai-reml-1k.h
e6693119ee0ddd97b6304855795d5691 *src/ai-reml-logit-1k-covar.cpp
5908e189075bd86441789248917cb75e *src/ai-reml-logit-1k-covar.h
f76675b2c996c91ae1a7fbc3c657421c *src/ai-reml-logit-1k.h
ac288ae310e60602322145fccb12e707 *src/ai-reml-logit-nk-covar.h
6403c7a5da49b0a60d048fbe1cb00446 *src/ai-reml-logit-nk.h
bd83fd3dd89cac441da5f3ed61963ecc *src/ai-reml-nk-covar.h
6ff1e50646f6573f6a8de97786526d40 *src/ai-reml-nk.h
0f5cba9ad6fc10240f6a6bccdee51c85 *src/allele_recoding.cpp
80ba7fcaecd0962a0bfda28ef34199a4 *src/any.h
28b689c2e93135ba0f61b7ad28c508d5 *src/davies.c
f706984f78ec545f9a2e448afe9dc6b4 *src/diago2.h
6de842318c40111958537bcae48203ec *src/diago2_full.h
c450c708312c2d077789aa6bec0b280e *src/diago2_full_nocovar.h
4fa633844b67d18859ee1fde9e9ab5ed *src/diago2_nocovar.h
0e62f29818cd0de6db499adf432c9574 *src/export-aireml-1k.cpp
16eda4e91765e9fbc2d50d608798d953 *src/export-aireml-logit-1k.cpp
953b74db74a93a311eb7076441d170bf *src/export-aireml-logit-nk.cpp
4a207bb541281d771203daa64f2bb2f9 *src/export-aireml-nk.cpp
cb3eea1aa8a4f97a2d9665aac1326c83 *src/export-logit.cpp
42d9f0b9a4b235cd281ab0b13763eb86 *src/flip_strand.h
5ccca14dc6d3c899109cebdd79b614ec *src/gaston_init.c
2d832c93123c5afe0797e4671881e17c *src/gwas_lm_quanti.cpp
0ea43cfc5d611f7785b196726aff8fbd *src/gwas_lmm_diago_lrt.cpp
4c3e0946317bd2932a97d30c4d6046ec *src/gwas_lmm_diago_wald.cpp
d3987273178a33c8ae578ef0ac6c2f22 *src/gwas_lmm_score.cpp
b6f20d00e9df91dfbe9fa12add5c0de8 *src/gwas_logit_wald.cpp
48db8c315e27eef6158c29517ae7fb11 *src/gwas_logitmm_wald.cpp
5b5802c73341407e7107dc262bc22880 *src/gzstream.cpp
99d59b3af2c3974f943e118556645888 *src/gzstream.h
958d0d9054228e7698bc571b1b3f365a *src/hwe.cpp
96471f89c4b79cb7d7de773a12233920 *src/hwe_chi.cpp
2b39e959a989f84c56318ba1897b7229 *src/isnullptr.cpp
6eb6f2898faeab0a9718cdf28346d430 *src/lmm_diago_fit.cpp
b1d6e3d9acc7b064ba6b6e7f131b7ddd *src/lmm_diago_full_likelihood.cpp
6d0694708a7f019dbc44b41eefe3d411 *src/lmm_diago_likelihood.cpp
aa38ad1bd59b8bdfd4c0ab698799acc8 *src/lmm_diago_min_max_h2.cpp
cc2564fcba9de9494f62f2897b7b38a8 *src/lmm_diago_min_max_h2.h
50695e43c414ed9e75d5c84f12d28434 *src/logit.h
5c4efbcaa9acb3cbf5012b4ce3f5191e *src/logp_thinning.cpp
e085288dc7c7b0f0f9621658a441ba99 *src/loubar.cpp
40d0909be4391dbdad8048fff47af3ca *src/loubar.h
4063e860069e882e362ffee0d5a24d99 *src/m4_bed.cpp
b3f033ae8977cc5c213de26e4eec9de1 *src/m4_bind_inds.cpp
ca518453f7274adfe90446df16a6be01 *src/m4_bind_snps.cpp
52549bbd13dc85c6a9ad46c7c8601200 *src/m4_conversion.cpp
0736f51ea9808fd62e266c2e2efdb216 *src/m4_dims.cpp
a8a59d02807b82ef0f39cc315ee23b41 *src/m4_exports.cpp
add3241ccec1f7d1b12a9593c875c2ac *src/m4_extractind.cpp
0580d39e033d34b6cf0be91cb6d14c53 *src/m4_extractsnp.cpp
f439675e2f272f0012935a08e9dbb75f *src/m4_kinship.cpp
155d52f82e1d581e6b74b48422943be8 *src/m4_kinship_p.cpp
522dc155a95ed07a304d850b5846a4cc *src/m4_kinship_type.h
382672f6495d76b646f88c694f330ae1 *src/m4_ld.cpp
4116f2ea39de0d15ad4bfd8d7ba2be2e *src/m4_ld.h
432c41709813e4d20439a17ca3e8fa2e *src/m4_ldp.cpp
9b7142c920a7b9dbb1a110e2ef6b6f73 *src/m4_ldthin_left.cpp
d4d812fb56a044820ddbd127f9f8eeb4 *src/m4_ldthin_random.cpp
950351f61d8d99dccf99dd4b1445f665 *src/m4_ldthin_right.cpp
f5b034e3061c23e4d485b2a87677144b *src/m4_prod2_ms.cpp
18394508e09a9794f5b22aec202cc206 *src/m4_prod2_p.cpp
d87ddb89eceac4895f099879c4c25190 *src/m4_prod_ms.cpp
a431b7da262e18d54f3bf95808e672ce *src/m4_prod_p.cpp
3856f815df29bf6eb5a50eef5ace261b *src/m4_read_vcf_2.cpp
893cb5b061472f919ec62f276f75e6ee *src/m4_recode.cpp
20abd921bfad15daa5f82245e4214eaf *src/m4_stats.cpp
9223689bd9dc9baf8cb1bc6cea51ea72 *src/m4_transpose.cpp
68ed16b6edc2f4a71fffa65357755505 *src/manhattan_thinning.cpp
d529e19aec8f225ada3435c709d48d22 *src/matrix-varia.cpp
e4bd8556a7e5a7947e596ab86c7b4374 *src/matrix-varia.h
b0c288b8ea7c21ca08cab3282254f871 *src/matrix4.cpp
ce592b0410487ba40ca4cf56f2467a4b *src/matrix4.h
60d5eb22e16bdf18424eaa173c21c266 *src/optimize_2.h
63c0e08ef8740ce11d3d107164e23b82 *src/pre_likelihood.cpp
0a6a613847518e1360f3e1dc7c76ad3d *src/random_ortho.cpp
11fed7ef63b7ff075d687ac62348deb3 *src/re_likelihood.cpp
d7c1ad0f93bd4862a93e108d01807a1a *src/snp_duplicated.cpp
b84d3bcac787905ee3d6abc00b8ca54b *src/snp_hash.h
50612049a9cd0e4a8e48d82f630ab3a2 *src/snp_match.cpp
2e7046bc765c58110d65cfd7b7d91ba6 *vignettes/gaston.Rnw
