5882beaca7318962527a6fe3821ff445 *DESCRIPTION
a722a3e109e61d1d654e76f16f22084f *NAMESPACE
5f0e6d3372b2d9cb428ffdfa9f17d497 *R/BCdata-class-methods.R
cf369446d3f833a8c5a70c7bdd00741b *R/BCdata-class.R
0f2776b0edbf9b04ec5ca36cca2de66f *R/analysis_functions.R
5b1eb75575524327e5aa98b8ed689107 *R/data.R
5d94f84b1e2df4c57f68915ed69c10cc *R/error_correction_function.R
1fecff577a1710a508f91c2b1a707e1e *R/helper_functions.R
36131afd47e9733617d2ba2ae8f204b0 *R/plot_functions.R
456c63c05952a088bfa6c7d37d519fa1 *R/raw_data_processing.R
bdaeb17a12d5c0c70cabc155082ef68b *build/vignette.rds
f793694d8e46762b7a13cb840d0f7e20 *data/BC_dat.RData
888687064fd5d4bbc26c10430753dfa1 *data/BC_dat_EC.RData
372d8991eeaf3f575c84d930325970f2 *inst/doc/genBaRcode_GUI_Vignette.R
753a72002e4a26facfd030a12bff1696 *inst/doc/genBaRcode_GUI_Vignette.Rmd
48429fe873d25d13b2bf8ba12b0528b5 *inst/doc/genBaRcode_GUI_Vignette.pdf
81f7c08368f2f48d93d55a0e5ec51b3c *inst/doc/genBaRcode_Vignette.R
aa3f700480b328b767532b9d8cd81253 *inst/doc/genBaRcode_Vignette.Rmd
dd53f9960926e27d932ab0bf431794d8 *inst/doc/genBaRcode_Vignette.pdf
d38eab66cc7edde77443acf170a87995 *inst/extdata/knownBCs.txt
76e5b21df3192de7ca70982862a677cd *inst/extdata/test_BCs.csv
5d639e32dc4cf2bbc711cbb0f2ca3245 *inst/extdata/test_data.fastq.gz
48cff7f759192ed8be719d2c8a3fc70b *inst/shiny_app/server.R
1cb717d7407f0b681f9d0a8bc7794e03 *inst/shiny_app/ui.R
677a1709fbe8cec3d00c258a6dbde01b *man/BC_dat.Rd
c5d9613bb704389c5ebfd6b1b5cb14a1 *man/BC_dat_EC.Rd
0dc082f7e8301e0475ad6863aa6dc551 *man/BCdat-class.Rd
f7ebe394f8539f53df7b1ed6306c7248 *man/asBCdat.Rd
a9332d1baed2cc24f94d9791e0f946c6 *man/com_pair.Rd
e16bae944ab4375b4dcb79ba2064f122 *man/createGDF.Rd
7bf8a84784e23f4045a9aac06b57df5a *man/dot-createPatternFile.Rd
759a5ab0d7630f40c4a1096f8c951fc6 *man/dot-generateColors.Rd
65a1d7e8c90ecf411c296b4462573220 *man/dot-getBarcodeFilter.Rd
7f8d0e2b987fa9e88757097bd9bf20f7 *man/dot-getDiagonalIndex.Rd
00d5fd02763ccee2508f8dd09993b743 *man/dot-getMinDist.Rd
321a17eb65db885460d033ca3859bc25 *man/dot-getWobblePos.Rd
ad668590b33d26b67385246dd49e080f *man/dot-hex2rgbColor.Rd
b8caa49acc92a0736e7914da7b859a87 *man/dot-revComp.Rd
54a70abac9bbaff8d4a1e333447b3167 *man/dot-revComp_EqLength.Rd
0f1855f59d5041697d2c129c87309f6b *man/dot-revComp_UneqLength.Rd
124ae2716a68a52d3f3043b7772e63e9 *man/dot-testDirIdentifier.Rd
d35af080cfb4e88b065e0f490e5c8190 *man/errorCorrection.Rd
2cba1ea15c1111cf0f5634f6eea1eb1b *man/error_correction_circlePlot.Rd
79f238b98c4a3a498b3ae6c5f33f3631 *man/error_correction_clustered_HDs.Rd
bc0e63c769b893cb9159008c11c0e478 *man/error_correction_treePlot.Rd
ca701ab5a3f24ad6aeb0810f514759b6 *man/extractBarcodes.Rd
db9eb22ffbafa8a528d8572049e1e5cf *man/genBaRcode_app.Rd
73858cd37995618b6eaa9595f3354eb8 *man/generateKirchenplot.Rd
c19c978adcfc7e6d31245f24daee3a9b *man/generateTimeSeriesData.Rd
e29c6795461bbdf9365d9f269cbd7c37 *man/getBackbone.Rd
6abc6f89b71e33ab9bbb677dc1ca4416 *man/getBackboneSelection.Rd
4cd484385d028195e38f2516e5906250 *man/getLabel.Rd
f91596e1df360bc03eae67d21a5cbb17 *man/getReads.Rd
da4e79aa77095c1a04834b4e4a7dcb77 *man/getResultsDir.Rd
045dde67ad39751902e17e6975f3bc90 *man/ggplotDistanceGraph.Rd
700c0d387f1fc29732ff858fce2201e5 *man/ggplotDistanceGraph_EC.Rd
ad446cc01df978dbade039009faf3c48 *man/hybridsIdentification.Rd
2cd136280c324afa065c9998a3d4de04 *man/plotClusterGgTree.Rd
ee6d89c893b4ecd675a8b96feb4c6954 *man/plotClusterTree.Rd
948e327572cde929935dbae3d57a6be8 *man/plotDistanceIgraph.Rd
b5e877811052d3052427bb24cb52095e *man/plotDistanceVisNetwork.Rd
f75151c56b938a0fb528b1d5517a2ecb *man/plotDistanceVisNetwork_EC.Rd
31bf116508e1e248770a83331b5ea853 *man/plotNucFrequency.Rd
f19fd1747d3f31e951c0376d45c14c80 *man/plotQualityScoreDis.Rd
a0f377fa6a69b1e5b01be61ef905abe1 *man/plotQualityScorePerCycle.Rd
04368d8926b08e0239e5f6658e21b13f *man/plotReadFrequencies.Rd
e6f4ebe26e45e2f4699274b6fba7112c *man/plotSeqLogo.Rd
37e16501b13817ad5d61fb93374812e4 *man/plotTimeSeries.Rd
667bcdda8de4fb9cddaf0c822f192d71 *man/plotVennDiagram.Rd
cdc3be47c81b25c6262fa8f1fb7686f4 *man/prepareDatObject.Rd
85818c2e522d29c37e739f2c5a77def2 *man/processingRawData.Rd
6faf14efc7dcbaf305b5897fbd7a76c4 *man/qualityFiltering.Rd
d1cb86a6482ac7c8af4a438ee22d0d18 *man/readBCdat.Rd
73105a27c5f85c27c4dfbbc137c226c3 *man/setBackbone.Rd
bd3f97e1ca0854ac9436b27ddbbf9eaf *man/setLabel.Rd
ca1494b97748fff602d6d51fb6ed8fdf *man/setReads.Rd
5ab9ae6fbde2b8ee5956aa01d8936fc5 *man/setResultsDir.Rd
ef69a793aa50f8f3b517d7be85e1c871 *tests/testthat.R
349bad3f467c96da3475a0b92ca2f494 *tests/testthat/test_analysis_functions.R
c58a7db8670a07f701e15356a479815e *tests/testthat/test_error_correction.R
43c3e1638fa5fc0164a7524caf1798d2 *tests/testthat/test_helper_functions.R
0a495113b4dae41e1fc0c017358c06fb *tests/testthat/test_raw_data_functions.R
753a72002e4a26facfd030a12bff1696 *vignettes/genBaRcode_GUI_Vignette.Rmd
aa3f700480b328b767532b9d8cd81253 *vignettes/genBaRcode_Vignette.Rmd
d350775f25c677cd80fb89d68167c320 *vignettes/images/app0.png
7281a6ba36541a1dcff3b60e874a7416 *vignettes/images/app1.png
579cdfed589f7bc8e8bfa2141790a653 *vignettes/images/app2.png
e2d738444ab0cc60064ffabd66c2ceca *vignettes/images/app3-2.png
bdc98331430a7360be31f89e7d8aeeef *vignettes/images/app3.png
e5ca6064de16b782fe4ec5dfad83cf7d *vignettes/images/app4.png
03886626423c80b4744189a4db9be104 *vignettes/images/app5-2.png
701c6484805a34d7abe9804057e34bd9 *vignettes/images/app5-3.png
30e5b2a788fa154f27674279e9662dee *vignettes/images/app5.png
3b9d48f9d741381243a66871a5b93873 *vignettes/images/app6-2.png
07790cdacc29f90e80024605df7cea25 *vignettes/images/app6.png
8a9b390ec3ce8d833fc5a8cc0ce77173 *vignettes/images/app7-2.png
61462823956951bc85763730e22caf98 *vignettes/images/app7.png
5f57fd2862ccf0c73d0961d1c42ed5ee *vignettes/images/app8-2.png
87674ae6191f0fd630207e4e31e003c7 *vignettes/images/app8.png
87618fe1b7efbf4d0db6cda376989687 *vignettes/images/app9.png
