ab9e69de6711463b2751d4c4dff0544c *DESCRIPTION
a722a3e109e61d1d654e76f16f22084f *NAMESPACE
8217005f76eaf536c9eda2dbcfbb0480 *R/BCdata-class-methods.R
f1514ae929f54c0202dc9d32cf94c547 *R/BCdata-class.R
2cbce3cdcc4c8695102d57a2f5905485 *R/analysis_functions.R
5b1eb75575524327e5aa98b8ed689107 *R/data.R
edf79764edb8733a55d88c883bb68563 *R/error_correction_function.R
5f48c1ef509429267acef80cc4f69885 *R/helper_functions.R
e3b6563485a308e50cafe6f69d34c8da *R/plot_functions.R
92c15f633e42cd915daab57850aab701 *R/raw_data_processing.R
a0fbc4c1f7bfe0b3823b5981e086bc4c *build/vignette.rds
f793694d8e46762b7a13cb840d0f7e20 *data/BC_dat.RData
888687064fd5d4bbc26c10430753dfa1 *data/BC_dat_EC.RData
6f66fd0f8e33a34e86f3fc322c946ceb *inst/doc/genBaRcode_GUI_Vignette.R
753a72002e4a26facfd030a12bff1696 *inst/doc/genBaRcode_GUI_Vignette.Rmd
05b71411c5aeb5f4e8e021bf60fec6e7 *inst/doc/genBaRcode_GUI_Vignette.pdf
131014b65712672dbadb27ad509fa8fb *inst/doc/genBaRcode_Vignette.R
aa3f700480b328b767532b9d8cd81253 *inst/doc/genBaRcode_Vignette.Rmd
69fb4c9f15d0053949673f6b7438ca0a *inst/doc/genBaRcode_Vignette.pdf
d38eab66cc7edde77443acf170a87995 *inst/extdata/knownBCs.txt
76e5b21df3192de7ca70982862a677cd *inst/extdata/test_BCs.csv
ca54a03abd7f45940d08680b14e3760f *inst/extdata/test_data.fastq.gz
b98e0f8e02a040b24efe3722a4a1dc1f *inst/shiny_app/server.R
1cb717d7407f0b681f9d0a8bc7794e03 *inst/shiny_app/ui.R
4f001c198b9fc4918e331aaf2949788f *man/BC_dat.Rd
b5173dc3c7cc3dec4f0ae4e545684c30 *man/BC_dat_EC.Rd
0dc082f7e8301e0475ad6863aa6dc551 *man/BCdat-class.Rd
f7ebe394f8539f53df7b1ed6306c7248 *man/asBCdat.Rd
a9332d1baed2cc24f94d9791e0f946c6 *man/com_pair.Rd
b5f4d3be0e0a5e6e6b93fe6168bd3aba *man/createGDF.Rd
7bf8a84784e23f4045a9aac06b57df5a *man/dot-createPatternFile.Rd
759a5ab0d7630f40c4a1096f8c951fc6 *man/dot-generateColors.Rd
65a1d7e8c90ecf411c296b4462573220 *man/dot-getBarcodeFilter.Rd
7f8d0e2b987fa9e88757097bd9bf20f7 *man/dot-getDiagonalIndex.Rd
00d5fd02763ccee2508f8dd09993b743 *man/dot-getMinDist.Rd
321a17eb65db885460d033ca3859bc25 *man/dot-getWobblePos.Rd
ad668590b33d26b67385246dd49e080f *man/dot-hex2rgbColor.Rd
b8caa49acc92a0736e7914da7b859a87 *man/dot-revComp.Rd
54a70abac9bbaff8d4a1e333447b3167 *man/dot-revComp_EqLength.Rd
0f1855f59d5041697d2c129c87309f6b *man/dot-revComp_UneqLength.Rd
124ae2716a68a52d3f3043b7772e63e9 *man/dot-testDirIdentifier.Rd
725f2f9d68bb1f34b9de6e423b85ef52 *man/errorCorrection.Rd
2cba1ea15c1111cf0f5634f6eea1eb1b *man/error_correction_circlePlot.Rd
79f238b98c4a3a498b3ae6c5f33f3631 *man/error_correction_clustered_HDs.Rd
bc0e63c769b893cb9159008c11c0e478 *man/error_correction_treePlot.Rd
503b6744be7ee08ffcb6e425acf64f50 *man/extractBarcodes.Rd
db9eb22ffbafa8a528d8572049e1e5cf *man/genBaRcode_app.Rd
85a0c5d8e812a32c265a9bd8fc276fa7 *man/generateKirchenplot.Rd
c19c978adcfc7e6d31245f24daee3a9b *man/generateTimeSeriesData.Rd
e29c6795461bbdf9365d9f269cbd7c37 *man/getBackbone.Rd
6abc6f89b71e33ab9bbb677dc1ca4416 *man/getBackboneSelection.Rd
4cd484385d028195e38f2516e5906250 *man/getLabel.Rd
f91596e1df360bc03eae67d21a5cbb17 *man/getReads.Rd
da4e79aa77095c1a04834b4e4a7dcb77 *man/getResultsDir.Rd
e94a1ff26f194e2ac43fc74beab58f5e *man/ggplotDistanceGraph.Rd
44e261509fb6664e765708cc380ac175 *man/ggplotDistanceGraph_EC.Rd
ad446cc01df978dbade039009faf3c48 *man/hybridsIdentification.Rd
a70d66c282247e49bdba60bd6428c2c4 *man/plotClusterGgTree.Rd
3cc926d48e90ae55ddd7b89956a3365f *man/plotClusterTree.Rd
76c06b56c4b4382c3e2f65b18ad8eb3b *man/plotDistanceIgraph.Rd
c4d915d54f9a8b1dd1f200adbaeaf69a *man/plotDistanceVisNetwork.Rd
3674ab226748278a1541e0d3b0421abf *man/plotDistanceVisNetwork_EC.Rd
31bf116508e1e248770a83331b5ea853 *man/plotNucFrequency.Rd
ec0c72043955dc4f59bb0c971e267083 *man/plotQualityScoreDis.Rd
a0f377fa6a69b1e5b01be61ef905abe1 *man/plotQualityScorePerCycle.Rd
e537e58c4e70630b463638989cc83af1 *man/plotReadFrequencies.Rd
e6f4ebe26e45e2f4699274b6fba7112c *man/plotSeqLogo.Rd
03250287e6c8cb346461a322c0882f88 *man/plotTimeSeries.Rd
0c49df19201f62e25b5d7f0f0facdc14 *man/plotVennDiagram.Rd
cdc3be47c81b25c6262fa8f1fb7686f4 *man/prepareDatObject.Rd
1f4a8c93c0245d8c5f10b20f0cd3143d *man/processingRawData.Rd
6faf14efc7dcbaf305b5897fbd7a76c4 *man/qualityFiltering.Rd
d1cb86a6482ac7c8af4a438ee22d0d18 *man/readBCdat.Rd
4819c930fe65d71ca65e7d18278c3fff *man/setBackbone.Rd
aeb214bbc2bd6971581db6db9077053d *man/setLabel.Rd
b923a3e93e89fc481605859b0087b77d *man/setReads.Rd
0523633cbb99bd0a131bb19f84b00382 *man/setResultsDir.Rd
ef69a793aa50f8f3b517d7be85e1c871 *tests/testthat.R
2234d5110a0111fd9925d5b8a8f3590a *tests/testthat/test_analysis_functions.R
c4b0f57881d4051b37a7e014819524c7 *tests/testthat/test_error_correction.R
0028d14f9632076cec0d8a0ac3862394 *tests/testthat/test_helper_functions.R
a2547add82288def4f50d8357fab1566 *tests/testthat/test_raw_data_functions.R
753a72002e4a26facfd030a12bff1696 *vignettes/genBaRcode_GUI_Vignette.Rmd
aa3f700480b328b767532b9d8cd81253 *vignettes/genBaRcode_Vignette.Rmd
d350775f25c677cd80fb89d68167c320 *vignettes/images/app0.png
7281a6ba36541a1dcff3b60e874a7416 *vignettes/images/app1.png
579cdfed589f7bc8e8bfa2141790a653 *vignettes/images/app2.png
e2d738444ab0cc60064ffabd66c2ceca *vignettes/images/app3-2.png
bdc98331430a7360be31f89e7d8aeeef *vignettes/images/app3.png
e5ca6064de16b782fe4ec5dfad83cf7d *vignettes/images/app4.png
03886626423c80b4744189a4db9be104 *vignettes/images/app5-2.png
701c6484805a34d7abe9804057e34bd9 *vignettes/images/app5-3.png
30e5b2a788fa154f27674279e9662dee *vignettes/images/app5.png
3b9d48f9d741381243a66871a5b93873 *vignettes/images/app6-2.png
07790cdacc29f90e80024605df7cea25 *vignettes/images/app6.png
8a9b390ec3ce8d833fc5a8cc0ce77173 *vignettes/images/app7-2.png
61462823956951bc85763730e22caf98 *vignettes/images/app7.png
5f57fd2862ccf0c73d0961d1c42ed5ee *vignettes/images/app8-2.png
87674ae6191f0fd630207e4e31e003c7 *vignettes/images/app8.png
87618fe1b7efbf4d0db6cda376989687 *vignettes/images/app9.png
