9521d7b69ef04a808001772cd61041ff *DESCRIPTION
ebd580a4a652929dbcf0a6540a13b879 *NAMESPACE
83cfd56100e42316715f55a938467fb3 *R/IO.R
1366093c88fe120a62d420c552470e62 *R/addINFO.R
be5c3d02b40be7e6abfb16e8f1eb1a03 *R/data.R
3001f288e7b8a302b23b0f32e270ab49 *R/filtor.R
9d6b0bed306d715e339fd0347f0b2016 *R/functionalSites.R
7010013036d2162c90a9c993843d4976 *R/geneHapR-package.R
f543ecd5e6c8d00050a7aa0e19596db6 *R/geography.R
79165656a9271579ef3c8ae49bcb4066 *R/getGenePOS.R
19b382df14d6cca4fd04560058a1256c *R/hapVisualization.R
5328cc420873ac374d7f810c204ffa33 *R/network.R
3c472f23ec441af6a9e317c0604be170 *R/phenos.R
b20c706cf58c612688b91eceaff595b0 *R/preprocessbigVCF.R
994dedf4445421f7ad022743b77645cb *R/print.R
9fc8e20db3971abe0175bda3fe667e0c *R/seqs2hap.R
de420d69e06246f70da9f310b4642b36 *R/setATGas0.R
ed447cd1eb3e3209d8a3223efbffe372 *R/vcf2hap.R
2deaac340ae9432abdb903077751d4fa *R/zzz.R
0413a904ecd401a73e3f73ac040f4210 *build/vignette.rds
63feb9f5a1098394fccb15f47fece622 *data/geneHapR_test.RData
390486d1fc252d3808510382e5a83969 *inst/doc/Introduction_of_geneHapR.R
d568f316b7600cdc48df6041dc8d07ae *inst/doc/Introduction_of_geneHapR.Rmd
68bdf16d18bb53128175ca6e61c36675 *inst/doc/Introduction_of_geneHapR.html
c9cbcc7ee10eae934be180b12e606b9d *inst/doc/geneHapR_data.R
880c487d4ca8e8fac5f1d7a82579a626 *inst/doc/geneHapR_data.Rmd
29980a8654c8e0deffc8dfb14076be37 *inst/doc/geneHapR_data.html
21a92d3de2d47e9494e185822985ca0c *inst/doc/workflow.Rmd
bc207d5a08057bce1333245e8b04a582 *inst/doc/workflow.html
feebd3cd4d1fdd213e5cd52296f21f57 *inst/extdata/annotation.gff
89c1a53853dbdbaa3023850d29f2db06 *inst/extdata/filtered1.vcf.gz
b9a8dd355cceab228b65286a3e66f1a9 *inst/extdata/filtered2.vcf.gz
45156d23f32efd19ad9162e94c5a24ce *inst/extdata/filtered3.vcf.gz
c37555b35649bb03680b9c54ff4c9f11 *inst/extdata/seqs.fa
9ee500aa06b91a6f1d0215bcd77fb8b4 *inst/extdata/var.vcf.gz
e9eb58ddd710c9e39ed46890357ae190 *man/DataSet.Rd
59203a0874b67d161b6e38274b9ba0a7 *man/SetATGas0.Rd
9e4e28cdc729a429262757c42c84d213 *man/addINFO.Rd
c5c4da5c9c39b0e4eacc799e8d4094c4 *man/ashaplotype.Rd
872532b6d93584e70754116c3440c23f *man/displayVarOnGeneModel.Rd
e6d809fcbbc12e17d9fd3bd142f2ec3b *man/filterLargeVCF.Rd
fa591dc918a6519d26ae657582e10ed4 *man/filter_vcf_by_gff.Rd
ba05367462e4f50968453c3819065470 *man/geneHapR-package.Rd
3bfb3189dcdbc766fe97f3e36fe43997 *man/getGenePOS.Rd
2f00b09a9e9d604cf08a5498637f139a *man/getGeneRanges.Rd
8db256b0eeedda83412af5f9f6969d24 *man/hapDistribution.Rd
d0886277f5e2986b49ff8c46ec588c22 *man/hapVsPheno.Rd
ea67a9820d7bad182716ea0aca1000b1 *man/hapVsPhenos.Rd
d4b6f2bd1c8f35e091c51b061932d404 *man/hap_summary.Rd
6cb559f6764455f7b3241e04b95ef516 *man/import_AccINFO.Rd
bcb3efcf478200cd61aac7c14da6dc36 *man/import_MultipleAlignment.Rd
e361f621ef7d8289a7edd5b550c3dc90 *man/import_gff.Rd
04fa8fcbca81f0d633924ccfa05df1da *man/import_hap.Rd
51e94c8f46e96d3ecd3913a77e1ce273 *man/import_seqs.Rd
b2b791da522dca4c116790183fc6c6aa *man/import_vcf.Rd
65d12bcccb33e06fff40db55626af74d *man/network.Rd
65046e3fa00faae03577428e92a5a705 *man/plotEFF.Rd
3b09206a3ce407aa28c0c4fcc4693db8 *man/plotHapNet.Rd
62725d32abf388f776e6c96dc9812d0e *man/plotHapTable.Rd
c13484a53e0142ffa34bbe3e8dff34df *man/seqs2hap.Rd
c5ea5ec9fabfa2398982e70d9ee282ed *man/siteEFF.Rd
58c9773309f2f132279e5ef3217486bd *man/vcf2hap.Rd
41398211495ab75e9d1eace31a53720c *man/write.hap.Rd
d568f316b7600cdc48df6041dc8d07ae *vignettes/Introduction_of_geneHapR.Rmd
880c487d4ca8e8fac5f1d7a82579a626 *vignettes/geneHapR_data.Rmd
5eb46e5b0dbe790ff9a17a500a6a029d *vignettes/geneHapR_workflow.png
21a92d3de2d47e9494e185822985ca0c *vignettes/workflow.Rmd
