e8debdad9d6054ad16f2abff31da6439 *DESCRIPTION
d0671ef0718a0154bd23bfea8ee98e0d *NAMESPACE
7a4a27fee530e8069d63ae81a238c800 *R/GUI_geneHapR.R
21f7885457704559c30a935d4501c72e *R/IO.R
93c7d51c879f6542b0c93894357f3a09 *R/Merge.R
fc4ba2618f0577724185069b2e0fbfbb *R/NN2AA.R
1366093c88fe120a62d420c552470e62 *R/adj_addINFO.R
985285ab0108c99a7625be6b334c450b *R/adj_setATGas0.R
41ef455a5999f7a38228d001d2c3170d *R/anno.R
3c222a72191342d752a9d0a2eab789f0 *R/data.R
febd0b813871f684185a121b1b624ba1 *R/filter.R
cdb411fedf43204c2580e24627185f6d *R/filter_preprocessbigVCF.R
7010013036d2162c90a9c993843d4976 *R/geneHapR-package.R
79165656a9271579ef3c8ae49bcb4066 *R/getGenePOS.R
61bf9f0c73f618f7a22855f8747b21aa *R/hap2hmp.R
994e84aef6a4960124fe96c447da2787 *R/hap2plink.R
1201d811794caecb98660b564d7151f3 *R/hap2seqs.R
8bc257b74c60c68bcb45ffe2898f315c *R/hap2table.R
59e875fac5f52dc807b6292c554f64cc *R/hap2vcf.R
c4c67bb49db6d0d21327e4d4d9be093d *R/lolliplot.R
b6051a66deb3c83fe7d8d7ee80c9f085 *R/print.R
e17c54ef2ca6d00b833fab5cd7abec1c *R/vis_LDheatmap.R
fb3552e223ab6dc603b181395154996f *R/vis_functionalSites.R
3ac6f5c5b12cfd71f56a1d4153b4eb5e *R/vis_geography.R
8c0343ed096a530ddca8b92de62ff7e0 *R/vis_gridplothaptable2.R
12a26f9fcd400a2e79e1925fba24bf6b *R/vis_hapVisualization.R
596876926cee14e89e44548970b53052 *R/vis_network.R
9b93e75ac9ee33f3703fc66580a338b4 *R/vis_phenos.R
926a7e5bcce3bfd24fb3fdccbbd626f9 *R/zzz.R
2836b2c5db38c9819380bd093383d89d *build/partial.rdb
9a4bb4a2586bc7bbf48223023a20ecd0 *build/vignette.rds
f0050413bf5544811153f9179def51b1 *data/china.rda
1a14aba04a1fb7309e156edf1a61fd5d *data/geneHapR_test.RData
f34bbafec4679ccb94e9535593c6e6dd *inst/doc/Introduction_of_geneHapR.R
e5da6e203d8f454b004ea1e0dfbba733 *inst/doc/Introduction_of_geneHapR.Rmd
d31093b4973973e5d08f13e1dd568957 *inst/doc/Introduction_of_geneHapR.html
54e4424a03c7f85ee0fbf857ed1f5a8c *inst/extdata/annotation.bed6
feebd3cd4d1fdd213e5cd52296f21f57 *inst/extdata/annotation.gff
89c1a53853dbdbaa3023850d29f2db06 *inst/extdata/filtered1.vcf.gz
b9a8dd355cceab228b65286a3e66f1a9 *inst/extdata/filtered2.vcf.gz
45156d23f32efd19ad9162e94c5a24ce *inst/extdata/filtered3.vcf.gz
c37555b35649bb03680b9c54ff4c9f11 *inst/extdata/seqs.fa
4fe4437e1dffb670be054339e581d459 *inst/extdata/snp3kvars-CHR8-25947258-25951166-plink.map
e6099c2938d602f0474ea133e282749a *inst/extdata/snp3kvars-CHR8-25947258-25951166-plink.ped
9ee500aa06b91a6f1d0215bcd77fb8b4 *inst/extdata/var.vcf.gz
6e4cadc6cc974db4642ae89884a99b79 *man/DataSet.Rd
00a70163e56c0bfaf695f72f0f8b4a51 *man/LDheatmap.Rd
216d29cd712a2c645ec9a9ac90d760d5 *man/SetATGas0.Rd
84f0a18a4532a89910aef842bc1e942d *man/addINFO.Rd
8964bfc419662685f9cd74388d064f45 *man/addPromoter.Rd
aa14b123d6d64a889d1d56d516d9c46b *man/ashaplotype.Rd
1d658d1c85e7bb30359d2987e989dee7 *man/displayVarOnGeneModel.Rd
bc4dab7ca05c99422f7135f9f50106b9 *man/filterLargeVCF.Rd
b098dc662f3380e5ca71043650d18446 *man/filterLargep.link.Rd
6cdf27ee5c8e39819d523b2e65541e28 *man/filter_hap.Rd
f361eecc957a606c4e92da67121ec7c7 *man/filter_hmp.Rd
236589a28c00c5a08df38fc41c3b5bb2 *man/filter_plink.pedmap.Rd
6b13ff24b43ce58133bd873392e3f971 *man/filter_table.Rd
78bcee3c371a42c05654da0c39a58bad *man/filter_vcf.Rd
ba05367462e4f50968453c3819065470 *man/geneHapR-package.Rd
3bfb3189dcdbc766fe97f3e36fe43997 *man/getGenePOS.Rd
2f00b09a9e9d604cf08a5498637f139a *man/getGeneRanges.Rd
c492fe8e82afcd9d29d443d543bedb69 *man/hap2hmp.Rd
fa8af2ff8359917aed2982d242cacf82 *man/hapDistribution.Rd
dbb4311a8876309aff7f54b03260f68a *man/hapVsPheno.Rd
35a03a9d9af206e820e865a2f4d604cd *man/hapVsPhenoPerSite.Rd
e8c973ccbeaf2b0e83f3880beb1dc6f6 *man/hapVsPhenos.Rd
d6176228a743b583869a7a75d24a28dd *man/hap_summary.Rd
708b1026648adf57130987d07da6dd2f *man/import_AccINFO.Rd
bcb3efcf478200cd61aac7c14da6dc36 *man/import_MultipleAlignment.Rd
0573afef16979f6ed4ec5c011fe6ba8a *man/import_bed.Rd
9c016011632d0f377faa754427ae4645 *man/import_gff.Rd
2bc08c3603a42cd683fd25fa8f494aff *man/import_hap.Rd
0754cd125ac167eafeaf6b80ecce72b7 *man/import_plink.pedmap.Rd
51e94c8f46e96d3ecd3913a77e1ce273 *man/import_seqs.Rd
b2b791da522dca4c116790183fc6c6aa *man/import_vcf.Rd
6857ac4109e2b73050d38750814595d6 *man/network.Rd
e775e0c5d0f6ad5887da42c9d1470439 *man/plink.pedmap2hap.Rd
31590ac5f31bf543d0a94ff7a541dec6 *man/plotEFF.Rd
7d1f6616752bb4c2fb011ff41cf7ef5b *man/plotHapNet.Rd
72c29e4f8df348fb4db2e283dd1fb72a *man/plotHapTable.Rd
524ef49202df1334961f3a2194820f56 *man/plotHapTable2.Rd
d4c3c0e86b3999d7424442e3d43ef0bd *man/seqs2hap.Rd
92e85955a164b70519bce02b4d6a67e9 *man/siteEFF.Rd
709e34c75fd93b43da2031729e0925db *man/sites_compar.Rd
e0ea21ba9928668b54cc094995cb245f *man/table2hap.Rd
769501bcc0007e9beda7756f685ebe97 *man/vcf2hap.Rd
8a3d3cbe0c513e7ae0d248b977f1c8a4 *man/windows/GUI_geneHapR.Rd
b9f8d02b15279edd05a7bfb8601524f6 *man/write.hap.Rd
08721cb861ab13e9a9b52d830e05c134 *tests/testthat.R
ba284930eff899b2086c0a1c9b6dbdcb *tests/testthat/test_plot.R
73ac89414e5d4fb3760da6d90e5d3183 *vignettes/FigS2.png
e5da6e203d8f454b004ea1e0dfbba733 *vignettes/Introduction_of_geneHapR.Rmd
ef3bb7763e4583954e9c9dc051a686d3 *vignettes/geneHapR_data.html
5eb46e5b0dbe790ff9a17a500a6a029d *vignettes/geneHapR_workflow.png
