85229028883b09ddbb4ca448e276feff *DESCRIPTION
e6ff0913dace6c894e12dd99234dc636 *NAMESPACE
2a92f423b550748c90b654878bac6911 *NEWS.md
3faaf5287f0a5f6022547c71bed722c5 *R/00-setup_data.R
c6d6a1f59b364eed80229a55e8b7b408 *R/01-qc.R
677e138ca51bf0bfc0cebe740e7aefa7 *R/02-gimap_filter.R
696f98851e5eb70a7dad07ac3a36ce46 *R/03-annotate.R
b6c0064c03a35e32504a8f604593ac81 *R/04-normalize.R
e33ceeb915ebfb19cf0d20d2d58616bd *R/05-calculate_gi.R
b101a5be832f2b205ac59045cb314179 *R/plots-gi.R
e8b2a8416bfbe9f2f7ecb25d27e91329 *R/plots-norm.R
9188b769c4657672b0d5849480ad6533 *R/plots-qc.R
71e236a7a5bd5df7fdf57bb089a857ad *R/utils.R
f6fcdee413c327e3e1db9318f430c027 *README.md
7431ea832375fe33ca9f2868833a759e *build/vignette.rds
9f1078f766770edadf2fb01929d0a0fb *inst/doc/quick-start.R
adede460dc4a446d1c62067df77e2d4d *inst/doc/quick-start.Rmd
f73aba058c09244bdd3af417c5a6719a *inst/doc/quick-start.html
2e81fdf3bf5ebd6b703cc544366fdf53 *inst/doc/timepoint-example.R
bbb1f6d9f1127d1d88e862ae0bd8b1c1 *inst/doc/timepoint-example.Rmd
7c574367175ffd66f41fab1baacb3fa3 *inst/doc/timepoint-example.html
a62edd4488aecedc0fd3a3bf39fa8461 *inst/doc/treatment_example.R
96fedca23e20d8f4fca88df8f8484ed3 *inst/doc/treatment_example.Rmd
1b7a01113df95a8c724b3a250742173f *inst/doc/treatment_example.html
37906b189500647be6f31395435b57b6 *inst/example_qc_report.Rmd
9e25401fd1a0b0aac0115efba2565bf5 *inst/example_qc_report.html
ab80f0d09d49a6a289d0798dc5178fc5 *inst/extdata/Achilles_common_essentials.csv
e8b79941a3dbe81de0aa14897f97f463 *inst/extdata/creds/encrypt_pass.rds
57a844fd64959ccf7112b119730dad91 *inst/extdata/creds/figshare_creds.rds
33bf3105ea36a8650b28913310f2913b *inst/extdata/creds/figshare_encrypt.rds
37906b189500647be6f31395435b57b6 *inst/extdata/gimapQCTemplate.Rmd
6aff4d10abcf17a27dedf04b55498e88 *inst/extdata/gimap_dataset_timepoint.RDS
eca56bb5c18d08eb79e57e877e8f5dd1 *inst/extdata/gimap_dataset_treatment.RDS
b9923f82f267220753517eabe452f833 *man/calc_gi.Rd
55d57a976bd463e9cb1523779a1d35d5 *man/cn_setup.Rd
ba69e061e9643d813af074c5b186dbf9 *man/ctrl_genes.Rd
be97e2b3350b37b1660184f98723edbf *man/delete_annotation.Rd
ad32b636b51cba0fcb194e9596024870 *man/delete_example_data.Rd
6613acd88fae875e5758d2fd4fe743d5 *man/encrypt_creds_path.Rd
a795dc2fdf28483b815af2ad614ed190 *man/example_data_folder.Rd
4c83f319de0fbe9c5657fc54d8162541 *man/get_example_data.Rd
2a221299e129f0d14144d7877fe57e83 *man/get_figshare.Rd
e569189d67a7f505c6e1ff3d243b12aa *man/gimap_annotate.Rd
77ea5b5e7496954727cc12b3bdeb1d5f *man/gimap_filter.Rd
c52c882a92696d237df0a5016276ce04 *man/gimap_normalize.Rd
e6c87c81876f60d6e903176ae9ab202c *man/gimap_object.Rd
4ab5ac5e65be5da90686bef909081157 *man/gimap_stats.Rd
3e31f2fcbb4f6690739a80dadcb65ef3 *man/key_encrypt_creds_path.Rd
f0462616001a6ffe7bdab2dd8babe820 *man/pipe.Rd
58aed86f3cdc88e71e11a77d0a857d70 *man/plot_crispr.Rd
c863b0b54c829a63630ec6d908c3bdc1 *man/plot_exp_v_obs_scatter.Rd
c0a73f2cf7570dcde5a9cae5368c78b2 *man/plot_rank_scatter.Rd
27acec0bb616cc6f7563685478afc98a *man/plot_targets_bar.Rd
a29761286ab7a039ee29ffb29d4ef96f *man/plot_theme.Rd
c8bce93a4c1850881ef928a426840f38 *man/plot_volcano.Rd
948afbd43cceba4a25ee109099a6fb0e *man/qc_cdf.Rd
7fbde7ac9ba97f65e8024559726bb971 *man/qc_constructs_countzero_bar.Rd
ffc0f7ce4edf298b746cdbed0304537a *man/qc_cor_heatmap.Rd
2841d0d9d136fdb5f49f9ec326d41e8c *man/qc_filter_plasmid.Rd
0c9f08869127be968c735125f4600fe0 *man/qc_filter_zerocounts.Rd
7393c83084bc91dac4bf1ef49efdae19 *man/qc_plasmid_histogram.Rd
ea5a4b6fbf4d18bb3ec13a9b6c3c59a8 *man/qc_sample_hist.Rd
e522d85b8c72d2db0cfe40c4a5a431a7 *man/qc_variance_hist.Rd
6016ea3d25efff657a06eff9de9f2198 *man/run_qc.Rd
aca378661763ac0f950956baa82ebda6 *man/setup_data.Rd
c53ce5271f074afde605abb3ef5a2efb *man/supported_cell_lines.Rd
dd92ad8e405b38b4c319dbefc940554e *man/tpm_setup.Rd
b3d2e8791ddaba0ac94191361a336be9 *tests/testthat.R
345ab98140885b3a71acc0d90aceaca4 *tests/testthat/test-annotate.R
bc12bc0e77c48257debfe7a8a37c3e33 *tests/testthat/test-figshare.R
3687406d5f625d68fd887aef70e84a14 *tests/testthat/test-gi-calc.R
6a3c64ab958b7b3281d19882ffdd4a95 *tests/testthat/test-normalize.R
a9154cff13197ab05529a939c87af13f *tests/testthat/test-run_qc.R
f06a4c4d3c8750b7cbe6537c947079a0 *tests/testthat/test-setup_data.R
bf17e1402636345b433834fc99e21677 *vignettes/example_qc_report.html
6bee842fd3149c165c79750c7d00f7a0 *vignettes/images/results_table.png
d0431667829a2dc53ed83504f4bc6f93 *vignettes/images/volcano_plot.png
adede460dc4a446d1c62067df77e2d4d *vignettes/quick-start.Rmd
bbb1f6d9f1127d1d88e862ae0bd8b1c1 *vignettes/timepoint-example.Rmd
96fedca23e20d8f4fca88df8f8484ed3 *vignettes/treatment_example.Rmd
