6ca9d022d7756c1775b112c0669e25c3 *DESCRIPTION
e49236980d3c3cf99d03271710b1d98d *NAMESPACE
c6655225fbd4eeec35115226868b2180 *R/E_step.R
e41de56683d052f5901b4847a730152b *R/E_step_final.R
08cb48dc21565189dee1b4b4f5e4eb79 *R/E_step_final_FA.R
1372f7d416e877d31754692d9d0e30ff *R/M_step.R
722e2e24cb2240cae9e5bc4e58edaf97 *R/M_step_FA.R
dcce2ee87df63f334da3025c10749ab5 *R/RcppExports.R
76896fec80f05ed8a4ca1cc2ca7cc731 *R/SetClassDefn.R
4c93ce4d3fff8b58c32c339e6ab216b2 *R/basal_dataset.R
9eb924816915af44f60cc1cb4a6eb10e *R/checks.R
792abc98dccfe9c16baf14630ccb30e9 *R/control_options.R
68f5c24135a2c2241d79d3e0a369c118 *R/estimate_r.R
850ac6e8ccead197d520ae3f0fb4f770 *R/family_export.R
ae518efc2e7bf89670068ba6889430a9 *R/fit_dat.R
3ea27e0722ca8cdd4502bcb543b5f4fd *R/fit_dat_FA.R
a71751f8ab164abeeab0fbe0edcacaa1 *R/formula_data_edits.R
b577f362fcd116384918f6de4674fc5b *R/glmmPen.R
9a08f4756d53fa20e2aef970389e377e *R/glmmPen_FA.R
d9220c640655098527ce7861e27ffa6f *R/logLik_Pajor.R
35e3870ae74291c139b46c61cb0a58f3 *R/logLik_Pajor_FA.R
41a0d209b12ad84b61bbfa55063aeb15 *R/methods.R
0bd6ab2041f870d7b2dcddcdbf2da167 *R/prescreen.R
e9502d3b8a2296095dc3ed8471590e42 *R/prescreen_FA.R
91d6bacebd47e5ec7de58c186e882e3f *R/sample_mc_functions.R
b804a487da181985bc31792b78273f51 *R/select_tune.R
398e4940f01be67008343e1fac6dad9d *R/select_tune_FA.R
b41e3b541ce29d3d674c4efcb8a562bb *R/sim_generation.R
5e8c3212e403741dd03863a0165ec57e *R/sim_generation_FA.R
e96e4df78882b52776d9a5f8de0a36c4 *R/stanmodels.R
4d12334d55bdf0cb6267f4c3dd7aa204 *R/var_start_init.R
c06b4593d1a3b496f92333671e032ede *README.md
1cc60bdd8610449d30184e0bb374bf46 *configure
363506993327ae3b7de4216fa3a1aa2b *configure.win
3240102badcd0213ee167e2ea2590852 *data/basal.RData
15b6ff4cd8e07508d48fdcfb9d66bf6e *inst/glmmPen_1.5.2.11.pdf
855c064dbf8deaff96c8dc8a87169109 *inst/include/stan_meta_header.hpp
1f8d9f97de86e3b68b558e8ba574cb6e *inst/stan/binomial_logit_model.stan
6781327e956f09bdc646d43492e191f4 *inst/stan/gaussian_identity_model.stan
0a69072d1af781bf21b9b4abb3ed1a29 *inst/stan/include/license.stan
6012fe4099ee3dec495bf2dba4fc8ec7 *inst/stan/poisson_log_model.stan
f0cffcfd60e1cdb4ed15eaf551c00f53 *inst/update.R
41f957cda0761afee98964380aa243c1 *man/LambdaSeq.Rd
a1022035fafd2dbbae344084283ed179 *man/adaptControl.Rd
142c6287d5bf77e59ef6fd6aa3230dd5 *man/basal.Rd
20055672f8f600a186ba9e8f286653a3 *man/glFormula_edit.Rd
b58b862aafda936740a12588bf692be9 *man/glmm.Rd
c0a832de62fe187627ee4f68d468d3de *man/glmmPen.Rd
9f6d4c82e5afba0d73a586adc32f35ad *man/glmmPen_FA.Rd
2c0ec17c395acb1fcd97298a396b76a8 *man/glmm_FA.Rd
7bec561f360901f45db4fe82495f9065 *man/lambdaControl.Rd
f45497ecce6fcbe1230f50cc4997505c *man/optimControl.Rd
285396fcbbea11c330fa84c0e8786a27 *man/pglmmObj-class.Rd
3ef86a4ab78c8698652cc72fa15ed092 *man/plot_mcmc.Rd
4b3c2eb9202bcf66db69845f8a169523 *man/rControl.Rd
a84292a1cebeba67ce62de7c98acf63c *man/sim.data.Rd
763c784cb4a40e2f15482cba532236b7 *src/Makevars
b3fb5a2a401392359b25252320728e4b *src/Makevars.win
37da9529b52d49a89466f996f5c933c8 *src/RcppExports.cpp
9634a799446df4b1c2dd3864969dd7f4 *src/coord_descent.cpp
bf71ccb423430cb45d9482aa641cf87c *src/grp_CD_XZ_FA_step.cpp
0ee98a4892d19992a0231d9ba39987d1 *src/grp_CD_XZ_step.cpp
f904296acda1b863e5df382ab5d54f68 *src/penalties.cpp
3c77965c41a0ded4474793c577534605 *src/pglm_fit.cpp
7b6b7ab59186d8daddd5e427c218306c *src/sample_mc_inner_gibbs.cpp
e415c7572e99dad15ce70561c956825f *src/sample_mc_random_walk.cpp
bce917847550119a0dbf636d6b1a12cf *src/stanExports_binomial_logit_model.cc
cdbe112733b864ee0d0e52f9f6a8680b *src/stanExports_binomial_logit_model.h
042b0fe31d1743ba7023d7f6e148b2c9 *src/stanExports_gaussian_identity_model.cc
c15a7d33ac6bce677cde21947bdc2a9f *src/stanExports_gaussian_identity_model.h
1b7e853ff8b69ee6120af6a5ce46c04a *src/stanExports_poisson_log_model.cc
810e7d9a198e077431d2b944a54f6f80 *src/stanExports_poisson_log_model.h
664902e5955038dbf4353a0c11d8e03e *src/utility_CD.h
baf0f7048b682468059051afc23bd857 *src/utility_FA.cpp
e7103240f271d7a66d0317e71a2cf654 *src/utility_glm.cpp
d21b973817f9707ff4b788586b0333a8 *src/utility_glm.h
14b8581eec1f2b766f4f912f7fba7cb9 *src/utility_grpCD.cpp
adac520570a035d077950c45146b4fed *tests/testthat.R
de69181caee6cea89f9fa6562a6ed00c *tests/testthat/test-args-input.R
97da9b0409bb54f649f592bdd50748df *tests/testthat/test-data-input.R
