18388779617c9e7adfa37279eb16c173 *DESCRIPTION
5c79a679e332525b30d652be9c9fee5b *NAMESPACE
7d0cc92616e696ca25973a9ce747981d *NEWS.md
2a1da677ff62334741397b8638caabb6 *R/diagnostics.R
72cd678735e3ae45b3d057713dc0a183 *R/diffexp.R
856272dfe9b652ed728ccb71f9c2f838 *R/grandR.R
153ab5dcef881e03f30d9f3d76c07df6 *R/load.R
7d5764c0ff7d7ecb963bf9133fc62b36 *R/modeling.R
f422e8a5e442b528d733ba9d846521fb *R/paramest.R
2acfc25507f3c06f4a035eb8432d6c33 *R/plot.R
56cea644796ab53fa95dc239ee0e001b *R/processing.R
a606be65f89ce10704e1c1235c1be0b3 *R/readsimulator.R
2f59b30313ebf54555de9ebff5d99865 *R/seurat.R
7aa77a104bb9529da2615e5eebfa862b *R/shiny.R
e50ef06c9bb64d091a68ff817f592c57 *R/toxicity.R
aacfa2af51ecec76820cb21b790c5ada *R/utils.R
344cfe703744771397f56611d12f12da *README.md
d94efc964622442576e159b85b570317 *build/vignette.rds
26c713bdb49f07926566fee8c581a585 *inst/CITATION
658aa15628a296440698a58096bde5c8 *inst/doc/getting-started.R
9b8e7b77590b613ade0816aca7a5f126 *inst/doc/getting-started.Rmd
5747b9ec3811b2585bd76d0b54c703d8 *inst/doc/getting-started.html
823db2d3bef374f5291d0e55b1f4fba1 *inst/extdata/BANP.tsv.gz
607bd8f621c84edf64df5d84e5315b52 *inst/extdata/sars.tsv.gz
c4c34076ce92f5f889b41bcd40762dce *man/Analyses.Rd
d46fcbb8809e65cde3d5a1c6586cfc89 *man/AnalyzeGeneSets.Rd
371126de63111314e7e070ed7fbc55a8 *man/ApplyContrasts.Rd
1b857eb3f9b6f1e64d51db0a309c59bf *man/CalibrateEffectiveLabelingTimeKineticFit.Rd
31f1e2a7a4ca6d614e60665eadc9d725 *man/CalibrateEffectiveLabelingTimeMatchHalflives.Rd
b43887756bf50a8952cdcf65bc53ca49 *man/ClassifyGenes.Rd
c03793916eeabfd71ab4db7d6bf97517 *man/Coldata.Rd
0b49d76e49407b42dae92dac8da42303 *man/ComputeAbsolute.Rd
99f4e14765da751f4376450ad27665f6 *man/ComputeExpressionPercentage.Rd
b6bf642b934f6a4be35321314391c40e *man/ComputeNtrPosteriorQuantile.Rd
c38feb422a80d912762808db40bd594f *man/ComputeSteadyStateHalfLives.Rd
cd0129ac78f239ca7789967e2f9c86b1 *man/Condition.Rd
7638e0ae9612fc75b2f20e1f23238bfb *man/DefaultSlot.Rd
fe039a4810572bf56e11be1f2d85e918 *man/Defer.Rd
c1ae98c4c28babc9e4b94c147e968ac1 *man/Design.Rd
96fb23ea3c463afe363e36486f6ac473 *man/DesignSemantics.Rd
14eab4af3f7b008b38ebcf84b1c91176 *man/EstimateRegulation.Rd
059043eb7c733a256897b18e76879b2a *man/FilterGenes.Rd
61bc384172ca657cf643e1282ef11bad *man/FindReferences.Rd
dd4e91ee7c812df633e3e27480fb9393 *man/Findno4sUPairs.Rd
656c9c400db28ed2606e4695e3522b59 *man/FitKinetics.Rd
d40e8aefe4ce31e11f6a7854651586d3 *man/FitKineticsGeneLeastSquares.Rd
0af10872309e31c1eaf043e27cecd361 *man/FitKineticsGeneLogSpaceLinear.Rd
866481328a68834b30cfdd2f35a9b4c4 *man/FitKineticsGeneNtr.Rd
421f7ec5a762861ef258631ce068b6ee *man/FitKineticsGeneSnapshot.Rd
637b8c7cbec4ee24617163fdd89e2d8c *man/FitKineticsPulseR.Rd
fc0aa093c9a0b71b0904bf6326041d44 *man/FitKineticsSnapshot.Rd
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3f4e1c8ab9fcb76f35d626ba29f85870 *man/Genes.Rd
639b2f272d4affe307980a0471ca0c4b *man/GetAnalysisTable.Rd
87e96e5a64af3d5f4ee308a75ff0a323 *man/GetContrasts.Rd
dd726e8e5d532af663c5526dd6944c96 *man/GetData.Rd
c07cb13723ec6799902ac819a8e1e966 *man/GetDiagnosticParameters.Rd
423474041091836bc2a6f825bf492560 *man/GetSignificantGenes.Rd
94c4ffceff46b4a2ac112b0971f4b012 *man/GetSparseMatrix.Rd
f45f8b080ea05bcadf5b4b7d26631a63 *man/GetSummarizeMatrix.Rd
630f808949d7a1b7f77775b2dbab68bc *man/GetTable.Rd
49db62addfe9dc89382709ed90d664dc *man/IsParallel.Rd
fbeb4db85ca31681e7245edd2f270461 *man/LFC.Rd
c9e40bcc0ca3436202f7c9e54271ef71 *man/LikelihoodRatioTest.Rd
aca8cc773283ec18ad45b4af46ec90e7 *man/ListGeneSets.Rd
66afe4bed720b0b4c6b4eb1ae7b617f9 *man/MAPlot.Rd
4fc35e5d2b84445db34a3e28bc9e70f3 *man/MakeColdata.Rd
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52ae5a9f4e2c26fa433eedca5e3adee7 *man/PairwiseDESeq2.Rd
2065b2e5a61968f68b2215a7304eef81 *man/PlotAnalyses.Rd
9090a340e49240ecdf713d8d11fdd7cf *man/PlotConversionFreq.Rd
3aec139ee77d52cbc770b17d29c17d23 *man/PlotGeneGroupsBars.Rd
0c3a969fc497bb9c63ffac81c5a1dfdd *man/PlotGeneGroupsPoints.Rd
3b06b072fad2be21b0463332a7ee0ac5 *man/PlotGeneOldVsNew.Rd
66e241e350a76b97b7cf54008827a56e *man/PlotGeneProgressiveTimecourse.Rd
ddf9681258103095050d6c85f4ea3ab7 *man/PlotGeneSnapshotTimecourse.Rd
0197908703a1a7b7e0100dda4d5acd64 *man/PlotGeneTotalVsNtr.Rd
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679cf19a8967127367d94efc2b0d1aad *man/PlotMismatchPositionForSample.Rd
2d6a02cb1435cd28ca1db5121b0adf02 *man/PlotMismatchPositionForType.Rd
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5ceeb74d586f9b5b30e94a9b415ab2d9 *man/PlotModelCompareErr.Rd
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fc8fe2e3997a2cc819f2cd3a93ce4a30 *man/PlotModelCompareLL.Rd
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b9a679b975b22ce515abcb02ce758de1 *man/PlotModelNtr.Rd
22d262a8a54da5b0a9478a0b12d1c0f5 *man/PlotModelShape.Rd
76802e116f00972476d3fcbe580670f2 *man/PlotPCA.Rd
97b0785585de70c9574adcc5a3d343ea *man/PlotProfileLikelihood.Rd
f86381392752c560f0d0bd69824cbddf *man/PlotScatter.Rd
743799a0edceccab9d0cb35ac6565ca4 *man/PlotSimulation.Rd
196615efdcbdd33625184cf6fc589193 *man/PlotTypeDistribution.Rd
7de615af4c37fee6422e5663da99ee20 *man/Plots.Rd
5960a23352fd65e80dddb92b512f575b *man/ReadGRAND.Rd
0831286756377f5534e581f6781a7170 *man/ReadGRAND3.Rd
a724fc727c2a7ee6cc0b0462976e3736 *man/RotatateAxisLabels.Rd
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de5b044a4f04588e77b9c632aff59a77 *man/Semantics.time.Rd
60c69edd6bc99a149bd5c80fa6fb2a3a *man/ServeGrandR.Rd
1eed6aa16607b6114aeba4fdce595d00 *man/SetParallel.Rd
1f967bd4051b88b168e0eb527c06c105 *man/SimulateKinetics.Rd
9aa16e5aee1313ffc3a8a79c19e80596 *man/SimulateReadsForSample.Rd
2ec39dde3a1d5b1d2a7cd14c79cf18cb *man/SimulateTimeCourse.Rd
037f3889b7770589aed488899f8ef958 *man/Slots.Rd
cc14a2e95d2c238fd06848e7686eebaf *man/ToIndex.Rd
10086a726189a106ba0088fcfeb340ec *man/Transform.no.Rd
5c48c9e23b89985d4e63ef347adc7696 *man/TransformSnapshot.Rd
8b25c3ab12a43c39e6e7e4b684b893dd *man/VulcanoPlot.Rd
499dcacef34bfa038a81fd64193107b0 *man/check.analysis.Rd
2766fc1deaaf38c116b6aab894f6dee0 *man/data.apply.Rd
0dcdac598f09d3a8ddd5e6e746187042 *man/density2d.Rd
154267811a2ca134c8d30a38c63ee103 *man/estimate.dispersion.Rd
ee1ae5cbc15d09e9f71da8b4ff4ae683 *man/f.old.equi.Rd
b2c02aa4949bc320c4ab0694dd605ae5 *man/get.mode.slot.Rd
2008df49c93792e94f03f4e65b554150 *man/grandR.Rd
6a37b7c6eed4daf9e6a83033f7941054 *man/psapply.Rd
78ac1d901aae1ae52e1b9588e83da7d9 *man/structure2vector.Rd
01af2af7ddfbb11a984e0717a47c42ff *man/toxicity.Rd
9b8e7b77590b613ade0816aca7a5f126 *vignettes/getting-started.Rmd
