32d7577e08774a0b49692640ccc36b64 *DESCRIPTION
79d970b4bc66dc5e8196a8d9bb8543dd *NAMESPACE
a3a0fd9be65336045821ae321c60b52a *NEWS.md
9b9d37f5043516844b4093c132fb3d68 *R/diagnostics.R
60b77fe13e557f4c253fdd196cdfb6fc *R/diffexp.R
5e971b80cf57cb4734268eadd96c1c5a *R/dropout.R
12be8131066348b7cc483238448b436a *R/grandR.R
ecc0f92d18da011ff8bcfcaae448d498 *R/load.R
adeeb023cbaa2518b2cf755c3511fd74 *R/modeling.R
96a9ce9e9e596ca851aca382f0aa80e2 *R/paramest.R
05372d23272b3266c81bf0cf835ddd44 *R/plot.R
f6b0572200b747931471480deff942f9 *R/processing.R
a606be65f89ce10704e1c1235c1be0b3 *R/readsimulator.R
67de7dd6f16fd97df0e150a60a2ed933 *R/seurat.R
ebf5495ceaf8c91ae275b741638903f3 *R/shiny.R
c2db8c4df8784d79c76888cacba4d8cf *R/utils.R
c405ebd4a8a76395b36d5a2e8a2554b4 *README.md
716b51680616331ce7fe0d3305a7a05a *build/vignette.rds
7b8529e5186f10e2268221de19045a31 *inst/CITATION
10c52003ae5df834c9f54b5d62cf905e *inst/doc/getting-started.R
384fa859b400d1c5cf23f599eb4b3876 *inst/doc/getting-started.Rmd
a9873e028c14ad010d1d300861c67e2d *inst/doc/getting-started.html
823db2d3bef374f5291d0e55b1f4fba1 *inst/extdata/BANP.tsv.gz
607bd8f621c84edf64df5d84e5315b52 *inst/extdata/sars.tsv.gz
d03c9f33fd75f210231e95710bbb99f0 *man/Analyses.Rd
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371126de63111314e7e070ed7fbc55a8 *man/ApplyContrasts.Rd
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31f1e2a7a4ca6d614e60665eadc9d725 *man/CalibrateEffectiveLabelingTimeMatchHalflives.Rd
b43887756bf50a8952cdcf65bc53ca49 *man/ClassifyGenes.Rd
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0a7a7a2072c78c7d3fcd0ed125d0fa4e *man/ComputePseudoNtr.Rd
836efd6021b1c692868a5127faa57fde *man/ComputeSteadyStateHalfLives.Rd
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5257d8f062c40f1180e52a382769692f *man/CreatePdfs.Rd
ec56a50f8f389d4715d39984fa53eb59 *man/DESeq2BIC.Rd
7638e0ae9612fc75b2f20e1f23238bfb *man/DefaultSlot.Rd
89c33e9ea68736e2f8ce4840c99a11b6 *man/Defer.Rd
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6dc6c3dc4b6fab855cc43bcf4748706b *man/DesignSemantics.Rd
4ac8ff6380906548a7b7796b77d638cd *man/EstimateRegulation.Rd
059043eb7c733a256897b18e76879b2a *man/FilterGenes.Rd
61bc384172ca657cf643e1282ef11bad *man/FindReferences.Rd
dcde36dd7b15ddc373eaa95719e64952 *man/Findno4sUPairs.Rd
eac3ab76e70741f5671e6aef3138a5e2 *man/FitKinetics.Rd
7b109c4252ec574305eab3b524b1966e *man/FitKineticsGeneLeastSquares.Rd
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866481328a68834b30cfdd2f35a9b4c4 *man/FitKineticsGeneNtr.Rd
2d711f0141e8f6896d37150d76d40726 *man/FitKineticsGeneSnapshot.Rd
637b8c7cbec4ee24617163fdd89e2d8c *man/FitKineticsPulseR.Rd
534b6d68ea248220bfde2d949cdcafc9 *man/FitKineticsSnapshot.Rd
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c31b51e5f05357ee6eeef79b104a84dd *man/GeneInfo.Rd
3f4e1c8ab9fcb76f35d626ba29f85870 *man/Genes.Rd
639b2f272d4affe307980a0471ca0c4b *man/GetAnalysisTable.Rd
4764b1fcc2906b4a3cbe0dd0ab14cd5b *man/GetContrasts.Rd
dd726e8e5d532af663c5526dd6944c96 *man/GetData.Rd
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70e94b8c87d6c87412c2743ed28466f3 *man/GetMatrix.Rd
423474041091836bc2a6f825bf492560 *man/GetSignificantGenes.Rd
f45f8b080ea05bcadf5b4b7d26631a63 *man/GetSummarizeMatrix.Rd
c8306a5fe4ca0037277a7a77aed936b3 *man/GetTable.Rd
49db62addfe9dc89382709ed90d664dc *man/IsParallel.Rd
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1ef97898f73ee94a53bdf081ca468853 *man/LikelihoodRatioTest.Rd
aca8cc773283ec18ad45b4af46ec90e7 *man/ListGeneSets.Rd
66afe4bed720b0b4c6b4eb1ae7b617f9 *man/MAPlot.Rd
4fc35e5d2b84445db34a3e28bc9e70f3 *man/MakeColdata.Rd
df32d856ac59f419a01aff08184028e2 *man/Normalize.Rd
dead6906a77432a7a08b0206053dc839 *man/NormalizeBaseline.Rd
34e080c3d06d61634e27d0880502de48 *man/Pairwise.Rd
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2065b2e5a61968f68b2215a7304eef81 *man/PlotAnalyses.Rd
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66e241e350a76b97b7cf54008827a56e *man/PlotGeneProgressiveTimecourse.Rd
28f0e63637b7430b51222ca985fbbbab *man/PlotGeneSnapshotTimecourse.Rd
2d57f307e317a1220a5744bdc44e5a5a *man/PlotGeneTotalVsNtr.Rd
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679cf19a8967127367d94efc2b0d1aad *man/PlotMismatchPositionForSample.Rd
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fc8fe2e3997a2cc819f2cd3a93ce4a30 *man/PlotModelCompareLL.Rd
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b9a679b975b22ce515abcb02ce758de1 *man/PlotModelNtr.Rd
22d262a8a54da5b0a9478a0b12d1c0f5 *man/PlotModelShape.Rd
82a5896e9a951c950c47337a3bc1c280 *man/PlotPCA.Rd
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743799a0edceccab9d0cb35ac6565ca4 *man/PlotSimulation.Rd
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7de615af4c37fee6422e5663da99ee20 *man/Plots.Rd
07543d63981fad85557f244da5d6eafc *man/ReadCounts.Rd
238050b403c859c3546f614a659bcfb3 *man/ReadGRAND.Rd
0831286756377f5534e581f6781a7170 *man/ReadGRAND3.Rd
e0b89722c2c3229e7f67ba6c02fd9570 *man/ReadNewTotal.Rd
a724fc727c2a7ee6cc0b0462976e3736 *man/RotatateAxisLabels.Rd
08dc91c8a610be185c70549c154eb580 *man/SaveNtrSlot.Rd
63884e13f813f5fc2bf2f3e75583adac *man/Scale.Rd
f713599a7a4cd847576eea13146690fa *man/Semantics.concentration.Rd
de5b044a4f04588e77b9c632aff59a77 *man/Semantics.time.Rd
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1eed6aa16607b6114aeba4fdce595d00 *man/SetParallel.Rd
1f967bd4051b88b168e0eb527c06c105 *man/SimulateKinetics.Rd
9aa16e5aee1313ffc3a8a79c19e80596 *man/SimulateReadsForSample.Rd
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49c1600e72720aa111108248a3b5d2f3 *man/Slots.Rd
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28c257fe136a0a04e8456841cdf870c8 *man/UpdateSymbols.Rd
542ea4de81e3d96450b1d5019573813d *man/UseNtrSlot.Rd
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57e0b02ebbb4c08b9ebe3ee8b4623ca3 *man/as.Seurat.grandR.Rd
499dcacef34bfa038a81fd64193107b0 *man/check.analysis.Rd
2766fc1deaaf38c116b6aab894f6dee0 *man/data.apply.Rd
0dcdac598f09d3a8ddd5e6e746187042 *man/density2d.Rd
451de666e9b2245a026501879d33437e *man/dropout.Rd
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3d7cd2dcd0c5933d08026fc59eb42dfb *man/figures/logo.png
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a5d0c69e7829ef32d311ccd5bcc074b9 *man/grandR.Rd
6a37b7c6eed4daf9e6a83033f7941054 *man/psapply.Rd
78ac1d901aae1ae52e1b9588e83da7d9 *man/structure2vector.Rd
cf42cdcdb75862ba64e56dc5d938cd39 *src/fastsparsemat.c
114c0c24120fb5d45f330ef0e22db3b4 *src/packagename_init.c
384fa859b400d1c5cf23f599eb4b3876 *vignettes/getting-started.Rmd
