2006-11-14 22:25  ggorjan

	* trunk/gdata/man/combine.Rd, trunk/gdata/man/frameApply.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/fast.prcomp.R,
	  trunk/gmodels/man/ci.Rd, trunk/gplots/R/bandplot.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/lowess.R,
	  trunk/gplots/R/plot.lm.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/residplot.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/boxplot.n.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
	  R/combinations.R, R/running.R, man/ELISA.Rd, man/combinations.Rd:
	  Removed executable property

2006-08-02 22:21  warnes

	* trunk/BalloonPlotPaper/BalloonPlot.pdf,
	  trunk/BalloonPlotPaper/BalloonPlot.tex,
	  trunk/MSOfficeUtil/DESCRIPTION,
	  trunk/PathwayModeling/thesispaper/slides.tex,
	  trunk/RMCMC/DESCRIPTION, trunk/RMCMC/man/make.density.Rd,
	  trunk/Rlsf/DESCRIPTION, trunk/Rlsf/man/lsf.numcpu.Rd,
	  trunk/Rlsf/man/lsf.parRapply.Rd, trunk/Rlsf/man/scat.Rd,
	  trunk/bwRF/DESCRIPTION, trunk/bwRF/man/RF.Rd,
	  trunk/exp.ssize/inst/doc/ssize.pdf,
	  trunk/exp.ssize/inst/doc/ssize.tex, trunk/fork/DESCRIPTION,
	  trunk/fork/man/exit.Rd, trunk/fork/man/fork.Rd,
	  trunk/fork/man/getpid.Rd, trunk/fork/man/kill.Rd,
	  trunk/fork/man/signame.Rd, trunk/fork/man/wait.Rd,
	  trunk/gdata/inst/doc/gregmisc.tex,
	  trunk/gdata/man/ConvertMedUnits.Rd,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gdata/man/trim.Rd, trunk/gdata/man/unmatrix.Rd,
	  trunk/gdata/man/upperTriangle.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd,
	  trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
	  trunk/gplots/man/hist2d.Rd, trunk/gplots/man/ooplot.Rd,
	  trunk/gplots/man/overplot.Rd, trunk/gplots/man/plot.lm2.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gplots/man/residplot.Rd, trunk/gplots/man/sinkplot.Rd,
	  trunk/gplots/man/smartlegend.Rd, trunk/gplots/man/space.Rd,
	  trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	  trunk/gregmisc/DESCRIPTION,
	  trunk/gregmisc/gregmisc/DESCRIPTION.standalone,
	  trunk/gregmisc/inst/doc/gregmisc.tex, man/addLast.Rd,
	  man/assert.Rd, man/capture.Rd, man/combinations.Rd,
	  man/defmacro.Rd, man/dirichlet.Rd, man/foldchange.Rd,
	  man/invalid.Rd, man/logit.Rd, man/mixedsort.Rd, man/oddeven.Rd,
	  man/permute.Rd, man/quantcut.Rd, man/running.Rd, man/scat.Rd,
	  man/setTCPNoDelay.Rd, trunk/nws/DESCRIPTION,
	  trunk/qvalue/DESCRIPTION, trunk/qvalue/man/print.qvalue.Rd,
	  trunk/ssize/DESCRIPTION, trunk/ssize/man/pow.Rd: Update my email
	  address

2006-05-05 18:13  nj7w

	* man/combinations.Rd: Fixed minor typo - in {value} - n was
	  replaced by r

2006-05-05 16:55  nj7w

	* NAMESPACE, man/capture.Rd: Fixed minor typos

2006-03-01 19:12  warnes

	* R/smartbind.R: Add smartbind function

2006-01-18 16:28  warnes

	* man/mixedsort.Rd: Add concept tags to make mixedsort easier to
	  locate.

2005-12-21 15:23  warnes

	* DESCRIPTION: Update version number and date

2005-12-21 06:11  warnes

	* NEWS: Note changes for 2.2.3

2005-12-21 06:08  warnes

	* src/Makevars.win, src/setTCPNoDelay.c: Should now work on Windows

2005-12-20 20:25  warnes

	* src/setTCPNoDelay.c: Temporary fix to allow setTCPNoDelay.c to
	  compile on Windows. If compiled on windows calling setTCPNoDelay
	  will just raise an error.

2005-12-14 15:48  warnes

	* src/setTCPNoDelay.c: Change C++ comment to standard comment

2005-12-13 16:19  nj7w

	* ChangeLog: *** empty log message ***

2005-12-13 16:18  nj7w

	* trunk/gplots/ChangeLog, trunk/gplots/NEWS, NEWS: Updated NEWS and
	  removed ChangeLog

2005-12-12 22:10  nj7w

	* DESCRIPTION: Updated version for CRAN release

2005-12-08 20:21  warnes

	* src, src/setTCPNoDelay.c: Add C source code for setTCPNoDelay.

2005-12-01 16:54  nj7w

	* trunk/gmodels/man/ci.Rd, trunk/gmodels/man/coefFrame.Rd,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd,
	  trunk/gmodels/man/make.contrasts.Rd,
	  trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
	  trunk/gplots/man/overplot.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	  man/combinations.Rd, man/foldchange.Rd, man/invalid.Rd,
	  man/logit.Rd, man/mixedsort.Rd, man/oddeven.Rd, man/quantcut.Rd,
	  man/running.Rd: Updated Greg's email address

2005-11-29 22:30  warnes

	* NAMESPACE: Add UseDynLib to NAMESPACE so the shared library gets
	  properly loaded.

2005-11-29 22:25  warnes

	* R/setTCPNoDelay.R: - Remove debugging comments
	  - Change return value on success to "Success".

2005-11-22 22:54  warnes

	* NAMESPACE: NAMESPACE

2005-11-22 22:54  warnes

	* NEWS: Update news for 2.2.1 release.

2005-11-22 22:51  warnes

	* man/addLast.Rd, man/setTCPNoDelay.Rd: Fixes for R CMD check

2005-11-22 22:31  warnes

	* DESCRIPTION, NAMESPACE, R/setTCPNoDelay.R, man/setTCPNoDelay.Rd:
	  Add setTCPNoDelay() function and documentation

2005-11-22 15:46  warnes

	* R/addLast.R, man/addLast.Rd: New function 'addLast' that adds
	  functions to R's .Last() so that
	  they will be executed when R is terminating.

2005-09-22 18:12  warnes

	* DESCRIPTION, NAMESPACE, man/defmacro.Rd: More changes for
	  strmacro(), also changes for 2.1.1 release

2005-09-22 17:26  warnes

	* R/defmacro.R, R/strmacro.R, man/defmacro.Rd: Add strmaco() which
	  defines functions that use strings for macro definition

2005-09-21 18:51  warnes

	* DESCRIPTION, R/defmacro.R, man/defmacro.Rd: Add support for
	  DOTS/... arguments to defmacro

2005-09-12 15:44  nj7w

	* trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd,
	  trunk/gdata/man/unmatrix.Rd, trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/glh.test.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/ooplot.Rd, trunk/gplots/man/residplot.Rd,
	  trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/smartlegend.Rd,
	  trunk/gplots/man/space.Rd, man/assert.Rd, man/dirichlet.Rd,
	  man/permute.Rd, man/scat.Rd: Updated Greg's email

2005-09-02 22:53  nj7w

	* NAMESPACE: Exported assert

2005-09-02 22:53  nj7w

	* DESCRIPTION: Updated the version number

2005-09-02 22:52  nj7w

	* NEWS: Added NEWS

2005-09-02 22:52  nj7w

	* ChangeLog: Added ChangeLog

2005-09-02 22:51  nj7w

	* man/assert.Rd: Fixed syntax errors

2005-09-02 16:43  warnes

	* R/assert.R, man/assert.Rd: Add assert() and documentation

2005-09-02 16:28  warnes

	* man/defmacro.Rd: Fix problem in defmacro.Rd file: don't use
	  \code{} in the example section.

2005-08-31 20:00  warnes

	* DESCRIPTION, NAMESPACE, R/defmacro.R, man/defmacro.Rd: Adding the
	  defmacro() function, extracted from
	  
	  Lumley T. "Programmer's Niche: Macros in {R}", R News, 2001, Vol
	  1,
	  No. 3, pp 11--13, \url{http://CRAN.R-project.org/doc/Rnews/}

2005-08-31 16:18  warnes

	* DESCRIPTION, DESCRIPTION.in: Add stand-alone DESCRIPTION file and
	  remove old DESCRIPTION.in file.

2005-06-13 17:08  nj7w

	* R/mixedsort.R: Fixed a bug in mixedsort - check if "which.na" and
	  "which.blank" is numeric(0) before subsetting the datasets.

2005-06-09 14:20  nj7w

	* trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R,
	  trunk/gdata/R/combine.R, trunk/gdata/R/elem.R,
	  trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/R/unmatrix.R, trunk/gdata/inst/perl/IO/AtomicFile.pm,
	  trunk/gdata/inst/perl/IO/InnerFile.pm,
	  trunk/gdata/inst/perl/IO/Lines.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm.html,
	  trunk/gdata/inst/perl/IO/ScalarArray.pm,
	  trunk/gdata/inst/perl/IO/Stringy.pm,
	  trunk/gdata/inst/perl/IO/Wrap.pm,
	  trunk/gdata/inst/perl/IO/WrapTie.pm,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd,
	  trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
	  trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
	  trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
	  trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/1,
	  trunk/gplots/man/bandplot.Rd, trunk/gplots/man/barplot2.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd,
	  trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
	  R/RSCompat.S, R/combinations.R, R/dirichlet.R, R/foldchange.R,
	  R/invalid.R, R/logit.R, R/mixedsort.R, R/oddeven.R, R/permute.R,
	  R/quantcut.R, R/running.R, R/scat.R, man/ELISA.Rd,
	  man/combinations.Rd, man/dirichlet.Rd, man/foldchange.Rd,
	  man/invalid.Rd, man/logit.Rd, man/mixedsort.Rd, man/oddeven.Rd,
	  man/permute.Rd, man/quantcut.Rd, man/running.Rd, man/scat.Rd:
	  Updating the version number, and various help files to
	  synchronize splitting of gregmisc bundle in 4 individual
	  components.

2005-05-10 22:05  warnes

	* R/mixedsort.R: Fix handling of NA's in mixedorder. We were using
	  a high UTF character to try
	  to put NA's at the end of the sort order, but R 2.1.0 checks if
	  characters
	  are in the correct range. Instead, we explicitly force NA's to
	  the end.

2005-04-07 00:28  warnes

	* NAMESPACE, R/scat.R, man/scat.Rd: - Add scat() function which
	  writes its arguments to stderr and
	  flushes so that output is immediately displayed, but only if
	  'getOption("DEBUG")' is true.

2005-04-02 04:19  warnes

	* trunk/gdata/NAMESPACE, trunk/gdata/R/drop.levels.R,
	  trunk/gdata/man/drop.levels.Rd, NAMESPACE, R/drop.levels.R,
	  man/drop.levels.Rd: Move drop.levels() from gtools to gdata.

2005-04-02 04:17  warnes

	* R/mixedsort.R: Minor reordering of functions in file

2005-04-02 04:14  warnes

	* trunk/gdata/NAMESPACE, trunk/gdata/R/frameApply.R,
	  trunk/gdata/man/frameApply.Rd, NAMESPACE, R/frameApply.R,
	  man/frameApply.Rd: Move frameApply() to gdata package.

2005-04-02 03:28  warnes

	* R/mixedsort.R: Fix error if only one value passed to mixedorder.

2005-04-02 02:37  warnes

	* R/quantcut.R, man/quantcut.Rd: Add proper handling where more
	  than one quantile obtains the same value

2005-04-01 23:00  warnes

	* man/ELISA.Rd, man/combinations.Rd, man/dirichlet.Rd,
	  man/drop.levels.Rd, man/foldchange.Rd, man/invalid.Rd,
	  man/logit.Rd, man/mixedsort.Rd, man/oddeven.Rd, man/permute.Rd,
	  man/quantcut.Rd, man/running.Rd: Add CVS ID tag to file headers.

2005-04-01 23:00  warnes

	* R/frameApply.R, man/frameApply.Rd: Fixes from Jim Rogers for R
	  CMD check problems in frameApply

2005-03-31 19:03  warnes

	* R/drop.levels.R, R/frameApply.R, man/drop.levels.Rd,
	  man/frameApply.Rd: Updates to drop.levels() and frameApply() from
	  Jim Rogers

2005-03-31 19:01  warnes

	* data, data/ELISA.rda, man/ELISA.Rd: Add ELISA data set used by
	  frameApply and drop.levels examples

2005-02-25 23:02  warnes

	* man/frameApply.Rd: Replace 'T' with TRUE.

2005-02-25 22:54  warnes

	* man/frameApply.Rd: Remove dependency on ELISA data set for the
	  example.

2005-02-25 21:00  warnes

	* trunk/gregmisc/.tnatr:fnmap, trunk/gregmisc/DESCRIPTION,
	  NAMESPACE: Add drop.levels, frameApply to namespace export.

2005-02-15 00:41  warnes

	* R/drop.levels.R, R/frameApply.R, man/drop.levels.Rd,
	  man/frameApply.Rd: Add frameApply and drop.levels contributed by
	  Jim Rogers.

2005-01-12 20:50  warnes

	* trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION.in, DESCRIPTION.in: Add dependency on R
	  1.9.0+ to prevent poeple from installing on old
	  versions of R which don't support namespaces.

2004-09-27 21:01  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION, trunk/gplots/DESCRIPTION.in,
	  trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd,
	  trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
	  DESCRIPTION, DESCRIPTION.in, man/running.Rd: Updated to pass R
	  CMD check.

2004-09-03 17:27  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R,
	  trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/DESCRIPTION,
	  trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, trunk/gplots/DESCRIPTION,
	  trunk/gplots/NAMESPACE, trunk/gplots/R/balloonplot.R,
	  trunk/gplots/R/bandplot.R, trunk/gplots/R/barplot2.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
	  trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
	  trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
	  trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
	  trunk/gplots/R/wapply.R, DESCRIPTION, NAMESPACE, R/dirichlet.R,
	  R/foldchange.R, R/invalid.R, R/mixedsort.R, R/oddeven.R,
	  R/permute.R, R/quantcut.R, R/running.R, man/running.Rd: initial
	  bundle checkin

2004-09-02 17:14  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  trunk/gmodels/NAMESPACE, trunk/gplots/DESCRIPTION,
	  trunk/gplots/DESCRIPTION.in, trunk/gplots/NAMESPACE,
	  trunk/gplots/man/1, trunk/gplots/man/residplot.Rd,
	  trunk/gregmisc/.Rhistory, DESCRIPTION, DESCRIPTION.in, NAMESPACE:
	  Initial revision

2004-08-27 21:57  warnes

	* trunk/gdata/R/reorder.R, trunk/gdata/man/reorder.Rd,
	  R/mixedsort.R, man/mixedsort.Rd: Fixed bug in mixedsort, and
	  modified reorder.factor to use mixedsort.

2004-08-26 20:08  warnes

	* R/mixedsort.R: - Fix bug pointed out by Jim Rogers.
	  - Use a more distictive internal separator: $@$ instead of just $
	  - Capitalization is now irrelevent for search order (unlike
	  ASCII).

2004-06-08 15:49  warnes

	* R/running.R, man/running.Rd: Nitin Jain added by= parameter to
	  allow specifying separation between groups.

2004-05-26 13:40  warnes

	* trunk/gdata/man/read.xls.Rd, man/combinations.Rd: Escape
	  underscores in email addresses so Latex is happy.

2004-05-26 13:18  warnes

	* R/combinations.R: Replace 'T' with 'TRUE' to pass R CMD check.

2004-05-25 17:11  warnes

	* R/combinations.R: Remove extraneous comments.

2004-05-25 17:08  warnes

	* R/combinations.R: Fix an error in the code when using
	  repeats.allow=T and r>2. Bug
	  report and fix both due to Elizabeth Purdom
	  <epurdom@stanford.edu>.

2004-05-24 17:36  warnes

	* R/invalid.R: Check if argument is a vector before doing is.na to
	  avoid generating a warning.

2004-05-24 17:17  warnes

	* R/invalid.R, man/invalid.Rd: Add invalid() function for testing
	  if a parameter value is non-missing, non-NA,
	  non-NULL.

2004-04-27 14:33  warnes

	* R/running.R, man/running.Rd: Replaced argument `as.list' with
	  `simplify'. Updated documentation,
	  and updated examples appropriately.

2004-04-26 16:37  warnes

	* R/running.R, man/running.Rd: Added as.list argument to return one
	  list element per evaluation.

2004-03-26 22:21  warnes

	* man/combinations.Rd: Uncomment and fix large 'n' example.

2004-03-26 22:19  warnes

	* man/running.Rd: - Update to match changes in running()
	  - Add examples to illustrate new arguments.
	  - Modify running correlation plot example to be more clear.

2004-03-26 22:12  warnes

	* R/running.R: More of the same.

2004-03-26 15:34  warnes

	* R/running.R: Fix bug discovered by Sean Davis
	  <sdavis2@mail.nih.gov>. The running
	  function took an improper shortcut. When allow.fewer=FALSE it was
	  still passing shorter lists of elements to the called function,
	  and
	  then overwriting the results for the shorter lists with NAs. The
	  code
	  now skips evaluation of the function on lists shorter than the
	  specified length when allow.fewer=FALSE.

2004-01-21 04:31  warnes

	* trunk/gplots/R/textplot.R, R/capture.R: - Mark sprint() as
	  depreciated.
	  - Replace references to sprint with capture.output()
	  - Use match.arg for halign and valign arguments to
	  textplot.default.
	  - Fix textplot.character so that a vector of characters is
	  properly
	  displayed. Previouslt, character vectors were plotted on top of
	  each
	  other.

2003-12-03 02:46  warnes

	* trunk/gdata/man/elem.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/textplot.Rd,
	  trunk/gplots/man/wapply.Rd, man/foldchange.Rd: - match function
	  argument defaults with 'usage'

2003-11-21 23:00  warnes

	* man/foldchange.Rd: Removed 'deqn' call that was confusing things.

2003-11-21 20:54  warnes

	* man/logit.Rd: Add email address to author field

2003-11-21 20:35  warnes

	* R/foldchange.R, man/foldchange.Rd: - new files

2003-11-21 19:54  warnes

	* R/mixedsort.R, man/mixedsort.Rd: - Change 'T' to 'TRUE' in
	  mixedsort.R
	  - Add missing brace in mixedsort.Rd

2003-11-20 15:56  warnes

	* R/oddeven.R, man/oddeven.Rd: - Move 'odd' and 'even' functions to
	  a separate file & provide documentation

2003-11-18 22:47  warnes

	* R/mixedsort.R, man/mixedsort.Rd: - Renamed smartsort to mixedsort
	  and added documentation.

2003-11-10 22:11  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/is.what.Rd,
	  trunk/gdata/man/keep.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/overplot.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/space.R,
	  trunk/gplots/R/wapply.R, trunk/gregmisc/DESCRIPTION, R/capture.R,
	  man/capture.Rd: - Add files contributed by Arni Magnusson
	  <arnima@u.washington.edu>. As well as some of my own.

2003-05-23 18:14  warnes

	* trunk/gdata/R/matchcols.R, trunk/gdata/man/matchcols.Rd,
	  R/logit.R, man/logit.Rd: - library() backported from 1.7-devel.
	  This version of the function
	  adds the "pos=" argument to specify where in the search path the
	  library should be placed.
	  
	  - updated .First.lib to use library(...pos=3) for MASS to avoid
	  the
	  'genotype' data set in MASS from masking the genotype funciton in
	  genetics when it loads gregmisc
	  
	  - Added logit() inv.logit() matchcols() function and
	  corresponding docs

2003-04-22 16:00  warnes

	* man/combinations.Rd: - Fixed tpyo in example that allowed
	  combinations(500,2) to run when
	  it should have been ignred for testing..

2003-04-10 16:22  warnes

	* man/combinations.Rd: - Added note about the need to increase
	  options("expressions") to use
	  large values for 'n'. Prompted by bug report from Huan Huang
	  <huan.huang@bnpparibas.com

2003-04-04 13:58  warnes

	* R/RSCompat.S: - Replace 'T' with 'TRUE'

2003-04-04 13:49  warnes

	* trunk/gplots/R/balloonplot.R, trunk/gplots/man/qqnorm.aov.Rd,
	  R/dirichlet.R: - Change occurences of 'T' to 'TRUE'

2003-04-04 13:46  warnes

	* man/capture.Rd: - Allow optional arguments to sprint to be passed
	  to print
	  - Fix R CMD check errors

2003-04-04 13:45  warnes

	* R/capture.R: - Allow optional arguments to sprint to be passed to
	  print

2003-04-03 13:20  warnes

	* man/capture.Rd: - Had mistyped 'sprint' as 'sprintf'.

2003-04-03 13:18  warnes

	* man/capture.Rd: - Add help file for capture and sprintf.

2003-04-02 22:28  warnes

	* R/capture.R: - Added file 'capture.R' containing capture() and
	  sprint().

2003-03-07 15:48  warnes

	* trunk/gmodels/R/fast.prcomp.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/qqnorm.aov.R, trunk/gregmisc/DESCRIPTION,
	  R/RSCompat.S: - Minor changes to code to allow the package to be
	  provided as an
	  S-Plus chapter.

2003-01-30 21:56  warnes

	* man/running.Rd: - Fixed typo in email address.

2003-01-02 15:42  warnes

	* R/RSCompat.S: - Add nlevels function.

2002-10-11 18:22  warnes

	* R/permute.R, man/permute.Rd: - Add permute() function (wraper for
	  sample) and man page

2002-10-11 18:21  warnes

	* man/dirichlet.Rd: - Escaped underscores in my email address that
	  was causing a parse
	  error in the {r,p}dirichlet man page.

2002-09-30 20:43  warnes

	* R/dirichlet.R, man/dirichlet.Rd: - Added rdirichlet() and
	  ddirichlet() with accompaning help page and tests.

2002-09-24 14:57  warnes

	* R/running.R: - Fixed error where running was always calling
	  running2 with
	  'fun=mean', ignoring the specified funtion.

2002-09-23 13:59  warnes

	* trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/boxplot.n.R,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/lowess.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/hist2d.Rd, trunk/gplots/man/lowess.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/space.Rd,
	  man/combinations.Rd, man/quantcut.Rd: - Modified all files to
	  include CVS Id and Log tags.

2002-09-23 13:38  warnes

	* trunk/gmodels/R/CrossTable.R, trunk/gmodels/man/CrossTable.Rd,
	  trunk/gplots/R/barplot2.R, trunk/gplots/man/barplot2.Rd,
	  trunk/gregmisc/DESCRIPTION, R/combinations.R: - Added
	  CrossTable() and barplot2() code and docs contributed by Marc
	  Schwartz.
	  - Permit combinations() to be used when r>n provided
	  repeat.allowed=TRUE
	  - Bumped up version number

2002-08-01 19:37  warnes

	* trunk/gmodels/R/ci.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/wapply.R,
	  trunk/gregmisc/DESCRIPTION, R/running.R: - Corrected
	  documentation mismatch for ci, ci.default.
	  
	  - Replaced all occurences of '_' for assignment with '<-'.
	  
	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with
	  the spelled out version.
	  
	  - Updaded version number and date.

2002-04-09 00:51  warneg

	* trunk/gdata/R/rename.vars.R, trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/glh.test.Rd,
	  trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/plot.lm.R,
	  trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/space.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/space.Rd,
	  trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  R/combinations.R, man/combinations.Rd, man/running.Rd: Checkin
	  for version 0.5.3

2002-03-26 14:49  warneg

	* man/quantcut.Rd: Initial Checkin

2002-03-26 14:29  warneg

	* R/quantcut.R: Initial checkin.

2002-03-20 03:44  warneg

	* R/RSCompat.S: - Added definition of is.R function.
	  
	  - Added boxplot.formula

2002-03-07 23:39  warneg

	* man/running.Rd: - Added documentation and example for running2

2002-03-07 23:38  warneg

	* R/running.R: - Added "running2", which handles both univariate
	  and bivariate cases
	  - Modified "running" to call "running2"

2002-02-05 02:20  warneg

	* R/RSCompat.S: - Fix typo that caused code meant to run only under
	  S-Plus to run
	  under R, causing problems.

2001-12-19 22:45  warneg

	* R/RSCompat.S: - Added code for %in%.

2001-09-18 14:15  warneg

	* trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
	  trunk/gregmisc/DESCRIPTION, R/RSCompat.S: Release 0.3.2

2001-09-01 19:19  warneg

	* R/RSCompat.S: Initial checkin.

2001-09-01 00:01  warneg

	* trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  R/running.R, man/running.Rd: Release 0.3.0

2001-08-25 05:53  warneg

	* R/running.R: Initial CVS checkin.

2001-08-25 05:50  warneg

	* man/combinations.Rd: Fixed a typo and a syntax error.

2001-08-25 03:59  warneg

	* man/running.Rd: Initial Checkin

2001-06-29 13:24  warneg

	* ., R, R/combinations.R, man, man/combinations.Rd: Initial
	  revision.

