e416ef828738ad0e7b9a4c7c151a5a2f *DESCRIPTION
ef328da3307a11e37f59ed0a374afeed *NAMESPACE
68d45b8dbbbb18d8ae6ec46d32d6807d *R/FindGenerations.R
a27a1c8cb115d183e191c3e095f8d50f *R/GenerateValues.R
db5f6af3375a7265e377dc480293b96d *R/GetModelWeight.R
178fd5a4914a28e31a53c3eee5378898 *R/bisse2hisse.R
d1b5f768098dbeb35da391d874fa8eb5 *R/fgeohisse.R
1101b9cd791c4f263ab78f720452047e *R/geohisse.R
8f7e38f15714b4ea49a82ad008ff6d8e *R/getModelAveEqFreqs.R
e0825f06c2c7b7cc3bd8a8c3dc00a4e1 *R/getModelAveTipRates.R
e5adc4dca9098d8fa6a6cde9266c8052 *R/hisse.R
b1297b9974e2618056a67942f17ed496 *R/hisseLikelihood.R
f4c2ccc31728bb43d46dece61b0c7317 *R/hisseNull4.R
b1524b8470686d1bf76f12f259b6f1a9 *R/marginRecon.R
7045676c334a68d378cc861aaa8a49d0 *R/misse.R
199529edfda073d9e66aff934d1a9f2a *R/muhisse.R
9d0ade06d212784f28967b221130f42d *R/plotContMapHiSSE.R
74b9f7ce34a39d4409ccf531d3af1190 *R/plotHisse.R
480f9335d6e4841ac331cce88676d7f8 *R/simulateGeoHiSSE.R
ce09d25f125f2fbfae2792973eefe0a0 *R/simulateHisse.R
bb937b5fbb324bef131477676cce3689 *R/singleModels.R
8d4e71a135fc9c433c961ac7d6ed6645 *R/summarizeHisse.R
8f3913b92b8fb692f1a6fae503a8a406 *R/supportRegion.R
9e22db3fb54e5ba4c997450552174a26 *R/supportRegionGeoSSE.R
f70233a1f130992ee5615c1f2664a990 *R/supportRegionMiSSE.R
aba7cbaf505aab2f383940245716d133 *R/supportRegionMuHiSSE.R
b4429827c0a94daa3832de3bc4fd8696 *R/transMat.R
a747a12503cebb49648ce5b574f1e208 *R/transMatGeoHiSSE.R
dac262bf79a47fdde5fa371ff34b2314 *R/transMatMuHiSSE.R
876521eeaf2bd5b00d3817b1a0839bba *R/transMatfGeoHiSSE.R
19dff8e86c88a86f59be4376bc96a803 *build/vignette.rds
52ec439138e7f511821bcdc563ff3425 *inst/CITATION
f54f0d6995f2303e9dd99bce566c809d *inst/doc/GeoHiSSE-vignette.R
6236abc97762fa495f04ff8621019fc0 *inst/doc/GeoHiSSE-vignette.Rmd
babb723c5caa0fef7aa2399394cc2c17 *inst/doc/GeoHiSSE-vignette.pdf
ce0eb5771c1d29ae3159637b055dad6d *inst/doc/MiSSE-vignette.R
038ee68f97896f4187dabd44ee5be0c1 *inst/doc/MiSSE-vignette.Rmd
fce3dd986d0961310ea7889ec2ee4a9b *inst/doc/MiSSE-vignette.pdf
532361604cbd257c5aec83fe332972a9 *inst/doc/MuHiSSE-vignette.R
82c759e50b472840f7edb1d13efc17fa *inst/doc/MuHiSSE-vignette.Rmd
b6fc429dcd25310a70d169b1fbeedb7e *inst/doc/MuHiSSE-vignette.pdf
8cc9e067bead8e4ab05168e99d7038a5 *inst/doc/hisse-fisse-type1-vignette.R
9631e8d61de42196cb7c4a17bb49b9ca *inst/doc/hisse-fisse-type1-vignette.Rmd
5c0b5197781d30e6cbf2c538ae73515e *inst/doc/hisse-fisse-type1-vignette.pdf
a7202427591bf5da95357c307d790666 *inst/doc/hisse-vignette.R
650a9a774113f280a572dd2be37633de *inst/doc/hisse-vignette.Rmd
557e1ccb76a758a600de68777da6910b *inst/doc/hisse-vignette.pdf
667f6f0be2899c051973ead336a69f36 *inst/extdata/conifers_reconlist.rda
c0d5cf987ae06a5972f6873833734535 *man/GeoHiSSE.Rd
fa3b09c860e3749edd21cc80bd8650c0 *man/GetAICWeights.Rd
7964bc03e8fb5c4438666097fbe79e19 *man/MiSSE.Rd
cd9e9513fdfe54f5cd067b244e044dd6 *man/MiSSEGreedy.Rd
0ec46543050c643179fef3c12c0c09e8 *man/MuHiSSE.Rd
e5ebfc24d385fe911cda11fb1cad1b7b *man/SimulateGeoHiSSE.Rd
847408e4bf81eb4300faec21a5e99a9a *man/TranslateParsMakerGeoHiSSE.Rd
a1273b3d14da7f16e248d72a979f3775 *man/bisse2hisse.Rd
6e1e3e672eca81640d0a13835290019f *man/fGeoHiSSE.Rd
e91e7d05dd53221c8ba7f7c015d33be1 *man/hisse.Rd
d33c70de1dde0cb0023e71e470bb92c4 *man/hisseNull4.Rd
356d300a4d7f6b3eb721c0823393a017 *man/makeHiSSELikelihood.Rd
e496aa71a823bd34dfab54b2d51a10c8 *man/marginRecon.Rd
32ac5c962342ff1094ba14bb37ffae1b *man/marginReconGeoSSE.Rd
2ea4bf7e699dbf6a15f01704d0a15967 *man/marginReconMiSSE.Rd
3ef3c3132fecb42c087d3dd54ebb112a *man/marginReconMuHiSSE.Rd
4f1c015b4701544797638c49777c9061 *man/marginReconfGeoSSE.Rd
57e239e77d37ab6921a842879e8caaca *man/modelAveEqFreqs.Rd
c345be6cb0bd3dd7ba34d3720a35841a *man/modelAveRates.Rd
7c52a4a5eb1f065fd1f1a920c0cbd13b *man/plotGeoHiSSE.Rd
27f86143e7ea1b814177986f1cbd4db3 *man/plotHisse.Rd
5446b20614fbdada2f87d73017de7713 *man/plotMiSSE.Rd
3ec31a53aa31b85c294de4d60354cadb *man/plotMuHiSSE.Rd
5cf4176b447ccf23db9e00df63aacf7a *man/simToPhylo.Rd
e9bf0197060c6ade64e41b6bbefef702 *man/simulateHisse.Rd
e43f25bfbd259a63c90dc584da1ef35f *man/supportRegion.Rd
950d04b1ef9d5ff371229cffa4e0059b *man/supportRegionGeoSSE.Rd
a3583d62dc2e6e5223a844927b9612e6 *man/supportRegionMiSSE.Rd
37e4e88f80f86286084b502c41bd3e4d *man/supportRegionMuHiSSE.Rd
5e695e3f26cb1dd7f700a2a44206da2f *man/transMat.Rd
32143b9a2be32213949e0c2e8d770423 *man/transMatMakerGeoHiSSE.Rd
7a7c52b3734858f89985defeb134d7e3 *man/transMatMakerMuHiSSE.Rd
a10296016f2685db54fb28ced404a642 *src/Makevars
ad5bb70b04de9bc6b1839a57968e9771 *src/bisse-ext-derivs.c
f7885bc944389187f9234b2d17c284f6 *src/canonical-musse-ext-derivs.c
9363e041611f14dd534369d377a41d59 *src/canonical_geosse-ext-derivs.c
9952215020784b392f5035c3602bf86d *src/fcanonical_geosse-ext-derivs.c
911dcda1f2765b536dd5d662129e6fa9 *src/fgeohisse-ext-derivs.c
1c26b4d39466d84eec3d47c6987e9281 *src/fnotclasse-ext-derivs.c
199dc70a894b7dc0244da12b637cb994 *src/fnotclasse-more-ext-derivs.c
9cddd52690a27a5fc28a3f413abec7bb *src/geohisse-ext-derivs.c
67ca36f548bd236265dcf4a7fd2db323 *src/hisse-ext-derivs.c
504e6bc1337de6f84cb58d6f8a569100 *src/hissenull-ext-derivs.c
3b69d7879a290ac42eff72a2fd03e119 *src/misse-ext-derivs.c
f5e553a8d7ad098e1939f3915891714d *src/muhisse-ext-derivs.c
a4e47232a92c6533072e74d695698709 *src/notclasse-ext-derivs.c
d0a6a58cd725d3e7d266cce9e903da6a *src/notclasse-more-ext-derivs.c
b4a83a3e97c587a63e0b1026f4a5034f *src/registerDynamicSymbol.c
c63bfdef238700166a40686e07021eeb *tests/testthat.R
42833c1fc7375d844503221d309be3a8 *tests/testthat/test_likelihood.R
2ed00739e87e4765e4194aba3840fe29 *tests/testthat/test_simulator.R
d0e26c588cc3367cb83bc1662408ddd9 *tests/testthat/whales_Steemanetal2009.tre
6236abc97762fa495f04ff8621019fc0 *vignettes/GeoHiSSE-vignette.Rmd
05071caa54f987f7f356ed825d8801e1 *vignettes/GeoHiSSE-vignette.html
c1a57e15934ed303719c017617d53d81 *vignettes/May2017_CID4_added_setsummaries.csv
038ee68f97896f4187dabd44ee5be0c1 *vignettes/MiSSE-vignette.Rmd
8d653728974eb968b64ecafb952c5a0f *vignettes/MiSSE-vignette.html
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415ddbf3f06a928e73d69b1a7ceb5bbc *vignettes/MuHiSSE-vignette.html
c8cb037d045dc9a65e200cc0e8f61981 *vignettes/geohisse_recons_vignette.Rsave
59790e43e3d5e122ea37793de31ac324 *vignettes/geohisse_vignette.Rsave
9631e8d61de42196cb7c4a17bb49b9ca *vignettes/hisse-fisse-type1-vignette.Rmd
2d5bcd9b309e949ccecc4ff00fbd67b7 *vignettes/hisse-fisse-type1-vignette.html
650a9a774113f280a572dd2be37633de *vignettes/hisse-vignette.Rmd
f485c706b622017f095b25ded6bcb9cf *vignettes/hisse-vignette.html
ec80340c600d1b4566615e432e23edd9 *vignettes/misse.support.Rsave
53f4ae8171ff252f5e91bd1f2a857a11 *vignettes/misse.vignette.Rsave
3c410bfae8bcdb399d7d620b900f04ef *vignettes/setCAQTipRatios.Rsave
fa6125b3b2aacc4a3fb817ad1dc11851 *vignettes/setKXHTipRatios.Rsave
88e8c85e9e7fd3a2e8354f900f527532 *vignettes/setMEVTipRatios.Rsave
f9201e5951c54ff06c528b91c8dc0506 *vignettes/testrecon1.Rsave
683c3791c94e5961175b960fcd87bf19 *vignettes/testrecon2.Rsave
bfb7211c657474305cdabf8680943047 *vignettes/testrecon3.Rsave
d0e26c588cc3367cb83bc1662408ddd9 *vignettes/whales_Steemanetal2009.tre
