b7e43c8b5f42b89b936129f24c870bf0 *DESCRIPTION
d09b1e26d8764d38ac980cb307b10acd *NAMESPACE
68d45b8dbbbb18d8ae6ec46d32d6807d *R/FindGenerations.R
a27a1c8cb115d183e191c3e095f8d50f *R/GenerateValues.R
db5f6af3375a7265e377dc480293b96d *R/GetModelWeight.R
a81cb3ea903e8a54e58ed38d3eed74ae *R/geohisse.R
38c4fe72e9a35f6b5aae1972f3048347 *R/geohisse.old.R
47023d07a983ac5239ea18c2dbfedbb4 *R/geohisseLikelihood.R
e0825f06c2c7b7cc3bd8a8c3dc00a4e1 *R/getModelAveTipRates.R
49d32f00ef1cf4d9f00f53411050d48d *R/hisse.R
454c82d496b78d1754b8e9753b88bf1a *R/hisse.old.R
6551c7617deaf3b7145e28d75beee54c *R/hisseLikelihood.R
022b0a21301c9c1d5b30a9edeb37a8a5 *R/hisseNull4.old.R
dd460a3e67ce0944062c469538b0a09f *R/marginRecon.R
2d0088ceb16c67145da8908640cb38cd *R/misse.R
2aa3bbbccfac7f5f8328f8383b071ddc *R/muhisse.R
9d0ade06d212784f28967b221130f42d *R/plotContMapHiSSE.R
eaad04fff6577f0fbf7549feb48dc408 *R/plotHisse.R
d663ced2308b348923d15a77492f22a0 *R/simulateGeoHiSSE.R
ce09d25f125f2fbfae2792973eefe0a0 *R/simulateHisse.R
bb937b5fbb324bef131477676cce3689 *R/singleModels.R
8d4e71a135fc9c433c961ac7d6ed6645 *R/summarizeHisse.R
33d2c4b27ed6c146aa12ab3055983d70 *R/supportRegion.old.R
f48f03e16ed4cfee4ae981faa72af90d *R/supportRegionGeoSSE.R
582225e9b6189d6374b320ad105c05d3 *R/supportRegionGeoSSE.old.R
c78510a50fe0c25d7bf40e1c8017c105 *R/supportRegionHiSSE.R
c5e6285e8c4fd3c8ae02c6ccd89096d4 *R/supportRegionMiSSE.R
e1735773cce53c16c94aac65aa2dc3fa *R/supportRegionMuHiSSE.R
ed7e214e7663b33be43dd0d514ee0b10 *R/transMat.old.R
1e01dcc7c8f8a4637bb79d2194d425e4 *R/transMatGeoHiSSE.R
35e0448999b9a4a1f7ffca44b687ca61 *R/transMatGeoHiSSE.old.R
23ad853769ce26f1f6fa96414229a94d *R/transMatHiSSE.R
ef21fe6c60198d54b46df814bce9d48c *R/transMatMuHiSSE.R
93e2ae9487ea874f0231807faa12c3b8 *build/vignette.rds
52ec439138e7f511821bcdc563ff3425 *inst/CITATION
7ed4e69010a64089a2e12dd72b905554 *inst/doc/Clade-specific-sampling.R
d18af873e8b3c94710d8cab9a86ea712 *inst/doc/Clade-specific-sampling.Rmd
2270ba1fd27b4225b207c6c76d8b65df *inst/doc/Clade-specific-sampling.pdf
fd390ee0845271ef99952c9dff0ae46d *inst/doc/GeoHiSSE-vignette.R
a7fe135f3f6fa179f1ce4b53dec25537 *inst/doc/GeoHiSSE-vignette.Rmd
a3de7908ab6f91b8dc93ececb195fa44 *inst/doc/GeoHiSSE-vignette.pdf
ea6976ba60b723db98ca9d4014018134 *inst/doc/MiSSE-vignette.R
53354b668924123346263978d87099ed *inst/doc/MiSSE-vignette.Rmd
330afa52ccd35f04ce816fc0644fc914 *inst/doc/MiSSE-vignette.pdf
b6f758fff85159b63fd428608eecab08 *inst/doc/MuHiSSE-vignette.R
c3bd7c6a91e75b5263a3e09433c315c2 *inst/doc/MuHiSSE-vignette.Rmd
71f0d9fe08e43c96a69999506fd95abf *inst/doc/MuHiSSE-vignette.pdf
8cc9e067bead8e4ab05168e99d7038a5 *inst/doc/hisse-fisse-type1-vignette.R
9631e8d61de42196cb7c4a17bb49b9ca *inst/doc/hisse-fisse-type1-vignette.Rmd
b793ddf68dfd56f1d77ae42803a776bb *inst/doc/hisse-fisse-type1-vignette.pdf
fd08c6c56d2c4c4a5fbe92dc54ce7b18 *inst/doc/hisse-new-vignette.R
0555bc4f48b3f265d9f9607d84364d49 *inst/doc/hisse-new-vignette.Rmd
62be68e39d8c9dce4955d7b5dec8aee0 *inst/doc/hisse-new-vignette.pdf
046cd633503d0553e9ce2dd8d1eceed8 *inst/doc/hisse-vignette.R
76f8e95fdc7e6108a88b6717b95bdd05 *inst/doc/hisse-vignette.Rmd
044313948557dc9ba712af4043aba87c *inst/doc/hisse-vignette.pdf
667f6f0be2899c051973ead336a69f36 *inst/extdata/conifers_reconlist.rda
58ee8ff9ad7837311f70282e020dcec8 *man/GeoHiSSE.Rd
16a71506708bdd2cbdcfd92cf729c79f *man/GeoHiSSE.old.Rd
fa3b09c860e3749edd21cc80bd8650c0 *man/GetAICWeights.Rd
a3936d4729623b86e7d24cdd42e5ac0e *man/MiSSE.Rd
a731acd4282b974eb803e29b17c256d6 *man/MiSSEGreedy.Rd
380a7f46abaaa82a9375beb8e142520b *man/MuHiSSE.Rd
015ddbb3134c3ac74aa1233aa5f22994 *man/SimulateGeoHiSSE.Rd
6d227fbb20ed60b04c9fc3f83466961d *man/TranslateParsMakerGeoHiSSE.Rd
7a27b0aa7aa356a4068e2cfa2bb25506 *man/generateMiSSEGreedyCombinations.Rd
08fd641425f3e093199f59c5e841d664 *man/hisse.Rd
87bdedaccaf1db9a7e97462aa864b4db *man/hisse.old.Rd
9c8f13c6fcc78039888b30651af45091 *man/hisseNull4.old.Rd
e2f1a88978e800fcb591ecffcd460375 *man/makeGeoHiSSELikelihood.Rd
356d300a4d7f6b3eb721c0823393a017 *man/makeHiSSELikelihood.Rd
8feaa4f22b31a3aaa53aa2ddaee82992 *man/marginRecon.old.Rd
8efba43e18ebbd18a9ae00976aa82eed *man/marginReconGeoSSE.Rd
9785d11b32dc7e5b4476e72eee37a746 *man/marginReconGeoSSE.old.Rd
70179b4efa915e77cbc578e376119ee1 *man/marginReconHiSSE.Rd
a6042937869c3a227fd160ca8a77a894 *man/marginReconMiSSE.Rd
7861563d42d9db2a1c761a5bab64c80e *man/marginReconMuHiSSE.Rd
c345be6cb0bd3dd7ba34d3720a35841a *man/modelAveRates.Rd
7c52a4a5eb1f065fd1f1a920c0cbd13b *man/plotGeoHiSSE.Rd
27f86143e7ea1b814177986f1cbd4db3 *man/plotHiSSE.Rd
5446b20614fbdada2f87d73017de7713 *man/plotMiSSE.Rd
3ec31a53aa31b85c294de4d60354cadb *man/plotMuHiSSE.Rd
5cf4176b447ccf23db9e00df63aacf7a *man/simToPhylo.Rd
e9bf0197060c6ade64e41b6bbefef702 *man/simulateHisse.Rd
4aecacd3ed8e24f467be0900742fd6b9 *man/supportRegion.old.Rd
2e6e20f9a370bfa8b14c13f3c5d1b855 *man/supportRegionGeoSSE.Rd
165c588b83f734acc5fd1396e74494fe *man/supportRegionGeoSSE.old.Rd
2680090d450726be166edf6fd8ab1aa5 *man/supportRegionHiSSE.Rd
b9ee14e18c928aa4af927bb466afd38f *man/supportRegionMiSSE.Rd
00f1be87863cf6983c5abd615145d4ca *man/supportRegionMuHiSSE.Rd
0d4aa6455916e3065413adf1de549b1b *man/transMat.Rd
1e0e049243b11cedce17ef3fc0c36f1e *man/transMatMakerGeoHiSSE.Rd
f787e966c3762057a7d685eca674e202 *man/transMatMakerHiSSE.Rd
60be66579556090a61d517327daadfd8 *man/transMatMakerMuHiSSE.Rd
a10296016f2685db54fb28ced404a642 *src/Makevars
ad5bb70b04de9bc6b1839a57968e9771 *src/bisse-ext-derivs.c
f7885bc944389187f9234b2d17c284f6 *src/canonical-musse-ext-derivs.c
9363e041611f14dd534369d377a41d59 *src/canonical_geosse-ext-derivs.c
295d82422f92407487b090f018bac987 *src/fbisse-ext-derivs.c
9952215020784b392f5035c3602bf86d *src/fcanonical_geosse-ext-derivs.c
911dcda1f2765b536dd5d662129e6fa9 *src/fgeohisse-ext-derivs.c
cc04cb662bd9e42216d0d12d19d5f386 *src/fhisse-ext-derivs.c
1c26b4d39466d84eec3d47c6987e9281 *src/fnotclasse-ext-derivs.c
199dc70a894b7dc0244da12b637cb994 *src/fnotclasse-more-ext-derivs.c
9cddd52690a27a5fc28a3f413abec7bb *src/geohisse-ext-derivs.c
67ca36f548bd236265dcf4a7fd2db323 *src/hisse-ext-derivs.c
504e6bc1337de6f84cb58d6f8a569100 *src/hissenull-ext-derivs.c
3b69d7879a290ac42eff72a2fd03e119 *src/misse-ext-derivs.c
f5e553a8d7ad098e1939f3915891714d *src/muhisse-ext-derivs.c
a4e47232a92c6533072e74d695698709 *src/notclasse-ext-derivs.c
d0a6a58cd725d3e7d266cce9e903da6a *src/notclasse-more-ext-derivs.c
91483b538717fd3f5c6b9caa3cdacda1 *src/registerDynamicSymbol.c
c63bfdef238700166a40686e07021eeb *tests/testthat.R
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d0e26c588cc3367cb83bc1662408ddd9 *tests/testthat/whales_Steemanetal2009.tre
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36e575b7a4e90d65dc8c66918610adf4 *vignettes/cladeSamplingVariables.Rsave
ac9f4b305af8a131663e8f19450d9140 *vignettes/geohisse_new_vignette.Rsave
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3c410bfae8bcdb399d7d620b900f04ef *vignettes/setCAQTipRatios.Rsave
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683c3791c94e5961175b960fcd87bf19 *vignettes/testrecon2.Rsave
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d0e26c588cc3367cb83bc1662408ddd9 *vignettes/whales_Steemanetal2009.tre
