24c76dfa07b77e328d5bb87faa18a292 *DESCRIPTION
df06ed7b61c5ae0468472fad8dcf7c8a *NAMESPACE
645c4ea7cd6472a8b1e3210a337ddaef *NEWS.md
f6c6a553cdfb905a4c7076b3b5c02a86 *R/ERMadjustment.R
ebca0d6e9ef09126bddb3a4b52fc3ad6 *R/PSSeg.R
55b0ffde02fde93df56880a410c20de3 *R/anotherBkp.R
e8c0f37e16feb761be48819cf87356c6 *R/binMissingValues.R
1a82b0d7aad1a0102654c1094dcedb24 *R/chooseK.R
03ff3055e22603afc4699204a7138522 *R/defaultWeights.R
21409321d34443dd80141194db2b88ee *R/doCBS.R
1e06d7ad3334e6d2ab4531d9a6a29ddc *R/doDynamicProgramming.R
a46d07c45a541930a68a8301083457e1 *R/doGFLars.R
84f6eec0e1d966402121d71c17a41afb *R/doPSCBS.R
0787255d8a22d5467153619731c78a29 *R/doPSCN.R
fb72ee6abce0bd7c29e367bd0aa54782 *R/doRBS.R
300854924e5634c66e47183e914b08fa *R/estimateSd.R
6b38c1608fe4ff018f6a3118341b862f *R/getCopyNumberDataByResampling.R
f09710efa4cb317e03546142ed2b8e92 *R/getTpFp.R
45e8a396e29ef41ace63fa2b10432df1 *R/getUnivJ.R
7832bb922eccfa239f7c4a29d1a84605 *R/getUnivStat.R
daf7f624bd454aa3f35fc14d0f689510 *R/jointSeg.R
77046789f5d7dbf90748e40523d9d4a1 *R/leftMultiplyByInvXAtXA.R
cb4d96e516ed68a27934ce23e1f8e2ec *R/leftMultiplyByXt.R
f2c658d25f66715e7743b1730df3cf20 *R/mapPositionsBack.R
b9149803e41673495d3fc9e5a79ca57b *R/modelSelection.R
6ed36c47247b4002347ccc707461aa6b *R/multiplyXtXBySparse.R
40de53b6243802d771e0ec561f60c716 *R/oneBkp.R
e2f2664282694b5ae419c3b8b51a6bbd *R/plotSeg.R
d13477af721dc4d410b90b6a707ad6f8 *R/prof.R
203f155551be4da4f8729089144d7d19 *R/pruneByDP.R
4c2b1ba1dde05f08c2828871a104809b *R/pruned_DP_C_access.R
b53721b8f3d8416c0a3c7d31ca9783e6 *R/randomProfile.R
5263c06b86db5d1baa168c04d413cbd2 *R/segmentByGFLars.R
b185817864064b6cd24b22949ae2504e *R/segmentByRBS.R
15e62e3d54bbf581c2206541f916bbbb *README.md
eb23eb6ce479bd9a5b4e038e906e15ac *build/vignette.rds
27245ae4f9efc48f98fb520cb0cb7999 *inst/CITATION
0d6a071139f0959764d83888a709015d *inst/doc/PSSeg.R
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bc274366df0db68a5d3a7476bddd2fc4 *inst/doc/dataGeneration.R
d35068dd0eac12030a858b60bcec7df9 *inst/doc/dataGeneration.Rmd
f27eeccfc2db7bf79b572b14df61a44f *inst/doc/dataGeneration.html
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33d3f122044f34134f4e42a85590b9db *inst/eval/GSE11976/01.createDataSets.R
ddbcea24ceb0a98cb7551fd9bf7e82b2 *inst/eval/GSE11976/02a.RBS+DP.R
cf6bd3e00445b5824e24342bcea7e40d *inst/eval/GSE11976/02c.cghseg.R
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bc237341fb1eaaccd4760a239e8a4625 *inst/eval/GSE11976/03.perf.R
861cc155c17add871b2238abeb018513 *inst/eval/GSE11976/04.pAUC.R
937ef4eeded0f01ed2a708f0ebd61ec6 *inst/eval/GSE11976/05.pAUCcurves.R
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b6dd68cae4936541810e0b9ccf13d7f9 *inst/eval/GSE11976/SnrForCaughtAndMissedBkp.R
61151018c12a8d686a05aa90a7c55583 *inst/eval/GSE11976/myImagePlot.R
9229147abda9e370fd4652ae303a06ac *inst/eval/GSE29172/00.setup.R
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7e8577834e4f6af6da3c391236b4eba2 *inst/eval/GSE29172/02d.CBS.R
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3a791f9ebd40c2f50b5aa419b6552033 *inst/eval/GSE29172/02f.GFLars.R
cd644ec2205637d7e0ab7f3ddd45ca41 *inst/eval/GSE29172/03.perf.R
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576e5c1062b0f72c0f63862d2d833144 *inst/syntheticProfiles/customRegionProba.R
141f73950466990ba59318c52d407f89 *inst/syntheticProfiles/firestorm.R
1d3eb0d57a4734817a83e642b567e6c7 *inst/syntheticProfiles/sawtooth.R
750d136d3be4c6edb19abe3bad594050 *inst/time/00.setup.R
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9cf527e7c9c9ea19533979d00fc88d4b *inst/time/R/02a.RBS+DP.R
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793f39d6a5c8b1690ddf032e7e8c8b1b *inst/time/R/Script.R
73938f374693f6bf5f5133a10f973c34 *man/Fpsn.Rd
31cb77ebf4f53f353475c7bc74b460f8 *man/PSSeg.Rd
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18e7fa414d376d821b687c6e4796dd8a *man/binMissingValues.Rd
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f4c20b560e4bf8023449374dec8e66ce *man/doCBS.Rd
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4de54d93e52984df608d9eb089461941 *man/doGFLars.Rd
56be09ae1339310277c704509907e1b3 *man/doPSCBS.Rd
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e984af4938232447694848d52e7c06fe *man/estimateSd.Rd
015b29b720f3b56daf5e6db4f5c2d812 *man/getCopyNumberDataByResampling.Rd
c4a8a61bc65208a54c218cdc1ec4b3ba *man/getTpFp.Rd
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47212695619a1f48701d1ae338fb894a *man/getUnivStat.Rd
2f2df1a1c253d7aee4d4d08a39c78844 *man/jointSeg.Rd
40804e2256c44d1fcf360c856e48bfb4 *man/leftMultiplyByInvXAtXA.Rd
067888cb3338285b6a7f17ec5955122d *man/leftMultiplyByXt.Rd
39a873973b117cf3d0db9c02c333d138 *man/mapPositionsBack.Rd
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e7a1c080c0d7bf7a86ef8fe01e7292df *man/multiplyXtXBySparse.Rd
00ae4a4629ecd5af6e609d11aa9c122b *man/oneBkp.Rd
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4a9bddea4cd5875fadd7826c5a4d95a5 *man/prof.Rd
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4ad2f6c6ffea5172da1596eb7a5f5f25 *man/retour_sn.Rd
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c9d8a104262261c6c8421b6c3d119f1c *man/segmentByRBS.Rd
ebf2ba13fa163955f4d40d502caa0457 *src/Heap.cpp
e82249b2fa9d65b23a5c9eaa9e63001e *src/Heap.h
79c022f996dbeef2a641da6283f788cf *src/Node.cpp
caf90fc5778a8978544cc30645a44857 *src/Node.h
0a1b01239340076433e875d8bb1e362b *src/Rwrappers.cc
b684e32fc33b71423978cd55708f9bb8 *src/colibri.cc
c6bfee33deaa7cacb5bc42ce4f5fde53 *src/colibri.h
009cef1093df2c7c958e15a18f636d3f *src/init.c
c3e06c1e3aaea05d6de5f814b8945659 *src/liste.cc
3e521b0bf8dded030915434a9c06cbad *src/liste.h
9800db202c92002b7c60e2d88263e961 *src/polynome2.h
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10284274d2505ac565ec6391d67c17c9 *tests/testthat/test_getCopyNumberDataByResampling.R
72216089947137fc6c5f90b08e3d07a4 *tests/testthat/test_jointSeg.R
170286795d5965286fca87614b6c0ae8 *tests/testthat/test_prunedDPA.R
358d27acb4b501c5bd1ef81123c4a99c *vignettes/PSSeg.Rmd
d35068dd0eac12030a858b60bcec7df9 *vignettes/dataGeneration.Rmd
fe34355e6c3c4378a712bc5f09691141 *vignettes/jointseg.bib
