8660f623c8cf7c6c7a9f35f5d13d4685 *DESCRIPTION
da74179d127339c5959f1c5b03ce2190 *NAMESPACE
eecc5b75864c2bc8366cd76dc4a2f041 *R/genetics.R
cbbd44b379abc8600a88732c864acd3e *R/hypothesis.R
3394c5190aad239f54736186f07a3d74 *R/maximize.R
f0e32254ef3ca8857d38df4f4244937b *R/objectives.R
1d06cdf0c983e6f8ee2813eb6a10ee92 *R/plotter.R
47473a9b77d7cb07276e58dec6d5067d *R/reports.R
3309d10573a1a2e545b1f256fae0496e *data/lgc-allele-freqs-wbp.txt.gz
8a20e5ce989bf355b198ed67bc681082 *demo/00Index
1edbf7f21959f3a4ef5f94bb5143b860 *demo/allele_report.R
8ebc593d7e1a87430ae2456590b6366c *demo/hammer.R
4971db4f001a9ac7d818382fcfaf5683 *demo/plotter.R
a13c7e1ac118eada7927474e7d0b8b95 *demo/timings.R
ed85b76aab7ddb1066891f13f78b86e9 *inst/CITATION
e9c376a81c4d48dc83ce851bf2fecc4f *inst/doc/likeLTDguide.pdf
2af5f86ca741114b8a85e9584a30f5cb *inst/doc/usage.R
3b30dc60b159cd03b838529b78b6243b *inst/doc/usage.Rnw
a3200e55a331fde1d91e073d7c23f423 *inst/doc/usage.pdf
53e8c9eecd4fe2bc721997985ebeba06 *inst/extdata/hammer/hammer-CSP.csv
4fa5f58b1d6bfb399fa0a8a1b506f7c9 *inst/extdata/hammer/hammer-reference.csv
01399a9798476da9145eeaff377432fc *inst/extdata/hammer/space-CSP.csv
ce0c3095dac70f0a9b7debf7153d5760 *inst/extdata/hammer/space-reference.csv
a7ec87544e242afc6683e2567dc01693 *inst/extdata/nodropin/hammer-CSP.csv
4fa5f58b1d6bfb399fa0a8a1b506f7c9 *inst/extdata/nodropin/hammer-reference.csv
f79a620a9f1b80337e7b710461ed4adb *inst/extdata/nodropout/CSP.csv
ea711863fc321dbb7c1f8f3b188a1957 *inst/extdata/nodropout/reference.csv
53e8c9eecd4fe2bc721997985ebeba06 *inst/extdata/novictim/hammer-CSP.csv
92a73daab81d735503f6ad134cc17956 *inst/extdata/novictim/hammer-reference.csv
e8bd17dae5988ad46c5c935be78ab462 *inst/unitTests/runit_genetics.R
fa107df40f21997b808a54405cb839b9 *inst/unitTests/runit_hypothesis.R
95cc3203dd9132ec02997c731797aabe *inst/unitTests/runit_maximize.R
63b1ddc51b598b99a597452a341edfc3 *inst/unitTests/runit_nodropin.R
cf1a3f15b7e4135d3e0eabf02466c379 *inst/unitTests/runit_nodropout.R
1482d63cef0ee986251e66900c3a8deb *inst/unitTests/runit_novictims.R
410c024c55728e8fb854cac3eea76423 *inst/unitTests/runit_objective.R
764290856e1f829da896ba427bd49873 *inst/unitTests/runit_objectivePerLocus.R
ef8f7e75e7bdbddf3b4bd58309c00e76 *inst/unitTests/runit_reports.R
7221dfe8f15280559856ed4139707a6b *man/DEoptimLoop.Rd
a9b0d49f4ed818479b9255ca523ca341 *man/allele.report.Rd
e479fb3cac14d19589071e849c5e5e1d *man/compatible.genotypes.Rd
847be351a728b8a30a00bb30ac0fab2b *man/create.likelihood.Rd
bdefc160fd04e843153f0e9e3c4cf0ee *man/create.likelihood.log.Rd
285ff4ab263ab8862fc1de2301d5aa3f *man/create.likelihood.vectors.Rd
9f64b75a5d95324e146949ebeeadbd9e *man/defence.hypothesis.Rd
1152484ae33c8b5fd032c18c053bb86f *man/determine.dropout.Rd
8f9a035a7cadb2d145fb98e18f969f06 *man/get.likely.genotypes.Rd
b60051fe0012614129a29d31c664fa84 *man/initial.arguments.Rd
2b973e72c898b32fe605343498b8f585 *man/lgc-allele-freqs-wbp.Rd
1be2eaaf82aa97d0a5105fae8a6b4d58 *man/likeLTD.Rd
559a6a146810eb867601a41461fe3c32 *man/load.allele.database.Rd
b067e2f5902c634d87a0197942d8f28d *man/locus.likes.Rd
d14af6b31e3e1fcd1f0a496da084d9d6 *man/objective.functions.Rd
24d4e580e08631bc7f3e57483b0d81a4 *man/optimisation.params.Rd
d17cf1cd471e3a5242c26ed05c6b7547 *man/output.report.Rd
07f726b02447bfc13e59a4e38a6ce965 *man/pack.admin.input.Rd
12516a5d9e038f569b9332ca515de1a4 *man/penalties.Rd
00a4b2688cbcacd075a91abdd5082c1d *man/plotLikelihood.2d.Rd
e50e89e11fbd0a105100c653af5cf555 *man/prosecution.hypothesis.Rd
980b5099b168ac12f9b62c293ab9b7f5 *man/read.csp.profile.Rd
48eaebbb437bbb3e2299c44cc164bfc2 *man/read.known.profiles.Rd
b95059f5a869a5a7aae92a9ed73c5b06 *man/read.unc.profile.Rd
5ceae392210e281ffa8b8561940bf841 *man/relistArguments.Rd
c49f0d1643eb0ceec2485709c6b3e9f6 *man/unitTests.likeLTD.Rd
d3c78a4af7ab4baa9929080d5fe6a069 *src/Makevars
d3c78a4af7ab4baa9929080d5fe6a069 *src/Makevars.win
8fb1f0d55ca4e388e9c8145f075d78ab *src/config.h
1ad1e6baeece0f25020fcc5b4965df42 *src/genetics.cpp
c3219013ea9b21cf21badf46e824077d *src/genetics.h
692824e4fad1b2246711672ae1503473 *src/module.cpp
b2c1dabfaa2aefe1a4683626d88c5e48 *src/objectives.cpp
e71321dc8875a4df9ab6daf115c1b73b *src/objectives.h
4f0417c26b80074d47af499f6fb69e17 *src/openmp.cpp
d2f09ce57bbfb480a1fe63383821c9a9 *src/openmp.h
3b30dc60b159cd03b838529b78b6243b *vignettes/usage.Rnw
