e5f915d0bd5636541f2450235e9b82c5 *DESCRIPTION
27ed5c95d9e12260898f6708ebf809db *NAMESPACE
66493e8d881939ea6f1cfd20d730b920 *R/genetics.R
200d946e682263a046f8b33198310cd1 *R/hypothesis.R
b02831e5f2e807755669e9c5a36dc4ce *R/maximize.R
2f228faf5e6b132b1c9505b08c97eb26 *R/objectives.R
af418eab0063ba3ba9ada2a8b8ddcdfc *R/plotter.R
a298736e1f6b8d7a739a41f198a788fe *R/reports.R
538e0b90054327659df1fe331ffe391e *data/DNA17-db.txt.gz
29dbc1faa26a2da5c948e34a682bb509 *data/Identifiler-db.txt.gz
d4ff7d15efffa27eef6bdd41e58360a2 *data/SGMplus-db.txt.gz
546b2be5cd1a1facbce8a5fef9a15244 *data/linkage.txt.gz
8a20e5ce989bf355b198ed67bc681082 *demo/00Index
1edbf7f21959f3a4ef5f94bb5143b860 *demo/allele_report.R
3627820ddb491c85023fc9e5a78a7b21 *demo/hammer.R
29ae485892606502f4b192c9a22addff *demo/plotter.R
f009ce7f7919f919b2633167d3be6509 *demo/timings.R
ed85b76aab7ddb1066891f13f78b86e9 *inst/CITATION
a607e5ee70f50bf578d641f6c3fed120 *inst/doc/likeLTDguide.pdf
c4baa7b6ee4bd43b70f43ba228146eb5 *inst/doc/usage.R
70be68675606099faae9fd0d484369d3 *inst/doc/usage.Rnw
b99fa2353cb741195648fc250fca8ef4 *inst/doc/usage.pdf
b2c3483a955137785d515e228d718c5e *inst/extdata/hammer/hammer-CSP.csv
ab15fe8e372733a647a4d69c7166c3c2 *inst/extdata/hammer/hammer-reference.csv
cea6b7597cb7d8598cb8c2e89d0063d4 *inst/extdata/hammer/space-CSP.csv
5281929d13f3305dad81dfc3c530d1f1 *inst/extdata/hammer/space-reference.csv
1144975c94a3b8e1416f2bd0bc8124bf *inst/extdata/nodropin/hammer-CSP.csv
ab15fe8e372733a647a4d69c7166c3c2 *inst/extdata/nodropin/hammer-reference.csv
9b023e554f62972b8ab2e4657ad64505 *inst/extdata/nodropout/CSP.csv
0f1714e63214d232256424d56c712929 *inst/extdata/nodropout/reference.csv
b2c3483a955137785d515e228d718c5e *inst/extdata/novictim/hammer-CSP.csv
6ec287fcf3fb2127a0dcc90e101ab39b *inst/extdata/novictim/hammer-reference.csv
f9a6c5e908e419e9f68ea348b06d306d *inst/unitTests/runit_genetics.R
bb3dd787625ff57ad30193398c15424c *inst/unitTests/runit_hypothesis.R
95cc3203dd9132ec02997c731797aabe *inst/unitTests/runit_maximize.R
80b573148e3bc00c3e92feb1a18353db *inst/unitTests/runit_nodropin.R
213adc9adfe296503e7bb23d05dfd624 *inst/unitTests/runit_nodropout.R
e3d85476c4ad5c17b1159af461b1fd0b *inst/unitTests/runit_novictims.R
d8c26eaeb3ddfd9a952b127d105f543a *inst/unitTests/runit_objective.R
e37badb2e2dd29e48ee3236ddd693496 *inst/unitTests/runit_objectivePerLocus.R
099fbdb7fc417362145d7981b045a5af *inst/unitTests/runit_reports.R
7221dfe8f15280559856ed4139707a6b *man/DEoptimLoop.Rd
ed51ad03fe790f94fdc8dd58d70c9819 *man/DNA17-db.Rd
53ea448f57f9808c2eca7322fb0692b8 *man/Identifiler-db.Rd
ee01778edfeb85dcce7c8f4f2209be57 *man/SGMplus-db.Rd
a9b0d49f4ed818479b9255ca523ca341 *man/allele.report.Rd
e479fb3cac14d19589071e849c5e5e1d *man/compatible.genotypes.Rd
847be351a728b8a30a00bb30ac0fab2b *man/create.likelihood.Rd
9a901e83d2205f779a6831d708a07a9f *man/create.likelihood.log.Rd
285ff4ab263ab8862fc1de2301d5aa3f *man/create.likelihood.vectors.Rd
ce5a6c2170fec686941b5c216c8b603e *man/defence.hypothesis.Rd
1152484ae33c8b5fd032c18c053bb86f *man/determine.dropout.Rd
dc2c663e434c93744117c178f5f3263d *man/evaluate.Rd
c9690778690e3dd93ce4e10f0dc4dce2 *man/evaluate.from.interim.Rd
67ff77b8cd1cfed5a1ca2bc3b99aaa01 *man/get.likely.genotypes.Rd
1984b5b8cc8ac8784149547d118e4ed4 *man/initial.arguments.Rd
1be2eaaf82aa97d0a5105fae8a6b4d58 *man/likeLTD.Rd
1a6bd3f60bd829ba3b397a87c75ae045 *man/linkage.Rd
0aa7b915f90757bc933f794ec4a6524f *man/load.allele.database.Rd
c3fae13b16d2c4042a9308c54ded473c *man/locus.likes.Rd
f27a158d6312e8c14a2a52f90a032cf7 *man/objective.functions.Rd
a19c33ea87154de0f812cfeb37e2c379 *man/optimisation.params.Rd
ffaad43f200ebb3c5bd599dd6fb5d694 *man/output.report.Rd
e207ffeb112c5e56f7643afbd6ea333b *man/pack.admin.input.Rd
f6a895570f74a0a92d6e3c8019c80436 *man/penalties.Rd
00a4b2688cbcacd075a91abdd5082c1d *man/plotLikelihood.2d.Rd
96260484b7cb41925156636de6214ee6 *man/prosecution.hypothesis.Rd
980b5099b168ac12f9b62c293ab9b7f5 *man/read.csp.profile.Rd
48eaebbb437bbb3e2299c44cc164bfc2 *man/read.known.profiles.Rd
b95059f5a869a5a7aae92a9ed73c5b06 *man/read.unc.profile.Rd
5ceae392210e281ffa8b8561940bf841 *man/relistArguments.Rd
c49f0d1643eb0ceec2485709c6b3e9f6 *man/unitTests.likeLTD.Rd
d3c78a4af7ab4baa9929080d5fe6a069 *src/Makevars
d3c78a4af7ab4baa9929080d5fe6a069 *src/Makevars.win
8fb1f0d55ca4e388e9c8145f075d78ab *src/config.h
1ad1e6baeece0f25020fcc5b4965df42 *src/genetics.cpp
c3219013ea9b21cf21badf46e824077d *src/genetics.h
692824e4fad1b2246711672ae1503473 *src/module.cpp
b2c1dabfaa2aefe1a4683626d88c5e48 *src/objectives.cpp
e71321dc8875a4df9ab6daf115c1b73b *src/objectives.h
4f0417c26b80074d47af499f6fb69e17 *src/openmp.cpp
d2f09ce57bbfb480a1fe63383821c9a9 *src/openmp.h
70be68675606099faae9fd0d484369d3 *vignettes/usage.Rnw
