BIC                     Bayesian Information Criterion
EMstepsGets             Perform EM iterations
EMupdateGets            Update an object in the EM algorithm
GLMM                    Fit Generalized Linear Mixed Models via PQL
Hsb82                   High School and Beyond - 1982
LMEgradient             The gradient in lme optimization
LMEoptimizeGets         Optimize linear mixed-effects
Names                   Extract or assign Names
VarCorr-class           Class "VarCorr"
VarCorr                 Extract variance and correlation components
coefGets                Assign parameters
corFactor               Extract the correlation factor
corMatrix               Generate the correlation matrix
corrmatrix-class        Class "corrmatrix"
family-class            Class "family"
fixed.effects           Extract Fixed Effects
formulas                Utilities for formulas
glmm-class              Class "glmm"
glmmStruct              Create a glmm object
groupedData-class       Class "groupedData"
guImmun                 Immunization in Guatemala
guPrenat                Prenatal care in Guatemala
intervals               Confidence Intervals on Coefficients
isInitialized           Check for initialization
lmList-class            Class "lmList"
lmList                  List of lm Objects with a Common Model
lme-class               Class "lme"
lme                     Fit linear mixed-effects models
lmeControl              Control values for lme
lmeLevel-class          Class "lmeLevel"
lmeLevel                Construct an lmeLevel object
logDet                  Logarithm of the determinant
logLik-methods          Methods for Function logLik
matrixGets              Assign the matrix
model.matrixGets        Assign the model.matrix
nfGroupedData-class     Class "nfGroupedData"
nffGroupedData-class    Class "nffGroupedData"
nfnGroupedData-class    Class "nfnGroupedData"
nlme-internal           Internal nlme functions
nlmeInternal-class      Some internal classes
nmGroupedData-class     Class "nmGroupedData"
pdBlocked-class         Class "pdBlocked", blocked pd matrices
pdCompSymm-class        Class "pdCompSymm"
pdDiag-class            Class "pdDiag"
pdFactor                Square-root factor
pdIdent-class           Class "pdIdent"
pdLogChol-class         Class "pdLogChol", positive-definite matrices
pdMat-class             Class pdMat, positive-definite matrices
pdMatrix                Return the positive-definite matrix
pdNatural-class         Class "pdNatural", positive-definite matrices
pdfactor-class          Factors of positive-definite matrices
pdgradNumeric           Evaluate the pdmatrix gradient numerically
pdgradient              Evaluated the pdmatrix gradient
pdmatrix-class          Positive-definite matrices
pooledSD                Extract pooled standard deviation
random.effects          Extract Random Effects
reStruct-class          Class "reStruct"
reStruct                Create an reStruct object
responseGets            Modify the response
s3bbx                   Covariates in the Rodriguez and Goldman
                        simulation
s3bby                   Responses simulated by Rodriguez and Goldman
solve-methods           Methods for Function solve
summary.reStruct-class
                        Class "summary.reStruct"
weightedGets            Modify the weights
