2e5b726f280690ac96aa8279ec72c848 *ChangeLog
994f9b0c0d45a504c27bb8252b25041a *DESCRIPTION
c75721978ea4c8363ac3575f9c73ab5b *LICENSE.note
b54b6b21f4181134caf346dda368c039 *NAMESPACE
5fe0f470bd4d5996c4f2e6bc46fb6aa6 *R/AllClass.R
c1eda7d4300d934fccc1271aba17f3a1 *R/AllGeneric.R
06258906fcb33c60df0495fc736fd54d *R/GHrule.R
ad16e47496961a2f1611c71c7b7d8d96 *R/allFit.R
dec2f9791153a8e7a56c33ee526ad02e *R/bootMer.R
62b0b1adba8ca456c428f850eafd0343 *R/checkConv.R
6cdc50a61ae595a0694fecbd5ac4c3d9 *R/deriv.R
977d9b9359bf2288205f43ce6ec2a4f8 *R/error_factory.R
16c4b372628dc2940562ce48cdf13e02 *R/hooks.R
29b6afe495b5ece2876fae4437028406 *R/lmList.R
a3a45a3fcc615cf70f9878b48f0a0eab *R/lmer.R
cc1cd19af8888f6c89f772b86419a788 *R/lmerControl.R
4bde5438bd9ddba5d3cd26e5a43a494b *R/mcmcsamp.R
552b034ea37bd4a89141ae77be462ab3 *R/methods.R
dd230699c62208e3ae2eda0107feffd8 *R/modular.R
fce30fededd71e3c542daf4f1a12f04c *R/nbinom.R
e81eeaea1aed45340dc7c174f1d70291 *R/optimizer.R
7227b116da4b7c9147642085eeb039de *R/plot.R
e50d00245d93ecce866eec293a11f69c *R/predict.R
20310ac1ff75c321a79e185c880a59fa *R/profile.R
b0c02d0440df7255bfebefc55ecf9881 *R/rePCA.R
301c7dc5694f9591adf7c237c0f1284e *R/simulate.formula.R
7b20c93bea72e7623e2899de44fb370b *R/sparsegrid.R
e057bf248efa620aa2c5c7ad122cd98d *R/sysdata.rda
a0be56b99fbcf7483c9a8d0475ae0654 *R/utilities.R
6eedd85037874069e2d5564c3cd19206 *R/vcconv.R
439bf689fa27cf9affd0335332142165 *build/partial.rdb
e635b33bbe34169fc3f6afffab936837 *build/vignette.rds
7b16a3ab29bb34e105b8edd5333ae95d *data/Arabidopsis.rda
8cf70603a6660d10c170d9e7159c2951 *data/Dyestuff.rda
2f1c751f7de40daa241601f64726c9e0 *data/Dyestuff2.rda
5d257c44f24c98310fbb2e9f85e3e396 *data/InstEval.rda
b61a31e7665881741ebd2f88acc98891 *data/Pastes.rda
bfd53f3fec03c93b634a4250d03c17a1 *data/Penicillin.rda
a545020034749ad9c56e4510fdba6dc1 *data/VerbAgg.rda
c80348b333f026d7fe927398894c6f34 *data/cake.rda
09bbd2170531a7256a2cf743f4bec399 *data/cbpp.rda
28d1ffd0a450108d274431f7335e859d *data/grouseticks.rda
3eb17ae1551f7a264c4214460041908c *data/sleepstudy.rda
8c81a4cdd4cd634e4102999545422b7e *inst/CITATION
ba73e21c303a1896f708235f8df609f8 *inst/NEWS.Rd
7ea2caa8013f7ffc6e4c333fa1db1534 *inst/doc/PLSvGLS.R
f84eeec527edf425f54bb4754e23da61 *inst/doc/PLSvGLS.Rnw
700a80e43856af8debd3f79641b0988e *inst/doc/PLSvGLS.pdf
8734899d5f18360ec1ea4ea4e5e3d59e *inst/doc/Theory.R
4f0f087495b31139690072d1aca33c00 *inst/doc/Theory.Rnw
4c8e8e66817e53296b60ae870eb99453 *inst/doc/Theory.pdf
87a9f507422583f5bf15d93d6661e629 *inst/doc/lmer.R
cc65fb9e5c6b9aab891eea75cd11a2ac *inst/doc/lmer.Rnw
e75d2a1dca4dbc2253e46b17dbc8950f *inst/doc/lmer.pdf
0da36551f5dbbe4f704ead467fc19dbf *inst/doc/lmerperf.R
ecde401260019bb51fa974bcda985f37 *inst/doc/lmerperf.Rmd
77bd6777592a60efeee3db3ef3fd6720 *inst/doc/lmerperf.html
b63ce45d087ac1ac15e011620990b796 *inst/testdata/Johnson.rda
0ad4852aad9639f10ad13606ecf09908 *inst/testdata/SO_sep25.RData
56173e2cb895c04358bf1bf81bab1495 *inst/testdata/Thailand.rda
aedcb80c37b6d01f4db5bd076ebc3298 *inst/testdata/badprof.rds
da186eafec8322a55ec78451e19fd01a *inst/testdata/boo01L.RData
b4b99dec3880c755f42a8dc9e77a067b *inst/testdata/colonizer_rand.rda
8a445ad28ddc63a87ff828ec55be99cb *inst/testdata/confint_ex.rda
5f381198d17abbc54763cb7afe2608f8 *inst/testdata/crabs_randdata00.Rda
693aae2f30886fa217ca1b82b0ed43bb *inst/testdata/crabs_randdata2.Rda
038cc2f0fce197eb134607eee63fe83c *inst/testdata/culcita_dat.RData
ec60161c46be3b6dbb2840490204eb79 *inst/testdata/dat20101314.csv
2c5596646060c432ca9e53cb5b61e307 *inst/testdata/dataEx_Glmer.txt
c340d92f256024616f2aaf56b3460c23 *inst/testdata/fakesim.RData
db58d90a120922be1d62a9252b8f1e2d *inst/testdata/gopherdat2.RData
8fb10b3889a527fbb661415f7cbb8e11 *inst/testdata/gotway_hessianfly.rda
d10397932e1069526d47be9e961e609c *inst/testdata/harmel_density.R
cb4e78532620e108c5c3af0c77fdb092 *inst/testdata/harmel_profile.rds
eeae66bdabc2c1af320e278718105a29 *inst/testdata/hotpower.csv
cf78ea240b9aa971169ec4e513b328f7 *inst/testdata/koller-data.R
4635d7c7d32300f4dcd9c5c810cde517 *inst/testdata/lme-tst-fits.R
8e789eec8fededa43e13ebeed8711c54 *inst/testdata/lme-tst-fits.rda
4e4f8105bf0b78e879e2f96fbf87323f *inst/testdata/lme-tst-funs.R
f01648354c4d6c08320a551d7bdd3c7a *inst/testdata/lmerperf.rda
3dffc4c30b964f86f938b6d8c656d13d *inst/testdata/mastitis.rda
3313df191ef524ea5b887dcb54b3f153 *inst/testdata/polytom2.RData
fd199a7fcece25952b873986d3ac0b1a *inst/testdata/polytom3.RData
10d8d2dab0664031ff18831a9213d1f3 *inst/testdata/polytomous_test.RData
36f44d658986561eee513a4a2789afe7 *inst/testdata/polytomous_vcov_ex.RData
c3a152c99372c2097426afb07adea841 *inst/testdata/prLogistic.RData
402feea181e789a9b24bd0df88b73717 *inst/testdata/radinger_dat.RData
0de901759722680f5c73ed77a6f6aae2 *inst/testdata/rankMatrix.rds
e7fc63ccb18cc703074586afaa6cb4a6 *inst/testdata/respiratory.RData
f3e1a564e23849bf8db38440b543c944 *inst/testdata/sbTobb.Rdata
3a50c8e1daec82e4208e7893cc963e18 *inst/testdata/strip_env.R
7c4e1116306646d99c9ef1a20c98afa7 *inst/testdata/survdat_reduced.Rda
dca0ccff30089606e068a486f5b51d67 *inst/testdata/tprfm1.RData
0eec27a5b9eab6d5b3d190cd37ec6634 *inst/testdata/trees513.R
145eb2c3cf4bac44b217618a0525e0e4 *inst/testdata/trees513.RData
eeb7607787b40c58c2db9685e5939eeb *inst/tinytest/test_lme4.R
9873b3dc101b4bf520d632f42bc04a80 *man/Arabidopsis.Rd
e763b611e70a7697cb6fe31b0561aaac *man/Dyestuff.Rd
e2529dc3f21a20ede6b95e15e1f0db92 *man/GHrule.Rd
63bcaefc2718a7d338bf093d44f6ac5b *man/GQdk.Rd
63677bddce89a841f9f69c5f467b1516 *man/InstEval.Rd
cf808076a7e869c084680fdcb2f44777 *man/NelderMead-class.Rd
ad16fef8b8dc2ac1d116bee141e48baa *man/Nelder_Mead.Rd
a6d10b8014d2887c25df3954aab76cb2 *man/Pastes.Rd
2dfbaad44da43caaf910a65a19ecb2f7 *man/Penicillin.Rd
e7f37aac25dad4d13a1bb2db42ff37fb *man/VarCorr.Rd
24d81c7969c0841df736f74ef399d40b *man/VerbAgg.Rd
8a175dcf7d874e33d6acf437e13e3e97 *man/allFit.Rd
bc0fe059b6462ce00d22e0cc92c2b874 *man/bootMer.Rd
748eafe3d76c725cbfb23e5bfe46afe4 *man/cake.Rd
fd93f2971f3ebf948961188570e94b82 *man/cbpp.Rd
e187936bd4ad87c41d8e7a51421f77d0 *man/checkConv.Rd
987e347b428a7ab7d01f6597682ae7c1 *man/confint.merMod.Rd
1dab3afe2e04f5b9b69519b6b5c0f5fd *man/convergence.Rd
3824501b16af01f2424271e95ba7c7ba *man/devcomp.Rd
22fc3d76c1055a4ca437278ac06b706a *man/devfun2.Rd
a934cdd2a196abbc1e9f332281077ede *man/drop1.merMod.Rd
0ffadf84fce25e56463e86ccf165e04b *man/dummy.Rd
c3409c0a52196a11daf3ecde616d3076 *man/expandDoubleVerts.Rd
20e78573b5222c04c999b4abd03f04a2 *man/factorize.Rd
f699fae826b328940860943c133ac02e *man/findbars.Rd
b6f832b80984b12fe181c79428184895 *man/fixef.Rd
2fa58c5a47024f77c29be94508844328 *man/fortify.Rd
4ae84a0ac87f3d359403ec1fb7698ee0 *man/getME.Rd
c0c66bc34fc7cd0b242d62901a9d4cb8 *man/glmFamily-class.Rd
b595fec321f7ca73ed88b843126baeef *man/glmFamily.Rd
7a77561f95c366c8e7baf40fb0fa6d5e *man/glmer.Rd
a2f6e4133eff7b2288bcc20c01ca3c29 *man/glmer.nb.Rd
36383a0393e3f8f285f7c1d3fe04160b *man/glmerLaplaceHandle.Rd
dc26eb9f86b5056b90e2e90d531490c1 *man/golden-class.Rd
f54fec64c989dd817c76d23f4e6b4a52 *man/grouseticks.Rd
c4236aab077a04046402a23b86635a7b *man/hatvalues.merMod.Rd
a68e2467e44316a346f4daf8bfba3e31 *man/influence.merMod.Rd
3af905a45dfae46c1eda3ac1be6dd36c *man/isNested.Rd
e10407c28ced55696cb726daac2d9c05 *man/isREML.Rd
e37d68fec1f6822ef5d4274309814074 *man/isSingular.Rd
5bb3bf291c363e7f818e48ce962027fa *man/lmList.Rd
e4faeace55fd64773ae425a8d0f72713 *man/lmList4-class.Rd
7d8ebc023d6f58fd43e3a35047240342 *man/lmResp-class.Rd
83c485d70631b2f161fbd85e32b47f0b *man/lmResp.Rd
5be68d6000e53966c5c7fbb470609929 *man/lme4-package.Rd
36b814d230675b6fedced4d5aeaa8840 *man/lme4_testlevel.Rd
be220de1fca5446cbdb36a122f44d7e8 *man/lmer.Rd
77788f83cfbfe20a25e67a7e7684f288 *man/lmerControl.Rd
a9f65c57ac36d09cc6112cf78b92cb76 *man/merMod-class.Rd
67daa8376c15b9f3eebf77f83cd5b6c7 *man/merPredD-class.Rd
2c4a82fb8f0e4d1d3a5f754c242ccee5 *man/merPredD.Rd
09352c1fb6121b13186be99c445751a0 *man/mkMerMod.Rd
ec1d3b36d1ae7b26ea8062b25097f9f7 *man/mkReTrms.Rd
0b8a7c8eb451e46d3c2f589fe257faab *man/mkRespMod.Rd
97cd5db2899f0c8587e1205df415cd21 *man/mkSimulationTemplate.Rd
c061c134315aa205c8f412e3114e6617 *man/mkVarCorr.Rd
6b8a3c579a205ea8a59e5f9c028cc5ad *man/modular.Rd
b6a57f539f0628c52c83ec28a3a1e1c2 *man/ngrps.Rd
b31bc40c7d30f7c7661f74f4ae6529b4 *man/nlformula.Rd
2e5457636b59075060d21b340a4e6a6b *man/nlmer.Rd
9d0550af0e7bca952d48bc8e25535e6e *man/nloptwrap.Rd
f6ab89312ba0f6e6312c4ad7a2a91eaf *man/nobars.Rd
6aa1db26560fca6afc99a6c988441f5b *man/plot.merMod.Rd
bf66eb13efc52a06cb2d0772db8adc4e *man/plots.thpr.Rd
64af082bc4529a6d9f595582cc5bc34d *man/predict.merMod.Rd
58e8674ba8e9804f48a2c6a539aa61ed *man/profile-methods.Rd
64d299749bf5c9a8ed4889a14edd0dad *man/pvalues.Rd
313495728caa821853f87fd372fe889d *man/ranef.Rd
89e234815a580d83ee134b502432b620 *man/rePCA.Rd
f1619455da67c1fe4ebb48da69d41663 *man/rePos-class.Rd
24efcd0c579045d6aa2b74818a3b3e62 *man/rePos.Rd
697f0b058c10a638815ceb30df916ace *man/refit.Rd
fc1dffbf663939a2c12d6a64ab2488a1 *man/refitML.Rd
3ff721cd182a7592f8b0d0488a4934e7 *man/residuals.merMod.Rd
a124183851ef5f2b787f310dcd53436e *man/sigma.Rd
ac312d5990e96c04a3bef4613ab693a6 *man/simulate.formula.Rd
2634e59be2d2b111be165c68847ebaf1 *man/simulate.merMod.Rd
beeed79153193c18bb44d318d3b41652 *man/sleepstudy.Rd
74597be45b8bc7612dfd345902340bfb *man/subbars.Rd
a6be665c1a6b719b2ef02a30d1d16068 *man/troubleshooting.Rd
c1561df41718c5e4f33413944777d45b *man/utilities.Rd
3565765b67b88fddd3df9f82fd82738e *man/vcconv.Rd
d36ee08626d65f230c54f0e26fe19284 *src/Makevars
9faf9df33ef6101441741d018009a391 *src/Makevars.win
2ad2fef6fff1b12bd60f5cb4c8646aaa *src/external.cpp
29f517a9f513c55cb34ede9d56604895 *src/glmFamily.cpp
fd71b2c3113a00e013aa1818b5e316a3 *src/glmFamily.h
e57214608a20e4666a497e1742512a64 *src/lme4CholmodDecomposition.h
8055feba7eb2e27d943378ebade0f146 *src/mcmcsamp.h
32c841db506eca816f556d7afa42dff6 *src/optimizer.cpp
e84ed1741b657d321391c2e98b24083b *src/optimizer.h
f24332705420bf6493e9b3cfc1356103 *src/predModule.cpp
ae498050cf4028c45e6f116c59dd27f0 *src/predModule.h
cdf2dbfbe86509142c71bc0f240da638 *src/respModule.cpp
9e54026971ddeae1ec36a759e38ec699 *src/respModule.h
8bbacc62f05c91663ae579ddf04f7a35 *tests/AAAtest-all.R
aba02abfff3ea0dc059205fddb672c7b *tests/HSAURtrees.R
a810120b26ea54a7c44ec24aa9f441f5 *tests/README
1d6971e7df776d4ffffa929560abf419 *tests/REMLdev.R
1d7c93d885154b156d3a387f1735e080 *tests/ST.R
4d36e8f04cc6dc309d6fe69f715271a0 *tests/agridat_gotway.R
82889c8158caa7257cae9143f34d407f *tests/bootMer.R
976dae1d199acbb54363e8cf0a65ccef *tests/boundary.R
626d5d20f79dec04b1fda4c08d4de4ba *tests/confint.R
e0947bd9ce40080d115a7f35304d623a *tests/devCritFun.R
302e1dfe81a85ea1084386aab8432dbd *tests/drop.R
8759baa83d8c14161a8eff1bda166bc4 *tests/drop1contrasts.R
6d3709bac2db9daf69e1e29aa3d2d273 *tests/dynload.R
bae09675aa2568fe2505d8b62d1264b7 *tests/elston.R
4a15fbb6260ecf8c0db04bdcb37729c8 *tests/evalCall.R
65c300f2156a21d8492b0a050800057f *tests/extras.R
46e18635f440a030fe3e0e57c902ad81 *tests/falsezero_dorie.R
5e49f8a8d4b7275dfa584ab6b5e1c08c *tests/fewlevels.R
22abbcf0bf53d87a69fb887b6dc29ee6 *tests/getME.R
9c3ef64e8a2b73869d9132eaa1d73e57 *tests/glmer-1.R
87fbf8bcb9704fe0d95928f441e2c85d *tests/glmerControlPass.R
0701d985743b1de9021dada3624f4083 *tests/glmerWarn.R
601cd96a83064ab0ebbdb699e8cf2859 *tests/glmmExt.R
1c3dbc408c2995ffd9263f68fc40f944 *tests/glmmWeights.R
e758ba5bf45b9d4d701055a96d540e56 *tests/hatvalues.R
3693e1cc55ebb3bcf5aaf46ee0bf1eb1 *tests/is.R
fd186269bb93bbac5dd07ec81ea3ec2f *tests/lmList-tst.R
82bd64df0f7f9107b43ab455f143ff1c *tests/lme4_nlme.R
ec7b45298be059e0d8d1b5854c841ebe *tests/lmer-0.R
deb3ea8a35d4a647eae7d7579acef6f3 *tests/lmer-1.R
df7155d2067fbd1459a33431a6b89b09 *tests/lmer-1.Rout.save
d01e36cf014c17a45a448da442fec402 *tests/lmer-conv.R
3626933bc63874cc482b23542cfb1325 *tests/lmer2_ex.R
b14e84bbdf9344cb4514151d99d513d4 *tests/methods.R
ef374523e11228e4f2df65883ac1ba42 *tests/minval.R
dc038e000b1d664c0c3fc1afa713dd73 *tests/modFormula.R
28829ec0b0f7434390fd2801805e095c *tests/nbinom.R
c44581c823bf500428f485bb6d02ea84 *tests/nlmer-conv.R
4182acd6af58c584c25d745f98d3491f *tests/nlmer.R
e79341288e4dbbba2380bd36b5b63473 *tests/nlmer.Rout.save
b7265658c2f03aef75e1ae2fe1617fd2 *tests/offset.R
f3f4fe4f43b835de94f56df46940c87e *tests/optimizer.R
243906ce404ce78f0e54487f9f128419 *tests/polytomous.R
d43a3e94c09040bc3ea42155f9ac3e11 *tests/prLogistic.R
19e545e54e714fcfacdf54b379856d6d *tests/predict_basis.R
92c0965fdb5d59d8308c686f583eeadf *tests/predsim.R
962e548f367fac7d7ac6f6a74fd0aac8 *tests/priorWeights.R
f66f45c2d7efe66c1a899ac004c6cc7c *tests/priorWeightsModComp.R
851ab07ade90afa06519d5b6524f9c2c *tests/profile-tst.R
b2a49dcf6fde0fd4c2f163604fbfa613 *tests/refit.R
f41d72b2048efd5d4aee555f78e1292f *tests/resids.R
59b7d77420eed731836649460fabdd3e *tests/respiratory.R
74532b4a6e422f2a558cb6d131030416 *tests/simulate.R
14328f790312794d092fe203766763dc *tests/test-glmernbref.R
8375fd1d85d82c024a5a2bbab8b01a14 *tests/testOptControl.R
8c2cb194b2102d830e8ec03a7d90e05c *tests/testcolonizer.R
a9b61b064c85d067e523cdd9923f8c76 *tests/testcrab.R
0f215bf9be77528cf28d284888393ab8 *tests/testthat/test-NAhandling.R
5327e2d4780b0630089bcbb9de4715d8 *tests/testthat/test-allFit.R
60481bb722fbe5d948cd37ebdc42744c *tests/testthat/test-catch.R
5a7f64ae7704ac4828a9766568b96021 *tests/testthat/test-doubleVertNotation.R
cc7a2bffc0e7ca1d8cd60a1d974e5f7b *tests/testthat/test-eval.R
122e5c6684959d3304f3da4e441de029 *tests/testthat/test-factors.R
ae1a6c68a4c16818c81f0556084f80ef *tests/testthat/test-formulaEval.R
4fc4d941f9e8e52fcd53e30e687a9382 *tests/testthat/test-glmFamily.R
c956ef97e5e8a028ca37723ee53813bd *tests/testthat/test-glmer.R
624f216b5476bddab915163bd1644f75 *tests/testthat/test-glmernb.R
313c5608464d5c195880cdac8d76950e *tests/testthat/test-glmernbref.R
dd37600edaa287fab433dad3621d8980 *tests/testthat/test-glmmFail.R
b56599eb941945b0bff60be870cc0df6 *tests/testthat/test-lmList.R
e665cd8ab716544784e4d7ad946db822 *tests/testthat/test-lmer.R
1ef8bc825d617df86ba8128cef02eff4 *tests/testthat/test-lmerResp.R
0174f2baf2d46f674fbfb632a92c714f *tests/testthat/test-methods.R
7d3cc50d5f8999d96bb6ae0338f0bb1c *tests/testthat/test-nbinom.R
45ef0bfa99cdf9d184bf91a67f945c97 *tests/testthat/test-nlmer.R
c5a2a10463306115ca7aa399dbcc0fb6 *tests/testthat/test-oldRZXfailure.R
c8c03a6d6e61c19e2f3985673032a003 *tests/testthat/test-predict.R
3e2b37cdca465ac1121000fa1b73fda7 *tests/testthat/test-ranef.R
47463f8098d8db9155e9d8d98aa3f330 *tests/testthat/test-rank.R
32cc5a87610206067aecf0c6282d7865 *tests/testthat/test-resids.R
a8b5c24a565b3e0f8afb5f7aa64234e6 *tests/testthat/test-simulate_formula.R
ba9fe366c384e8f5e08c47e02350ef14 *tests/testthat/test-start.R
6334ae273f2b1c89d9d629c6a1050464 *tests/testthat/test-stepHalving.R
0371f5a0714714dfc3288543fe819136 *tests/testthat/test-summary.R
5a0402a0706e02a3078caa49e1e60233 *tests/testthat/test-utils.R
ce72dd3a6585a6d08e5af85b3ca8c1da *tests/throw.R
b8d09265b05a579ab6b218887b59b70b *tests/varcorr.R
888b6d0b47901ba9a40003d6868a65aa *tests/vcov-etc.R
f84eeec527edf425f54bb4754e23da61 *vignettes/PLSvGLS.Rnw
4f0f087495b31139690072d1aca33c00 *vignettes/Theory.Rnw
9c40378d0fbc0a8a8709908391461f5b *vignettes/lme4.bib
cc65fb9e5c6b9aab891eea75cd11a2ac *vignettes/lmer.Rnw
b0e17938f9d8feac0ec8df7ba1c4aba3 *vignettes/lmer.bib
ecde401260019bb51fa974bcda985f37 *vignettes/lmerperf.Rmd
