f75bb0828090618d1d36fb4a49e17eb7 *DESCRIPTION
a155e5cf6c725ee362feca2d77c8d5f0 *NAMESPACE
26be8788415b7443c0bd9e58fb58d94a *NEWS
3f352e2945c6497b04bdd2d0e4ac0616 *R/AIC_momentuHMM.R
d34c1a96aedad92429975104a90087ab *R/AICweights.R
7d94dfa7e1373edb5e74bd3eeaf2b1b0 *R/CIbeta.R
76cc85143872c5a3fbb4d8eadad22896 *R/CIreal.R
28f72204d67b88ca92e33d8342ffba78 *R/HMMfits.R
b6084348aa9a256d9b54b6673b0679df *R/MIfitHMM.R
fe16505a80d13311642035ff2d1765df *R/MIpool.R
32aeb886bbbdec4ee7a7d4d6f2d18a51 *R/RcppExports.R
7f0f3844c7ee9e46c61ef6730c18501e *R/allProbs.R
48f1b5d6b626ac674703cf0203ea00f3 *R/checkInputs.R
bd6717c4b9a342fbb81188bbc75e51f7 *R/checkPar0.R
dd5e116be9ff408185baa2a72328a9d1 *R/circAngles.R
bb63f480d9124486389a038424b4ae6f *R/crawlMerge.R
2340a26d33b0e37fd5c11b278c169a5e *R/crawlWrap.R
d0fde0601947308d2705960803cf54dc *R/crwData.R
5a698331ceadd4faea578b08824eea12 *R/crwSim.R
d9eb79ac72a971db83307fdce825fb16 *R/distAngle.R
2da4b0220cc64e506454e7bf36a60e25 *R/exGen.R
a5edc08591c81d2cc6c97e8ab8a5d974 *R/fitHMM.R
32067f4bd4a413c4a085b47e1b50cd60 *R/getCovNames.R
a29f30c688782ffe9847554970b9e5b3 *R/getDM.R
ff7fd0f6ceaed914a633df96d1bf3932 *R/getPar.R
8fea282ca32a915067a16849bd306cc0 *R/getPar0.R
1c3f1e699e0d57a9276a7b67dcbf59f7 *R/getParDM.R
de992e9e89b47b4732de3987e1a8e0d5 *R/getSplineDM.R
6650dbe5c769de4d8b0b7ecab0eb6c26 *R/getWorkBounds.R
6bfe04d2847f116cc887e60051ab8239 *R/getXB.R
b9595c56e354e9df76217f189883fcdc *R/getboundInd.R
faa05ff80e026973b73a59461a981f15 *R/is_formula.R
09dd63c8c2360011ab5aec0be92ca240 *R/logAlpha.R
a4f4fbe395e6f726acbea5fa17eef6b3 *R/logBeta.R
eebe8b3ae6edb392fc61233e8394e28f *R/miHMM.R
d03ccb3273bf3df83944bc079707858b *R/miSum.R
fe7b12c3d9eb0600e85f8e7f6f294fc4 *R/momentuHMM.R
775930039920b42f9c5f31b5f58c4292 *R/momentuHMMData.R
15a4d872f8419457111d361422cb39f8 *R/momentuHMM_utils.R
67765aec21fa1da2ae859ce694baa076 *R/moveData.R
e9fa9e3e023050b24c6db06a79b06cc2 *R/moveHMMwrap.R
83a04b6c6058b97486ece7e0aa963b93 *R/n2w.R
c5fc14403cb327b550f9a6887a9c60a2 *R/nLogLike.R
3c4ed0a993cc8c7ba0ad699e577b4476 *R/parDef.R
409ef2b1379e2b65dff8df11b839118f *R/plotPR.R
ded6dab52032e4996de01c362b779655 *R/plotSat.R
c32357e0006de56eb6d0f86afddaea57 *R/plotSpatialCov.R
577664acb01c15b4a8fde103bc71834d *R/plotStates.R
496ef507fdba24960afd56de400a61ef *R/plotStationary.R
9e79995aa87cf4a00e5457d35a814acf *R/plot_crwData.R
031c6c4e0d481eaa9bebb30bc664f2e9 *R/plot_miHMM.R
9afb9e3bd9065a41b52e76ab8bb61216 *R/plot_miSum.R
00810213deac33a07e3edd4c7fa04f47 *R/plot_momentuHMM.R
4ad82a32dd035ee773561ff27a79181c *R/plot_momentuHMMData.R
59750a5f6ec0b82c908bd506cc67d4f1 *R/prepData.R
3aa2d9bd09505369e068a866f7445d66 *R/print_miHMM.R
b75f7e95151c107772f817e0aca1227d *R/print_miSum.R
1fa8cfb8b4956d1de47bef9b02479f87 *R/print_momentuHMM.R
7526c88601c2a252ade7f4d383187230 *R/pseudoRes.R
7e4afbebe3ef42a5a8d5eefd32387467 *R/rwrpcauchy.R
a113d790afcdc2d778f4cd30084d3f9c *R/setModelName.R
d5982417ecb281b70594db1510948ae9 *R/setStateNames.R
30badb932538a366c2dcc5419258f10a *R/simData.R
ac9b90b042cf734fb46318697349aad6 *R/simObsData.R
4cab4f8d4ed4d10eb8d7beba9ccc0008 *R/stateFormulas.R
3c4b633b41da3c1dbfcb3f24d4f7632a *R/stateProbs.R
17d364d468c922bbbcc9cef768dbd8f6 *R/stationary.R
547c1cf18efd4c4ed9d0e99b223be602 *R/summary_momentuHMMData.R
870a7e31f4529281ca719ff3beb06655 *R/timeInStates.R
5bbb9b34d8f01ea8ff3bd9ef965243bf *R/turnAngle.R
dcf08f7a1d8f4c70435fe4bc7ffeec23 *R/viterbi.R
f6e160b41aa1cce325e9724279171be5 *R/w2n.R
15587a137a476254fa321d6aa45bfe09 *README.md
24994d4943a5ee8958cc5fac9149b479 *build/vignette.rds
1833c5d462481eff451d8a430c205601 *data/example.RData
cc2ab733f72968df6da42bea70151e14 *inst/CITATION
728883ae09565ce0ff5921eb28403cd6 *inst/doc/momentuHMM.R
0104dfdf8f0ad4e9184a4ffea81c83fa *inst/doc/momentuHMM.Rnw
e4ad2f02d330d02b869d565884f223b9 *inst/doc/momentuHMM.pdf
5dc340010b61b8966f8dc4e3811d36c0 *man/AIC.momentuHMM.Rd
7273db5dc433d9cfee8167c99be5977a *man/AICweights.Rd
44bf8518451bd535f71b885ed70d351c *man/CIbeta.Rd
25db62a4edc225226ac675f3352c3c1c *man/CIreal.Rd
d291cd606b79396b656a662585580092 *man/HMMfits.Rd
90272fd538e94a57da7145732ee5b029 *man/MIfitHMM.Rd
5a92e85b60326a0b7cdfc6f4b99cf7e3 *man/MIpool.Rd
37a2e569893f37c97bdf138877627c3a *man/XBloop_rcpp.Rd
c4a25ec0f6cc930cd27a4c813523d25f *man/allProbs.Rd
bf479d5b177bd6d85f27b1a5eee74ed2 *man/checkPar0.Rd
6e32f6d5350e2b0ceab9d6de60c806a8 *man/circAngles.Rd
55d733fe90e65f735e436d625602786b *man/crawlMerge.Rd
fbcd3a90676126b344e5048323fdd06b *man/crawlWrap.Rd
d88134344d8e5940f1bda0ddf76503a0 *man/crwData.Rd
7c4f0364b276f37ca5469c7c6c7e5a12 *man/crwSim.Rd
e535053ebd10b6688fc9b43db4fd03f6 *man/dbern_rcpp.Rd
5441f92d4a0edf89fe246e611ae20d2a *man/dbeta_rcpp.Rd
953a2c8322835daf83aa938ce45b9aca *man/dexp_rcpp.Rd
71b84c528e1770689c60b5ea9aec947b *man/dgamma_rcpp.Rd
fe00316f145c1c371ae337861623e7b1 *man/distAngle.Rd
d941188f0a5fa30c719a5ae93fa1318f *man/dlnorm_rcpp.Rd
aa18dff0eb871621b5f2febdf59dd27b *man/dnorm_rcpp.Rd
faddd36043704acbae96a6ab880addb9 *man/dpois_rcpp.Rd
c331d29d31c63bd1362d0a6e347848f5 *man/dvm_rcpp.Rd
c8420c448a9d8ad8c2fe5f5ea309de93 *man/dweibull_rcpp.Rd
66551b21df0122b11cbe482c094c8b62 *man/dwrpcauchy_rcpp.Rd
8137c61502545942db3d17b77c0e5471 *man/exGen.Rd
5bd894bc3bee5ac2c6590ff54bdb10b5 *man/example.Rd
b0df67447e8b97acefc176ad7434e1f4 *man/fitHMM.Rd
df7ef0066b8a197871aa692b10487159 *man/getCovNames.Rd
cacdfb8ec83709a43c0fcfe1df8288ab *man/getDM_rcpp.Rd
5dd6595b2b47705da596e850cc4ec01e *man/getPar.Rd
349e8f44ddd39ac19b1d0dee2fda5f62 *man/getPar0.Rd
24261a7a48095bb303c7899db5572d17 *man/getParDM.Rd
6375fc4db9a7c07d05fa4f7613dca4de *man/is.HMMfits.Rd
769f8269e0796d1b55b410a736004467 *man/is.crwData.Rd
295ab23d1cf4ec04454bb7ed4c956754 *man/is.crwSim.Rd
cfd70d5888ef05ce290bceb03d78b745 *man/is.miHMM.Rd
f16b45b1684dae4f2583f222a4bd1580 *man/is.miSum.Rd
f1c5651d7cbc38ad74adea650fd4d50d *man/is.momentuHMM.Rd
4425b3ad0d541ac7b994646b80866c7f *man/is.momentuHMMData.Rd
b3e8746b1f6b3edfff3428b882641d4b *man/logAlpha.Rd
a9a3abc6c5315c8882c9678c98649bcf *man/logBeta.Rd
1b6981f572cf4e63b831c487dd960d79 *man/miHMM.Rd
6b453dc727b22323858a9a5c3c8e6cf3 *man/miSum.Rd
1140382a7e65bfd111d9a1d213fff0cd *man/momentuHMM.Rd
5bc98273d05ea49b6e4ccd09e89a0e51 *man/momentuHMMData.Rd
37c5d6c23cb3562d513ead1bba664441 *man/n2w.Rd
d482869065bc8b47aa8db16c590037b4 *man/nLogLike.Rd
e8a5e7f09ce3c70f6c4ea52aa773b74f *man/nLogLike_rcpp.Rd
126c8548b90b454bcb050b50fc335e12 *man/parDef.Rd
51691957de7d0c8b525568403135f979 *man/plot.crwData.Rd
7c49bb522b41aa738a4f10158bcc18a5 *man/plot.miHMM.Rd
e9c5d60c3c6c0971544b6d38505d66f8 *man/plot.miSum.Rd
3d55018d09cdf0a687eb0f3c450293b7 *man/plot.momentuHMM.Rd
d9303b7274312478d2fe93ec60185854 *man/plot.momentuHMMData.Rd
22f401f4890c5443fd575bc0ba7cfb08 *man/plotPR.Rd
6563111fcb9360da7f30609399c958eb *man/plotSat.Rd
86432f66ca4363b6d8c45f712d17d220 *man/plotSpatialCov.Rd
007e686c7dc7a963691bc3cf7c341cab *man/plotStates.Rd
d15c02ec1cf83e1fc3ec7ded5d81badf *man/plotStationary.Rd
5962aa3af24cdd522c02d2b362a966a8 *man/prepData.Rd
fb84b95621223a77a51e44ec562932da *man/print.miHMM.Rd
b9615420448d51dd2cb6a5c117538285 *man/print.miSum.Rd
06053f19ceb3740e1e6ea33fa3547b11 *man/print.momentuHMM.Rd
5046639ffcb90c15419225e0b51e3766 *man/pseudoRes.Rd
9eb60ec8b638fd09af4d68860380aecd *man/setModelName.Rd
58d422e2022e310b3371a8fa258798dd *man/setStateNames.Rd
0c5d25deebd62321157d8a0391c6b8ae *man/simData.Rd
0ecb974bbdf45af1a5256196f3f8a4d3 *man/simObsData.Rd
56d9a086eadf79413005afe74aec5c1e *man/stateProbs.Rd
8ec52b3077df97da3cceef4bad82bb1b *man/stationary.Rd
cc4d4a15f8370f05e3d9d1b10a816f73 *man/summary.momentuHMMData.Rd
eb83f0266e6ff5c74eb0a1bc0a42964c *man/timeInStates.Rd
6b6a0500f38ed33fd249bbdc2c135bf4 *man/trMatrix_rcpp.Rd
d020111feff192e6ea8f281e1836c62a *man/turnAngle.Rd
c65c34bdfbf1d35591a5d8c8017c2363 *man/viterbi.Rd
4ee0dd084feedd3bd6533dc7485913dc *man/w2n.Rd
8e6e6637c2eecd8e072911d063d4e108 *src/Makevars
fecc546eb34c31c10bd5d821161c2666 *src/RcppExports.cpp
2368756b524263645d3e24d9ece7c62c *src/XBloop.cpp
56fbf243d8c64e2059b96d98afb8a71b *src/densities.h
07f72ae58e5fd258cd9a3d78678ccb11 *src/getDM.cpp
9658d28c6aa6d11b572247d96fdde482 *src/momentuHMM_init.c
cb1cad98afdb74d7b92fd190a1ae503f *src/nLogLike.cpp
5b3bffa99931f764a59a5e5af835f56d *src/trMatrix.cpp
1fff7b3de6ed1117db2b60f2b61c4f07 *vignettes/adjcalc.sty
2911d87fdbecd53be77c1a1cb2df74ab *vignettes/adjustbox.sty
9f99710ac922e0122ec0622cd7fa6f8a *vignettes/elephantExample.R
b0a4c731f9b231dd07ef96cee2696b73 *vignettes/elephant_plotSat.png
2e5af37bc70dbfd442da58ec00ec208d *vignettes/greySealExample_TPM.R
017af4f52faf04d0bff954ea1ab56ad7 *vignettes/groupExample.R
d1116b9f31f79c6e5b1d33ea68a7d332 *vignettes/harbourSealExample.R
bd30865cdbf546537cf975c9a963793b *vignettes/master.bib
c47cc4ec529ccca0d7c5b726584b784d *vignettes/mee.bst
0107f1d9a64ecbfa75c87f6e41d98be2 *vignettes/momentuHMM-concordance.tex
0104dfdf8f0ad4e9184a4ffea81c83fa *vignettes/momentuHMM.Rnw
fecc2a6fb063a8017cb14947380bab94 *vignettes/nfsExample.R
b8bf9018d0fde21c888e03500873201a *vignettes/northernFulmarExample.R
598a142df2087f8ab67274b94710bef6 *vignettes/plot_elephantResults001.pdf
a8c3c30ee27499acfbe5255a38485b56 *vignettes/plot_elephantResults002.pdf
c08043fca53408f3cfa7208c6a291455 *vignettes/plot_elephantResults009.pdf
57e8b9d16226b482ada49a6592171468 *vignettes/plot_elephantResults010.pdf
0f387288d2e5801abb21c793fab5d2fc *vignettes/plot_elephantResults012.pdf
4a63a3f3df68e5b2adc5003aef387dd5 *vignettes/plot_elephantResults013.pdf
acb90b6770cec0e460ded17b6271f51b *vignettes/plot_elephantResults015.pdf
25f4f7efb9bbca310d355b28f8639894 *vignettes/plot_elephantResults016.pdf
a077588eab39770f3120de34b2766503 *vignettes/plot_elephantResults017.pdf
cd786de342f9bc6da2b52f55d6ce8b14 *vignettes/plot_greySealResults002.pdf
d623efac552fa7b0f15cb23f3f508da9 *vignettes/plot_greySealResults006.pdf
42a591352e7f8705721947accb20984a *vignettes/plot_greySealResults009.pdf
13c6bb42a8caa9d7b1d75757229dfed4 *vignettes/plot_greySealResults013.pdf
f54f8cbebe129792c4348b62fb0ad54a *vignettes/plot_greySealResults1.png
79baaebf7e9b68c124a1cfd004c449dc *vignettes/plot_greySealResults2.png
958d7212b63fbe4a9ee2d6f673eb8544 *vignettes/plot_groupExample001.pdf
0551336b22bb4dcdaa3247ab1656a169 *vignettes/plot_groupExampleCentroid001.pdf
dc4ded22e02b69ffa4a8eeb6a3a948e9 *vignettes/plot_groupExampleResults007.pdf
6f976dd7a57526c7955ea2c6eb1463d4 *vignettes/plot_groupExampleResults008.pdf
fc9a4d83946de8ae9c080257774c8bd6 *vignettes/plot_harbourSeal.png
7abf566e9d6bd41b861ec6f83ccb6266 *vignettes/plot_harbourSealResults020.pdf
84b9f9bdb5a08691308b7c7fee17f171 *vignettes/plot_nfsResults.pdf
e0e7846fd90c1b1434f34e582bf6e595 *vignettes/plot_northernFulmarExample.png
a37d55c22d28a88a4b1de516d766f130 *vignettes/plot_sesResults001.pdf
28d86030fd1fa2f5a4e70012c74cbafd *vignettes/plot_sesResults003.pdf
57be94b834d39c0ac860318c049ef4fd *vignettes/plot_sesResults007.pdf
66d64c5f1dcf710ee92f48d7a39d55da *vignettes/plot_sesResults009.pdf
7b5cf5c079524d985ccd6f458b542183 *vignettes/plot_sesResults2.png
71dd2711bf21b67f713b7653d652fa1d *vignettes/plot_turtleResults001.pdf
c069b67c6d9bacf34fedc0e717d361e1 *vignettes/plot_turtleResults002.pdf
20fe0744dd44a457a8c86526b3a33113 *vignettes/plot_turtleResults004.pdf
5dde13e5cc466c9655f8ce3427cebc48 *vignettes/plot_turtleResults2.pdf
4588147cd115c29a6abe850d7dad0d0d *vignettes/sesExample.R
5b0894c5ca9a10782d3118440a31a8bd *vignettes/trimclip.sty
405ae0cd50c9318648e30397de617765 *vignettes/turtleExample.R
5ec16f94678301184bf4417ccdf43e38 *vignettes/vignette_examples.R
fe67ee91ff2b11b59573aab1a389dfe7 *vignettes/vignette_inputs.RData
