41b97f548ad6b518ff99e85f87477086 *DESCRIPTION
be62c1c618cc6d37116f3a1d988b5a6e *NAMESPACE
ba93a5339c8b373df7428a98d1bc0be9 *NEWS
2334588f4069c927618353cac8c409bb *R/AIC_momentuHMM.R
d34c1a96aedad92429975104a90087ab *R/AICweights.R
edcbc45f3732f6db8b8bb8dd81ffe9e4 *R/CIbeta.R
24a6bc21a3c0eb39f5943ba0d12826d2 *R/CIreal.R
28f72204d67b88ca92e33d8342ffba78 *R/HMMfits.R
4a1a5bbcc94292ee39ff0bc0d9e3ac39 *R/MIfitHMM.R
cc5ece92a6be640baea2e077cc5c7364 *R/MIpool.R
c29c03ca306bd6b1ddf43f30157f68d0 *R/RcppExports.R
7f0f3844c7ee9e46c61ef6730c18501e *R/allProbs.R
48f1b5d6b626ac674703cf0203ea00f3 *R/checkInputs.R
df1cf66012dc2794081116aee9137e92 *R/checkPar0.R
dd5e116be9ff408185baa2a72328a9d1 *R/circAngles.R
5495c2793be4c3692907e3d514b60bdc *R/crawlMerge.R
6538c4a442b0a6cd09beee94c474a130 *R/crawlWrap.R
d0fde0601947308d2705960803cf54dc *R/crwData.R
5a698331ceadd4faea578b08824eea12 *R/crwSim.R
d9eb79ac72a971db83307fdce825fb16 *R/distAngle.R
c96b673cf39ee9f0a45214ce391ace89 *R/exGen.R
8ae14f22597d70f2baa8a56ae767007c *R/expandPar.R
d972d1672f7d70ac6ba98daa175ec328 *R/fitHMM.R
32067f4bd4a413c4a085b47e1b50cd60 *R/getCovNames.R
a29f30c688782ffe9847554970b9e5b3 *R/getDM.R
73d3f8953cc1f95a9c66ed3bdfd7a60c *R/getPar.R
4e7d9755ed616c385fa32de78de672e8 *R/getPar0.R
1c3f1e699e0d57a9276a7b67dcbf59f7 *R/getParDM.R
de992e9e89b47b4732de3987e1a8e0d5 *R/getSplineDM.R
967d320e3fe54ea97158c0008d04fdfc *R/getWorkBounds.R
6bfe04d2847f116cc887e60051ab8239 *R/getXB.R
b9595c56e354e9df76217f189883fcdc *R/getboundInd.R
faa05ff80e026973b73a59461a981f15 *R/is_formula.R
3d38e53b4532cfe7ef99d96a0ce1e882 *R/logAlpha.R
0c5caf8fc6a3a485b4976e959129e0f8 *R/logBeta.R
eebe8b3ae6edb392fc61233e8394e28f *R/miHMM.R
d03ccb3273bf3df83944bc079707858b *R/miSum.R
16ee43384e1242d78702ee4d9b4dca3a *R/momentuHMM.R
775930039920b42f9c5f31b5f58c4292 *R/momentuHMMData.R
b405b090632e93685a741fe2f8816d12 *R/momentuHMM_utils.R
67765aec21fa1da2ae859ce694baa076 *R/moveData.R
e9fa9e3e023050b24c6db06a79b06cc2 *R/moveHMMwrap.R
83a04b6c6058b97486ece7e0aa963b93 *R/n2w.R
d2b53e9b470d02862db94088c1ce5bcb *R/nLogLike.R
3c4ed0a993cc8c7ba0ad699e577b4476 *R/parDef.R
409ef2b1379e2b65dff8df11b839118f *R/plotPR.R
ded6dab52032e4996de01c362b779655 *R/plotSat.R
152a3670c1b145e6400ccb45d9778ba5 *R/plotSpatialCov.R
577664acb01c15b4a8fde103bc71834d *R/plotStates.R
ce9a907fecf729193e8658abcee68744 *R/plotStationary.R
cbee9ba766fccd872bf1921b146332e7 *R/plot_crwData.R
1b102f20bb48e131ad8229d12a6d7d78 *R/plot_miHMM.R
2d668023b40d1e2b89b5dc854a040504 *R/plot_miSum.R
bff769044a8ad5cbf51ab048a8c46001 *R/plot_momentuHMM.R
4ad82a32dd035ee773561ff27a79181c *R/plot_momentuHMMData.R
59750a5f6ec0b82c908bd506cc67d4f1 *R/prepData.R
2379b6177cf7ede6a8889d555a8697ba *R/print_miHMM.R
7fa28323b52d4f9bf0c5800387c0f123 *R/print_miSum.R
2b1da847cbe4d90c0e07dd491b852b07 *R/print_momentuHMM.R
05fc2781bd761d33fcb8c147e8cd4a5e *R/pseudoRes.R
7e4afbebe3ef42a5a8d5eefd32387467 *R/rwrpcauchy.R
a113d790afcdc2d778f4cd30084d3f9c *R/setModelName.R
d5982417ecb281b70594db1510948ae9 *R/setStateNames.R
a270518522ddb48644da2a0aea5d951d *R/simData.R
ac9b90b042cf734fb46318697349aad6 *R/simObsData.R
4cab4f8d4ed4d10eb8d7beba9ccc0008 *R/stateFormulas.R
3c4b633b41da3c1dbfcb3f24d4f7632a *R/stateProbs.R
82b8a8feee641f5a4210262a4e591421 *R/stationary.R
547c1cf18efd4c4ed9d0e99b223be602 *R/summary_momentuHMMData.R
dc2ade4d29e1e66599fe385d25388123 *R/timeInStates.R
5bbb9b34d8f01ea8ff3bd9ef965243bf *R/turnAngle.R
19be8100613da84d2e317f7527e86cff *R/viterbi.R
f6e160b41aa1cce325e9724279171be5 *R/w2n.R
af7f325ad5868732e7dff594e85e0810 *README.md
24994d4943a5ee8958cc5fac9149b479 *build/vignette.rds
7390e7a1fa1acfae1e300f52d42fb6a4 *data/example.RData
cc2ab733f72968df6da42bea70151e14 *inst/CITATION
60eec584af86404330ae3ab7b0165465 *inst/doc/momentuHMM.R
63421901facc0dcf7b6b3f9cfb05cd74 *inst/doc/momentuHMM.Rnw
441eda0f42734743a76a9f01aec66d7b *inst/doc/momentuHMM.pdf
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7273db5dc433d9cfee8167c99be5977a *man/AICweights.Rd
44bf8518451bd535f71b885ed70d351c *man/CIbeta.Rd
25db62a4edc225226ac675f3352c3c1c *man/CIreal.Rd
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9d27860ae0cd9aa3b3cec5068a6514b2 *man/MIfitHMM.Rd
116e724318db3651f0c25f62c7d59854 *man/MIpool.Rd
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c4a25ec0f6cc930cd27a4c813523d25f *man/allProbs.Rd
82f592174fb588df7010162cac4c6929 *man/checkPar0.Rd
6e32f6d5350e2b0ceab9d6de60c806a8 *man/circAngles.Rd
5b9bab742b2946ca43d9b33a6d756f5b *man/crawlMerge.Rd
7aaea0ef4345801f11694c5e3005d49c *man/crawlWrap.Rd
d88134344d8e5940f1bda0ddf76503a0 *man/crwData.Rd
7c4f0364b276f37ca5469c7c6c7e5a12 *man/crwSim.Rd
e535053ebd10b6688fc9b43db4fd03f6 *man/dbern_rcpp.Rd
5441f92d4a0edf89fe246e611ae20d2a *man/dbeta_rcpp.Rd
953a2c8322835daf83aa938ce45b9aca *man/dexp_rcpp.Rd
71b84c528e1770689c60b5ea9aec947b *man/dgamma_rcpp.Rd
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d941188f0a5fa30c719a5ae93fa1318f *man/dlnorm_rcpp.Rd
aa18dff0eb871621b5f2febdf59dd27b *man/dnorm_rcpp.Rd
faddd36043704acbae96a6ab880addb9 *man/dpois_rcpp.Rd
c331d29d31c63bd1362d0a6e347848f5 *man/dvm_rcpp.Rd
c8420c448a9d8ad8c2fe5f5ea309de93 *man/dweibull_rcpp.Rd
66551b21df0122b11cbe482c094c8b62 *man/dwrpcauchy_rcpp.Rd
8137c61502545942db3d17b77c0e5471 *man/exGen.Rd
2d5f3ac7ccb6e0071a678109fa850539 *man/example.Rd
2020aad6b97837d86d97163987a7b977 *man/expandPar.Rd
58354be57475d9c25d3488267374aeaa *man/fitHMM.Rd
df7ef0066b8a197871aa692b10487159 *man/getCovNames.Rd
cacdfb8ec83709a43c0fcfe1df8288ab *man/getDM_rcpp.Rd
5dd6595b2b47705da596e850cc4ec01e *man/getPar.Rd
1dfe62443421714f5c6840c967fc29a2 *man/getPar0.Rd
24261a7a48095bb303c7899db5572d17 *man/getParDM.Rd
6375fc4db9a7c07d05fa4f7613dca4de *man/is.HMMfits.Rd
769f8269e0796d1b55b410a736004467 *man/is.crwData.Rd
295ab23d1cf4ec04454bb7ed4c956754 *man/is.crwSim.Rd
cfd70d5888ef05ce290bceb03d78b745 *man/is.miHMM.Rd
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4425b3ad0d541ac7b994646b80866c7f *man/is.momentuHMMData.Rd
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a9a3abc6c5315c8882c9678c98649bcf *man/logBeta.Rd
1b6981f572cf4e63b831c487dd960d79 *man/miHMM.Rd
6b453dc727b22323858a9a5c3c8e6cf3 *man/miSum.Rd
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5bc98273d05ea49b6e4ccd09e89a0e51 *man/momentuHMMData.Rd
37c5d6c23cb3562d513ead1bba664441 *man/n2w.Rd
43576ed1307d9acbe1cfdcaf9f2ca393 *man/nLogLike.Rd
3f1325200d8945a0ea08b22e27bc9a0e *man/nLogLike_rcpp.Rd
126c8548b90b454bcb050b50fc335e12 *man/parDef.Rd
be3decca1ef96dc92be4adddda5006c2 *man/plot.crwData.Rd
fc4753f6a28e6c47384177f43ef63989 *man/plot.miHMM.Rd
a5631bdc229403b3e3194a6a9ae6adf3 *man/plot.miSum.Rd
3d55018d09cdf0a687eb0f3c450293b7 *man/plot.momentuHMM.Rd
d9303b7274312478d2fe93ec60185854 *man/plot.momentuHMMData.Rd
22f401f4890c5443fd575bc0ba7cfb08 *man/plotPR.Rd
6563111fcb9360da7f30609399c958eb *man/plotSat.Rd
86432f66ca4363b6d8c45f712d17d220 *man/plotSpatialCov.Rd
007e686c7dc7a963691bc3cf7c341cab *man/plotStates.Rd
d15c02ec1cf83e1fc3ec7ded5d81badf *man/plotStationary.Rd
5962aa3af24cdd522c02d2b362a966a8 *man/prepData.Rd
a342f5728b8b9a81985485266f37a32b *man/print.miHMM.Rd
e5dbdaed3be54d0440343bbfa6d6c630 *man/print.miSum.Rd
06053f19ceb3740e1e6ea33fa3547b11 *man/print.momentuHMM.Rd
5046639ffcb90c15419225e0b51e3766 *man/pseudoRes.Rd
9eb60ec8b638fd09af4d68860380aecd *man/setModelName.Rd
58d422e2022e310b3371a8fa258798dd *man/setStateNames.Rd
7e88ed6d5d0322c6c63a023137d075f6 *man/simData.Rd
0ecb974bbdf45af1a5256196f3f8a4d3 *man/simObsData.Rd
56d9a086eadf79413005afe74aec5c1e *man/stateProbs.Rd
8ec52b3077df97da3cceef4bad82bb1b *man/stationary.Rd
cc4d4a15f8370f05e3d9d1b10a816f73 *man/summary.momentuHMMData.Rd
eb83f0266e6ff5c74eb0a1bc0a42964c *man/timeInStates.Rd
ee3358fb8723d77fc500327c49f70672 *man/trMatrix_rcpp.Rd
d020111feff192e6ea8f281e1836c62a *man/turnAngle.Rd
c65c34bdfbf1d35591a5d8c8017c2363 *man/viterbi.Rd
4ee0dd084feedd3bd6533dc7485913dc *man/w2n.Rd
8e6e6637c2eecd8e072911d063d4e108 *src/Makevars
ebb1b1d02fe96c4684d377f9ff777588 *src/RcppExports.cpp
2368756b524263645d3e24d9ece7c62c *src/XBloop.cpp
56fbf243d8c64e2059b96d98afb8a71b *src/densities.h
07f72ae58e5fd258cd9a3d78678ccb11 *src/getDM.cpp
b873816fe6551c9db0c0f68d90deb8c3 *src/momentuHMM_init.c
13594541ebc817d33e7215bde11a64cb *src/nLogLike.cpp
b99907d8a0d34a193542a13b518f80f3 *src/trMatrix.cpp
1fff7b3de6ed1117db2b60f2b61c4f07 *vignettes/adjcalc.sty
2911d87fdbecd53be77c1a1cb2df74ab *vignettes/adjustbox.sty
2a0744f9022ae376765b4b4cc100e463 *vignettes/elephantExample.R
b0a4c731f9b231dd07ef96cee2696b73 *vignettes/elephant_plotSat.png
9bffcecefb300ecebbe2bf030596ef84 *vignettes/greySealExample_TPM.R
017af4f52faf04d0bff954ea1ab56ad7 *vignettes/groupExample.R
35f9c2ca0067f6c52182f35483a2856e *vignettes/harbourSealExample.R
b7aaa5cd69b90167c63e814f88069804 *vignettes/master.bib
c47cc4ec529ccca0d7c5b726584b784d *vignettes/mee.bst
454b00d66908e6d1e559df10c5de7464 *vignettes/momentuHMM-concordance.tex
63421901facc0dcf7b6b3f9cfb05cd74 *vignettes/momentuHMM.Rnw
82e82cc67fafc679c7e447739336df1c *vignettes/nfsExample.R
9e124e984e3b3020ad5c5881e731b861 *vignettes/northernFulmarExample.R
df49dec52f395d82fcee5979e7eb944d *vignettes/plot_elephantResults001.pdf
d5cb6148549d03c8b128a9a36f86ad5a *vignettes/plot_elephantResults002.pdf
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b7de7851bb90d40f3adf7ab8980b3920 *vignettes/plot_greySealResults2.png
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7cfac296f2fc51e5b840dc3a508f1dc2 *vignettes/plot_groupExampleCentroid001.pdf
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c8a931e913d1a55fc76663b34315e06c *vignettes/plot_northernFulmarExample.png
85adfa290267b0dc4d151272133d7849 *vignettes/plot_sesResults001.pdf
2e21071bd5cbd997b452de858ca2aefc *vignettes/plot_sesResults003.pdf
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4588147cd115c29a6abe850d7dad0d0d *vignettes/sesExample.R
5b0894c5ca9a10782d3118440a31a8bd *vignettes/trimclip.sty
fe6361df9ad3433cd91bf1797a04a14d *vignettes/turtleExample.R
8988ce2e698abb1969c3dc818ae0d4d3 *vignettes/vignette_examples.R
e580cd95574b7594b68ada17f00cf5c6 *vignettes/vignette_inputs.RData
