3d9763822513f66be43c30bb9a128d48 *DESCRIPTION
19366138f8257a166e6edd3e5bc84a26 *NAMESPACE
6db2b5657f47b9b40d680d3f9b1c9cfc *R/ML.RatePhylo.R
a079b7efd65c73ba24aa589b6add4433 *R/RData.R
d23c5815ebd84de6b02d55b97ac3d2ef *R/RDataTree.R
6605b96fcd2429b3f5d029cb2f2a1a21 *R/RData_finch_allopatric.R
71a6e4ab3d45b18e87d14c5fc5eb0ca0 *R/RData_finch_data.R
56ea9cce3c0f6f98646c28fdb011d4dc *R/RData_finch_tree.R
9db8980f96ca7f64ba872d2be2724b88 *R/RatePhylo.allCI.R
7d7e3d8250f51a1e439a25bb3992a81e *R/addFossilToPhy.R
dcaac193723889d2af00e6bfb6e7864c *R/as.rateData.R
cfa5744addd4e0cad965d0e8e3f4fbbd *R/as.rateMatrix.R
9841a90662ae40491744daa17ad05e52 *R/blomberg.k.R
4ad41b1abd5de757d4de0347aabad270 *R/calcCutOff.R
af0d1934da6bd3bffb0c2a274e0cb24e *R/chr.disp.lrt.R
22a2dc6f1fa7896ba2a930110a466e36 *R/chr.disp.param.R
1e2f05faec2b16a425e4deca6aa6c43a *R/chr.disp.sim.R
2de769e1b34d6f9bad2f077abef19655 *R/chr.displacement_fun.R
bc19da3bc89546d2119a8e119dddd9b9 *R/contemporaryPhy.R
18aa214252f98f6f64e177b8b78d3831 *R/dropTipPartial.R
32f3831a1b61ca71d974afa767b039a4 *R/fairProportions.R
777555ea509daa3b3db96108bf4b9a61 *R/likRatePhylo.R
89e11ff329693ffd47ff1dc784ca7677 *R/likTraitPhylo.R
63ea7fe1a4ac35a9014899e27cd4e483 *R/mcmc.plot.R
cfc50836064efdd9a5483f909086cfaf *R/node.descendents.R
63c478e0af18ddca446c580cf8ccbd37 *R/nodeTimes.R
563243daad327d377c65adc8f333e8b0 *R/optim.likRatePhylo.R
3cb966067ce797b9eb97d6ee4afdc239 *R/phyloCovar.R
5c0b2e9b74ceaa6c283edbec8b1022e5 *R/phyloMean.R
4ad61880fc0803f9ceda1a83a9d0a629 *R/phyloVar.R
ab6a8b31a549bf00909d5a515f75d663 *R/pic.pgls.R
d0b88425dfbebcae6808bb501542f183 *R/plotPhylo.motmot.R
0568096791c64993c89cac45ed8d30a8 *R/sampleShid.R
79bbe4dc43239ba43f8a6c13270fb791 *R/sortTraitData.R
b3fc43d6a7952018a8b8e442658eb7f5 *R/supplementary_fun.R
9c0fe11e7e045ebd536cc1d00a31d160 *R/timeSliceSummary.R
f060050848f7239c613472d0f2a62097 *R/traitData.plot.R
26afdd92ec5dc26a107624e15d79ffe5 *R/traitMedusaSummary.R
1e707040c1922797e0596389d5c31458 *R/transformPhylo.MCMC.R
e19b3b171956ac857f8a8a27ef7bf965 *R/transformPhylo.ML.R
246d72919a68b818906a535f91b6a82b *R/transformPhylo.R
08a522077f9bb49a8fb320ee9fe4ae9f *R/transformPhylo.ll.R
08ffbbad06f301b7d54e77c8d6974a87 *R/transformPhylo.sim.R
16e727e91d2d9d99568bb68213ae8b03 *R/transformRateMatrix.R
982585908202123a86c15b81f31b90b3 *build/vignette.rds
df5ddf3887de052637805be045100145 *data/anolis.data.rda
6ff9c4c78e8ea31405293d3da3ba7dbd *data/anolis.tree.rda
1019a39c92c9c2c8b6306604c94b80c8 *data/finches.rda
6449938b9e0dd132c5f257758dd89f0a *inst/doc/motmot.vignette.R
539474496a781dee7a167731a4766369 *inst/doc/motmot.vignette.Rmd
3b4cb0e6dfad82f45f954c5374571baf *inst/doc/motmot.vignette.html
82210f8908b96c138d6f7a0e7c7d5749 *man/ML.RatePhylo.Rd
51bcd14c20f3b61af229fa782625e7c6 *man/RatePhylo.allCI.Rd
6e269cff75ee842fd7eeecd3c51bc0a3 *man/addFossilToPhy.Rd
7d19dd4a6fc5113308df73cc5a43d541 *man/allopatric.data.Rd
f009b8faa0eda7e4b4dcdd8c0962f04d *man/anolis.data.Rd
678a7f9bb4f1e30ac29b64826077a2b1 *man/anolis.tree.Rd
7aa3ec21a34fe0af0c0647bd73f3ce74 *man/as.rateData.Rd
e4d730f410644a3d48228483abd50e03 *man/as.rateMatrix.Rd
90fc25bbfdc34d734c17e05ac949f038 *man/blomberg.k.Rd
3e23e342607f197bb01c95b16c73c7cd *man/calcCutOff.Rd
1a55e788566cb73cec3af223e1ca5354 *man/chr.disp.lrt.Rd
3a7f9deff8c449fba807c500db909326 *man/chr.disp.param.Rd
cd081589d2cbb212ad2385c46f1a7d30 *man/chr.disp.sim.Rd
961032d5c3800b1085917265741d0fd1 *man/contemporaryPhy.Rd
15d305e7fb85d6812f21b19322018203 *man/dropTipPartial.Rd
f680dc4ea65d0cb89e85ef42d7d6a948 *man/fairProportions.Rd
2c9f3003451f302e08e3812a28e7158f *man/finch.data.Rd
6f86c97f6b3f7c1a826ae4821eae2417 *man/finch.tree.Rd
1c8ba6db64c26069f3306cf4ce487539 *man/likRatePhylo.Rd
67a204d80cdd01c4851e985c88c81af9 *man/likTraitPhylo.Rd
4459836b2b84a9acf1b44bb0b0fd559c *man/mcmc.plot.Rd
b751ae0fc27486440012989e52922a98 *man/node.descendents.Rd
9d9b68221e430ef853a2ca415be2c30d *man/nodeTimes.Rd
782d1d70596450df3cef320c36683a12 *man/optim.likRatePhylo.Rd
ff08fa237b37965099886ac752eafb4a *man/phyloCovar.Rd
996e33153182b5d59f3242eaff8e12af *man/phyloMean.Rd
1899bab362c4228b7325fb895facd4b9 *man/phyloVar.Rd
75198d8b93ae9c6a7694b7a6c4938fc3 *man/pic.pgls.Rd
e5839906c07e6b08e5ad4d2d93792c14 *man/plotPhylo.motmot.Rd
7b1bf47a9b42e244c7a4db303afe859e *man/sampleShid.Rd
dc07b755fd294497aca65c2727a71e3c *man/sortTraitData.Rd
1e6ea478522cf913e2ac0433ea6ad940 *man/timeSliceSummary.Rd
10f13d162600901e1221e254c6d5b12d *man/traitData.plot.Rd
7ed649c2c2d54e5b43aedc08a817c0ef *man/traitMedusaSummary.Rd
e40ad1b5a3ace6411b9f0658fef4475c *man/transformPhylo.MCMC.Rd
ec92c308ae489b6d7d7a6d69ee85f3e6 *man/transformPhylo.ML.Rd
fd0d5dd355ed940ef1f41575dfa51067 *man/transformPhylo.Rd
b0acfa3f22821547ef500a8586c30119 *man/transformPhylo.ll.Rd
c57aa60b751ab940cedd6c0b63217228 *man/transformPhylo.sim.Rd
83493d5b2265709cbe9a9d03d35bbc60 *man/transformRateMatrix.Rd
0308d2c5db869f404ac51089c8fa9d37 *src/Rfunc.cpp
13a86b06f8c3f5120c9e1f070870f38e *src/packagename_init.c
f65503544a3e235deb5e31f22fc7743c *src/sim.cpp
92f878f0e674fc0cc83235f18a8668d5 *src/sim.h
53e8f41570af8c12d6e5cdb0e8696954 *src/tree.cpp
e27de0087b6e469998b53e2dfb57bac9 *src/tree.h
539474496a781dee7a167731a4766369 *vignettes/motmot.vignette.Rmd
