4ec9ee9e545aee5936e2e0bf8a97549f *DESCRIPTION
0632cc7589c46bbf4981f0a778f1ef2a *LICENCE
6a15b9091ecea40ea757112c2931a13c *NAMESPACE
930219ce2c9136246357d30d8849f89d *R/PhyloSDEestim.R
370ce561d0e45f648d81c875aa96b1e3 *R/bootstrap.R
f2ddf36bebd5ca1036b1cec301e383c2 *R/ci.R
9cf8f785cd1de0354b8bd76d657ac2bd *R/estimBM.R
48eb61b818e277179ebc122c5a045e05 *R/estimGLSGC.R
95ce266d49e594a8f271d03be89632e0 *R/estimMAXLIK.R
8a8d7fde23f2e6cb706bbd4c1c8fbc12 *R/evolmodelest.R
c8d50da2fc5e60f83864d3aea239edd5 *R/fitch.mvsl.R
7ebb10e5dd6c0ac0283fb6bb2a422795 *R/getESS.R
f7680ba3f0add46f4a88ba0bd5134c3f *R/loglik.R
4d3d369498660b6f682b01305aa4b09f *R/make.states.mvsl.R
5a8a7efa822941d06aa687630b6c761c *R/matrixexps.R
f5b6d7d46957e4b398f5e26d2465446f *R/matrixparametrizations.R
496727005450e5af49a873e8196fd876 *R/modelparams.R
1062387a5a092a6094118115064ab8b2 *R/modelparamssummary.R
b8f54ba57b68b52c1c68cb6dbd647290 *R/modelparamstransform.R
dcc23a51ec0cea4edddbdf78135ef1b3 *R/phylgls.R
2614eb2cd4c9a03dd7e2546754521942 *R/phyltree_paths.R
89e2fe6de45d95da3fc79bd9d65d130a *R/precalcs.R
f104ba636d9ae9f24ddb48ddf9f1ab0d *R/regimes.R
fe65f2a983d4bd861c1d56a7898d8891 *R/sdecovariancephyl.R
276eec3a6aaadb9cf8efdc0aa04d207b *R/sdemoments.R
b492eea3caaf64334857ecf9f4a75507 *R/simulVasicekproc.R
546993e610f1afb2c67160a1ac1485fd *R/simulVasicekprocphyl.R
3f10235448e0c1d7200d299f5646b17c *R/simulclustphyl.R
b5b6fe217842d0da2d0cd521be45d34c *R/trees2slouch.mvsl.R
87a8ad2c2efb88b7172d6f418533d990 *R/wrappers.R
2a84eff7d381d2ec8b9d895810903c9f *build/vignette.rds
ecf040c24e58cebdeb3c3456aca17000 *inst/CITATION
eb723b61539feef013de476e68b5c50a *inst/GPL-2
d32239bcb673463ab874e80d47fae504 *inst/GPL-3
8755f5e37a5a85310e6ec64caa493f63 *inst/doc/mvSLOUCH_Carnivorans.R
1ba2bdb9288db9b016ba38f488bf7de7 *inst/doc/mvSLOUCH_Carnivorans.Rmd
ce7e35bd94e6265b5bc3eee5f32efd91 *inst/doc/mvSLOUCH_Carnivorans.html
4a13a69dff74e37c8d8b55a1f5ac2c1a *man/BrownianMotionModel.Rd
f027d1aa78dfb13368aa39d3af53e5d0 *man/SummarizeBM.Rd
7f8ea90d097aaf48840579ca1f8ccadf *man/SummarizeMVSLOUCH.Rd
363281aae529dc447c1bd60c743cc069 *man/SummarizeOUCH.Rd
c0a91f15a43d7705fa26597bca628843 *man/drawPhylProcess.Rd
37a5c99ad79ac66f791b3f58aeffba5c *man/estimate.evolutionary.model.Rd
9300c78877a2acec7de22e749c18cae8 *man/fitch.mvsl.Rd
43998b575ed42f821a4fc92f11767a3b *man/generate.model.setups.Rd
4b9cc389716a32fbd32b1e1648304d0d *man/mvSLOUCH-internal.Rd
65c285a009a5c58cc45ada0f00157cbf *man/mvSLOUCH-package.Rd
5f624395708edd7d76f243be8d70e4b8 *man/mvslouchModel.Rd
d81d0ed13d57cfd18ccde080fcd676c8 *man/ouchModel.Rd
96d6d02b61dd1fb7e091c0bbd86b69e0 *man/parametric.bootstrap.Rd
6d62e6605ecbe5f898c8a3ed18b764dd *man/phyltree_paths.Rd
9fd4fef1adbd434f5f945c12bee96b88 *man/plot.clustered_phylo.Rd
41f37ed31cf260cdce0ad311e5ed8d9a *man/simulBMProcPhylTree.Rd
e77358a67ab4e4ca4bf19e0f0c750e08 *man/simulMVSLOUCHProcPhylTree.Rd
c53363b763b388ac819478322985c2c7 *man/simulOUCHProcPhylTree.Rd
123648b78e6232fa3383ccfb89c2d3b1 *man/simulate_clustered_phylogeny.Rd
57ee207cd1921741f4c75e1f76704d15 *vignettes/Carnivora_mvSLOUCH_objects.RData
4c9ac6817bdc52f2880692eb00665c70 *vignettes/ScaledTree2_fan.png
1971a9fd3acf44429b8b3e317ed91798 *vignettes/ScaledTree3_fan.png
262a50830726aa0a1591bdd840c5c8f1 *vignettes/ScaledTree4_fan.png
6fbb093f794e698a92270cda178a91d2 *vignettes/ScaledTree_fan.png
1ba2bdb9288db9b016ba38f488bf7de7 *vignettes/mvSLOUCH_Carnivorans.Rmd
14a185ebf686ad1e6ff870bb1fc84fda *vignettes/refs_mvSLOUCH.bib
