d4fad18932e620b2dd4c50d003c48b9e *DESCRIPTION
0632cc7589c46bbf4981f0a778f1ef2a *LICENCE
ed0f9c1a8931d7974a4878bfd7f77e1d *NAMESPACE
01e1265c45b462ba260b9d0686298b51 *R/OUphylregression.R
317c69cf1da0904d6ad52b4cee32d08a *R/PhyloSDEestim.R
370ce561d0e45f648d81c875aa96b1e3 *R/bootstrap.R
c9ceb0ef0f9c35e246392ff6aa3f9643 *R/calls_to_matrixcalc.R
f2ddf36bebd5ca1036b1cec301e383c2 *R/ci.R
597fb0e9ab6a2eb501269ea51c671dbb *R/estimBM.R
48eb61b818e277179ebc122c5a045e05 *R/estimGLSGC.R
95ce266d49e594a8f271d03be89632e0 *R/estimMAXLIK.R
034236f9b285899f5cc4b611b11df9cc *R/evolmodelest.R
c8d50da2fc5e60f83864d3aea239edd5 *R/fitch.mvsl.R
9c27fbc0cc27becf1eb124d539d66eb1 *R/getESS.R
12aa49f91ee69ef0aeb269ec7f644455 *R/loglik.R
4d3d369498660b6f682b01305aa4b09f *R/make.states.mvsl.R
5a8a7efa822941d06aa687630b6c761c *R/matrixexps.R
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496727005450e5af49a873e8196fd876 *R/modelparams.R
5452ed76ddf978af6bc3668642c4c3c5 *R/modelparamssummary.R
373a682899f602833c64a87fb3c796df *R/modelparamstransform.R
7c8af4800aa21621a5d04d3085c675f8 *R/phylgls.R
2614eb2cd4c9a03dd7e2546754521942 *R/phyltree_paths.R
45d72350776dace9ee69c12df4d1152d *R/precalcs.R
77ce3b3091cbef741c06e9346f12efce *R/regimes.R
750cc3b306b3264462eba5cf8c264cad *R/sdecovariancephyl.R
f2fda286ba898f8c940e20f55cb179e1 *R/sdemeanphyl.R
52c37510d307dee442fccd47d74da0db *R/sdemoments.R
6fd9e4267bb7307d56b80f3ac16861ea *R/simulVasicekproc.R
957f04a3802788d3bfc47edf6196e1f7 *R/simulVasicekprocphyl.R
c5d5cb5c2ad7f213d1704ef54f72fc44 *R/simulclustphyl.R
b5b6fe217842d0da2d0cd521be45d34c *R/trees2slouch.mvsl.R
89c704f811386b023267a4c45a2e000b *R/wrappers.R
604b8e901f887aa02f98ff1a01ae6c4c *build/vignette.rds
c22d03eb5740482fdd4b2b9a51cde59d *inst/CITATION
eb723b61539feef013de476e68b5c50a *inst/GPL-2
d32239bcb673463ab874e80d47fae504 *inst/GPL-3
51eb8a6dbe853b376b40601818a2eb13 *inst/doc/mvSLOUCH_Carnivorans.R
513496100ba853517a8380068c664df0 *inst/doc/mvSLOUCH_Carnivorans.Rmd
f8fced8476adbd5c324c82d11ca5efad *inst/doc/mvSLOUCH_Carnivorans.html
e822885c501783f0701469914e7a9849 *man/BrownianMotionModel.Rd
dea8787afd3d3e6aebab2261002e65f0 *man/OU_RSS.Rd
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2bc9a4ad1b6ac0862181b83526bc09f3 *man/OU_xVz.Rd
9a156994d9ac129745a844464c1d6fa3 *man/SummarizeBM.Rd
ea80c01e1c11462cbb4807fb87d9ef52 *man/SummarizeMVSLOUCH.Rd
6b456ce383611ce2f14bc181f64c03b3 *man/SummarizeOUCH.Rd
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5ac4e96b2c33c5ace6af34f70f0cf02b *man/estimate.evolutionary.model.Rd
9300c78877a2acec7de22e749c18cae8 *man/fitch.mvsl.Rd
4df1037f3ac5740ad206af7c5773a406 *man/generate.model.setups.Rd
d49764417f0b8c47bd6d8e75bb6d4613 *man/mvSLOUCH-internal.Rd
0b15e735c19864fcb01a0360ee0a9df1 *man/mvSLOUCH-package.Rd
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0417b7b2c6ec0b907edd0fc0830f1619 *man/ouchModel.Rd
919cd3caaea39de618e1854123383c50 *man/parametric.bootstrap.Rd
6d62e6605ecbe5f898c8a3ed18b764dd *man/phyltree_paths.Rd
a7bc6a037be50d44025df0d7f6eed038 *man/plot.clustered_phylo.Rd
8b02ffda6a72dda888c5a839e85a3061 *man/simulBMProcPhylTree.Rd
7fe9effcc721f03b2a63710aeb2172eb *man/simulMVSLOUCHProcPhylTree.Rd
5ef6a9de413772f66585c4b3ad0f63f3 *man/simulOUCHProcPhylTree.Rd
4612a12bff12343c79c0ab8130d98699 *man/simulate_clustered_phylogeny.Rd
9029f672253d3eec9f2c26b2940fdb3d *tests/testthat.R
7e4681cdfd50773fdc1a5901fa9a4ba4 *tests/testthat/test-BrownianMotionModel.R
c095eaaf4f6e91da91db01ae755fea6a *tests/testthat/test-OU_RSS.R
de69b77e458dd47475e5a68af8c44dc9 *tests/testthat/test-OU_phylreg.R
506b28d02c2b82a9b86d94c8051ebed1 *tests/testthat/test-OU_xVz.R
607b2693a636458920f92dfed49bcc94 *tests/testthat/test-SummarizeBM.R
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b3020a7c0dc92aaba984f71cc80c3c91 *tests/testthat/test-SummarizeOUCH.R
2b8b6d640b1ce420e5b7bbfccdf0f6f3 *tests/testthat/test-estimate.evolutionary.model.R
bab93e200879c796932783357bf4b488 *tests/testthat/test-fitch.mvsl.R
598e7f31579b5530ca0e1d29042f3058 *tests/testthat/test-mvslouchModel.R
65e43033b1a9f95600e085d43aaba4cc *tests/testthat/test-ouchModel.R
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8c802c92f8c8b58d7c921077ee2bc05a *tests/testthat/test-phyltree_paths.R
ff1b313169a380fbe73fdc2e03f9ca33 *tests/testthat/test-simulBMProcPhylTree.R
a4282242ff7486fc794fd6c492cc4c40 *tests/testthat/test-simulMVSLOUCHProcPhylTree.R
9e489a45fe746fed4dad3f3170069be8 *tests/testthat/test-simulOUCHProcPhylTree.R
d72702f2b7811ada7ae3477cb5a99e6d *tests/testthat/test-simulate_clustered_phylogeny.R
e8ebdf5e8213c6326a99add127fc947b *vignettes/Carnivora_mvSLOUCH_objects.RData
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6fbb093f794e698a92270cda178a91d2 *vignettes/ScaledTree_fan.png
513496100ba853517a8380068c664df0 *vignettes/mvSLOUCH_Carnivorans.Rmd
14a185ebf686ad1e6ff870bb1fc84fda *vignettes/refs_mvSLOUCH.bib
a18c7261517939b31da8df14dbd2860b *vignettes/text_part_2.txt
77f0ff0f96c7cdfb36860ac0f0921579 *vignettes/text_part_3.txt
