6530589c9c427f4232ad0f2b02e41681 *DESCRIPTION
62aa6503423a27bb286b7c63a4a61b78 *NAMESPACE
e45a06116cd0d885ecda471dee791f6e *NEWS.md
59ee2c8fdf0f6eb328791b08b2ec97a0 *R/CollapseReplicates.R
e914b5ebf8e737af900cfe6578b43059 *R/DiffGenes.R
75e6a3cc36968f40a68897258665a103 *R/EarlyConservationTest.R
fa0b9470d9eb2a3fe6962c3e88228a7f *R/EnrichmentTest.R
906f3d75f284594af7c03189da0541dc *R/Expressed.R
a8d94efa3e53d016e98e989f99e4181d *R/FlatLineTest.R
5b8c805649839830c299dfe96f497dd7 *R/GroupDiffs.R
3105e9ba802d4332b49e8429114935c1 *R/MatchMap.R
7fd0506d9f61d3c7f92e17a521352eca *R/PlotBarRE.R
23289006beacbcb687bf3978f2b79468 *R/PlotCIRatio.R
4ce25b451fa8e61770b587d921f2a570 *R/PlotCategoryExpr.R
9799b94202f252c32d2ad8392f033fbd *R/PlotContribution.R
86b66f26093a0ff42d12bd3b02053407 *R/PlotCorrelation.R
82914da1a3e9dc51f28322de84810442 *R/PlotDistribution.R
26fa995a43869f9e31ea43c8250efe40 *R/PlotEnrichment.R
2513b9eef968e03840d9633c141df648 *R/PlotGeneSet.R
e16bd561da0c84a438f284db207332b9 *R/PlotGroupDiffs.R
2efad4c1b04ff5f1dda2ff96b272ed82 *R/PlotMeans.R
0ac545401c8d111235cf32e5af792e91 *R/PlotMedians.R
a564ba7efafb73e6c4baea8fa429993b *R/PlotPattern.R
39a59df7c57da470dd626dc96b609315 *R/PlotRE.R
b3147cdecb2f5010e71e34ad699caa9a *R/PlotReplicateQuality.R
77c667c352c91cd97db20bfb58d0f657 *R/PlotSelectedAgeDistr.R
7976b0bc17097c11e7b1fb4a588c19f6 *R/PlotSignature.R
853e43c45b4d2b06498de109f83c6717 *R/PlotVars.R
c773fa287a44b943bd616705e05eaf77 *R/RcppExports.R
766582e753dd9d7afb4a00beee93270e *R/ReductiveHourglassTest.R
01046a68f9b71c38ccc48ae222346fde *R/ReverseHourglassTest.R
4ec524835b7a0a97af0193d5a627bd52 *R/SelectGeneSet.R
768be1fd35cd7b2635794722c3145b13 *R/TAI.R
49889dc5ef9bde77978cd3735fb0e90b *R/TDI.R
2da46067d985292087816bf62ca19163 *R/TPI.R
6073e1a4c7fab39822b5d475467eb494 *R/age.apply.R
5ebe2c4c46f00e4abfec202b72b795ab *R/base.R
0f83e8f2e79522209e6a549df4299f38 *R/bootMatrix.R
cc49bcfb8ac1952776fd591c965ebf6e *R/combinatorialSignificance.R
22a292a414a723b7a105d69d4adbfa9f *R/custom.myTAI.cols.R
a8b885d42cf199ea8da7f98bfa6636d6 *R/datasets.R
133ea0d3f0b607620a8356d52e004f19 *R/ecScore.R
f826b1278b8c7e3bd2ca520306091bc3 *R/geom.mean.R
3752e753f74d1cc7a148f5d34e62d462 *R/harm.mean.R
2a898cf4b4ff64296cec4ef4e0c6c860 *R/is.ExpressionSet.R
fe78f5edb407905f539095612a07177a *R/myTAI-package.R
86829974c13bbc37eda99827e7a69ca5 *R/omitMatrix.R
a7a55c872c7fb75436a14b336c0f4bdb *R/pMatrix.R
27cc5f13906b24eca99e3824011e8d0d *R/pStrata.R
c85a0b5b758891a0b7b22d651e72ee5a *R/pTAI.R
13084fd9d8b5fe6939daf0a0f42da3c3 *R/pTDI.R
b97b60780c222a7803157b2faf22b964 *R/rel_exp.R
4b5600a485e822731bddc87ea110b844 *R/reversehourglassScore.R
8ddffa6ea896923e91aaac0d65442386 *R/rhScore.R
d82d02095333016c2697ffd2447c312b *R/taxid.R
e5bf2dfe3673da1fe1d56c7775480e6e *R/taxonomy.R
f5f4d898893bffce7b8f95e4c7552398 *R/tf.R
f1289ffc6697a86ee350db59b88face9 *README.md
8c53d25b4c19a77d841175f4caec211c *build/vignette.rds
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42454c557a67403f4a652f2b8142af72 *data/PhyloExpressionSetExample.rda
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508260f060bf73e4e9e9f7eec67953cb *man/CollapseReplicates.Rd
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54b3edfdd7cadc6277b8b69b1d84e666 *man/DiffGenes.Rd
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56f04f5ddac75b224e75dd1bcdd92d8e *man/FlatLineTest.Rd
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8f1d436725a8731e1f85c0fc405bdbbf *man/PlotBarRE.Rd
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4b50ac3aba4f302b3aad5456c2740d0f *man/PlotCategoryExpr.Rd
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eef4ed22aba1b042cc5d7a5540a31ffa *man/PlotDistribution.Rd
ecd92095582e2db1efe1d53e19b91e89 *man/PlotEnrichment.Rd
f91b5e7bed3b703aef152e17d9125171 *man/PlotGeneSet.Rd
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6c7ae890b94b829ea5fa370acc5fb0e6 *man/PlotMedians.Rd
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2554d4b703b5fdf28e25d17791aa1c17 *man/PlotRE.Rd
600ab22b4b1420ec642f12b2ebebd90d *man/PlotReplicateQuality.Rd
90130af1a76db4aa0e0784a156ce5d93 *man/PlotSelectedAgeDistr.Rd
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b02cdba6394bbee861e0e18f2371357d *man/PlotVars.Rd
270836b0e59e41ffd5bf52c09dcb048c *man/RE.Rd
d926b962829b47c8d0fda102e518fcc6 *man/REMatrix.Rd
d5b86cb5af7e6fa8b4510d865262c726 *man/ReductiveHourglassTest.Rd
2afa3f9130c794b7825dc1600b7f78cd *man/ReverseHourglassTest.Rd
326dd69bdd136f11e2c25d0e1a2889db *man/SelectGeneSet.Rd
e9c1088f51c71522424f4bbbb495bad8 *man/TAI.Rd
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0ab512dd9f23c3504e5014e6d5c8c949 *man/TPI.Rd
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8e85ddc92d203cb73f5cd2ea6e0b1ace *man/bar.colors.Rd
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d8cf4d0d4b3a6e89e36cf8e0dafe3b57 *man/is.ExpressionSet.Rd
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3db9d4cbf3cd7988232a7ef2a6ca2c2e *man/taxid.Rd
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6eb57a4d9a5ced9bdc57f3f3052f51cd *man/tf.Rd
89a1307afd5cbbbca1cdaf66bc694856 *src/Makevars
7b58901131f9e190277e0a8cac416ba1 *src/RcppExports.cpp
3eec90e112c3f1af036433fb8e7b6365 *src/code.cpp
0b71d74b12e1c063e18a823b82883357 *src/myTAI_init.c
b355595d0b5d96ac450ff6c4f5c975c1 *src/rcpp_funcs.cpp
510396716b33300779b32ff07fe0ea5c *tests/testthat.R
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7981890a44f94a3fd792af6e33e1884b *tests/testthat/test-DiffGenes.R
353e3112601dede55c2dee2e26c2912d *tests/testthat/test-EarlyConservationTest.R
0a078788cc0245a77bec931d7f142ca6 *tests/testthat/test-Expressed.R
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8b2d2cb7d1ff588daea9cb04087e0bf9 *tests/testthat/test-MatchMap.R
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27d24aebb04d8e40bf3f73f42c7c0ee7 *tests/testthat/test-PlotContribution.R
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5e35b2cf4d1c68c54d3963e40a69a695 *tests/testthat/test-TDI.R
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3d38a73a5100251a39b7b08d35cab94f *tests/testthat/test-geom.mean.R
ba64cbd6e446912b8a6072b14d181208 *tests/testthat/test-harm.mean.R
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ce282dc007db26254565e4dc21074327 *tests/testthat/test-pStrata.R
4b3d57b0cc9f9378bbde551576a61e87 *tests/testthat/test-pTAI.R
3b8293470cc96dd877382c0bd3e7171a *tests/testthat/test-pTDI.R
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8fc414c2aa167d2dc617dc11b5b5295d *tests/testthat/test-taxonomy.R
24c91a1f7439f88f4c7b2198a5cd3ced *tests/testthat/test-tf.R
c8aca12ed766cc5c03fdea1eb0acd159 *vignettes/Advanced.Rmd
fe8bcf38794d42b50ab7bf1755d4c4c6 *vignettes/Enrichment.Rmd
92e9e619c208e9d184deffac8e3fd75d *vignettes/Expression.Rmd
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6d71930404a9b082ea5afc252e4861a3 *vignettes/Figures/Fig4.png
f06c7ca2537b86b3b16da70a3d6cee01 *vignettes/Intermediate.Rmd
1f51744022a7d3073184ea9225c6d7d0 *vignettes/Introduction.Rmd
c2d7884a531d988c1ba4ef393c6c5e24 *vignettes/Taxonomy.Rmd
