60d06ad0ace6b3f5a5e51b0b84bcb6eb *DESCRIPTION
0655288a67f89bfd5049e2c7e01a35fb *NAMESPACE
9d1b68db34825f640e52f4a1d1fd3a34 *R/ABC_SMC.R
8866f33e143278bafba73505e5ca579d *R/get_average_nltt_matrix.R
2c5c38d961ccc353f0065e40b6d24e41 *R/get_branching_times.R
c0fd163b900064cdd8b10984db1e93e6 *R/get_n_lineages.R
d6031ac8aed01de26c9e77b1c033e832 *R/get_nltt_values.R
41bfcdc7fc21b42e0808faaf59ef06e7 *R/get_norm_brts.R
dd6d00e9f810ee2df9ea3c6ce5310cb6 *R/get_norm_n.R
083ad2369478d90a5bfd7ce309aed113 *R/get_phylogeny_nltt_matrix.R
071c204362a1c0526275315a65b4bc55 *R/nLTTDiff.R
c3bf8e4403f0a789b2f0940da73d7642 *R/nltts_plot.R
0cc4aee94105aeadc01ff37936c8d1dd *R/plot_nLTT.R
737ecb405b7aee7d4e4c9f8a84f06055 *R/stretch_nltt_matrix.R
3bdfe71a94c0b699de3d50e181573773 *build/vignette.rds
a682e93715d8266c234a7e2b3410a43d *data/exampleTrees.rda
d239fbd3b2f6deffce388881b21f8751 *inst/doc/get_nltt_values.R
c3fc12a9487a85276baa0d7b0f26ca8a *inst/doc/get_nltt_values.Rmd
a823d43cd2338bcdd9593b2197b4f150 *inst/doc/get_nltt_values.html
cba9dd3ad0f2d1229a799d75ddaa654c *inst/doc/nltt_diff.R
2e1815a78f14244f02789c621976f5c3 *inst/doc/nltt_diff.Rmd
4e99c4754ef812029ce2d48c5d8756c8 *inst/doc/nltt_diff.html
393ac28545294cc53c3a37c3b011e46a *inst/doc/nltts_plot.R
b4c4e5443584ae181c777e7d8cc279c6 *inst/doc/nltts_plot.Rmd
fff659f058c459eac266d617620072ae *inst/doc/nltts_plot.html
c8537596ec77958fa63bb2a3e2e37368 *inst/doc/stretch_nltt_matrix.R
56af887ca68d2cbb8ff8bf9cc71d53a7 *inst/doc/stretch_nltt_matrix.Rmd
e78aa70f3badd9545b1e241992ded2a4 *inst/doc/stretch_nltt_matrix.html
35fb4948cc7fc0b3437992667237ec3c *inst/doc/trees_with_root_edge.R
068430379ec0d84e33bf712fb062034f *inst/doc/trees_with_root_edge.Rmd
41a5a28d1c0f06c7fa1840cfee7d0fa2 *inst/doc/trees_with_root_edge.html
016b762e243ac6b49c493e5945504b5a *inst/doc/walkthrough.R
e10fdc66f9aa8eeb943b2b5080bf4dc8 *inst/doc/walkthrough.Rmd
63ab9475a2ac0c40a531755487ecf6d2 *inst/doc/walkthrough.html
9a95521c441584d3c1ad004ff8fa66d8 *inst/extdata/issue_38.RDa
f0390884f92421cff34972c5ada87a02 *man/MCMC_nLTT.Rd
981966b80135af2b81e4acd0892dfcd9 *man/abc_smc_nltt.Rd
2ff4a8e406d65787b8375ad6259e096e *man/exampleTrees.Rd
5fa6acc4192be0602f883349facb47d4 *man/get_average_nltt_matrix.Rd
873ccff648d1ba2d8b2558ba39ba8974 *man/get_branching_times.Rd
90d5956a289b92700eb702277c2c3fca *man/get_n_lineages.Rd
afcecb5ca83240d3971dd6abf0645cee *man/get_nltt_values.Rd
6363593226fad031cd7bcef5c8e8b544 *man/get_norm_brts.Rd
ab9ef29fc4b8e25a0d3edc6032822a4f *man/get_norm_n.Rd
93a7ae174133e1ba2d25a942a093d44a *man/get_phylogeny_nltt_matrix.Rd
489325c7b8d98907d466517043db159a *man/nLTT-internal.Rd
0d04df176e9e4cb41260c485f9675db4 *man/nLTT-package.Rd
409842973fab0c23d7bbf5448866a486 *man/nLTTstat.Rd
59f3ea47427f4622926e3063f1178bba *man/nLTTstat_exact.Rd
34a0cbad428cb81402079b3435cc8c8d *man/nltt_diff.Rd
847fc6af3c5f605fab8b19c47853dfca *man/nltt_diff_exact.Rd
0259399335ffb8613b8b692825e83f43 *man/nltt_diff_exact_brts.Rd
550e394312a8771eb0e5f1e6efd05019 *man/nltt_diff_exact_norm_brts.Rd
30bfc165c8238ae5a792faef962589d4 *man/nltt_lines.Rd
4bfd2d105dfbb903d88f26c4a13a4b72 *man/nltt_plot.Rd
0e410973451e0d8d84fb351b10287b37 *man/nltts_diff.Rd
380c87fe7e0ca611d95f57a3d7301e01 *man/nltts_plot.Rd
9bc016b4e0bc3c3b130ebe6f8bac51ed *man/stretch_nltt_matrix.Rd
b8b50ed3f56a110f64210a94d25e359a *tests/testthat.R
9de8c703b6ccf1b0d5dbe44b60dc1a1f *tests/testthat/Rplots.pdf
bd24cf9d1ebb67a0b4194119a3e268b2 *tests/testthat/test-abc_smc_nltt.R
1e4c6b03d7113aee6b15ab892c3323f5 *tests/testthat/test-calculate_weight.R
f35986d476f3ccf75bb0b1eb9526ac4a *tests/testthat/test-get_average_nltt.R
6dbf42d89d16dc00255b421858abdbea *tests/testthat/test-get_average_nltt_matrix.R
4f6b895b34744748f88da78da1c8455a *tests/testthat/test-get_branching_times.R
a24a4aed3881063b99013b05755b40ff *tests/testthat/test-get_n_lineages.R
623d665cff0539bdc4354f7f3b2d6614 *tests/testthat/test-get_nltt_values.R
051a5ae2c5f6bfc28a6eaf46f4c17b03 *tests/testthat/test-get_phylogeny_nltt_matrix.R
abfdd8b6137e832b41b56c4109c4a6fe *tests/testthat/test-log_transform.R
06efd24a8f4a6319c689757558b1313b *tests/testthat/test-mcmc_nltt.R
b08059cfc73c503a53949578fb4fd5f0 *tests/testthat/test-nLTTstat.R
9f518a57d06d2a0531ba174f763bc24e *tests/testthat/test-nLTTstat_exact.R
c0ca5fbf72c6cd4d51b50879c99a406a *tests/testthat/test-nltt_diff.R
8264c4a965fe1efc85e9709027690933 *tests/testthat/test-nltt_diff_exact.R
5bbced9bad3d799e5ea2b5f0f64cbf4c *tests/testthat/test-nltt_diff_exact_norm_brts.R
b2df9e6de4c15e27c634b4d35a46bf64 *tests/testthat/test-nltt_plot.R
cb09f28a8d78c8ba54ef131ee8eedfbd *tests/testthat/test-nltts_diff.R
9717484e929607fb0ec307886088535f *tests/testthat/test-nltts_plot.R
211dabf423813bdd556de4e8095d6dea *tests/testthat/test-stretch_nltt_matrix.R
c3fc12a9487a85276baa0d7b0f26ca8a *vignettes/get_nltt_values.Rmd
2e1815a78f14244f02789c621976f5c3 *vignettes/nltt_diff.Rmd
b4c4e5443584ae181c777e7d8cc279c6 *vignettes/nltts_plot.Rmd
56af887ca68d2cbb8ff8bf9cc71d53a7 *vignettes/stretch_nltt_matrix.Rmd
068430379ec0d84e33bf712fb062034f *vignettes/trees_with_root_edge.Rmd
e10fdc66f9aa8eeb943b2b5080bf4dc8 *vignettes/walkthrough.Rmd
