15526a1ca699b855ae6854b626230ea5 *DESCRIPTION
bc2c383d1c5cd3a9681844b219604314 *NAMESPACE
a0a6e29f53a4d9807a537936b78e7ccb *R/ABC_SMC.R
580bcd3ceb24ec496bb81662de9c28b4 *R/check_phylogenies.R
fca9c0333f1d77058d5fe5f77c7433f7 *R/check_step_type.R
bf75e3ddcf02816c696358ea47e2816b *R/check_time_unit.R
7a8e1f901366663ba84b42bbd98f81af *R/default_params_doc.R
39837f0183675768c5daf4db584ee0c2 *R/get_average_nltt_matrix.R
688f498796ea77e6796198669cfd4251 *R/get_branching_times.R
6d1477b34d1d9e6c5294b6fddf70e3b8 *R/get_n_lineages.R
2a543201c85435a2c98b89587f1ede14 *R/get_nltt_values.R
03ca6278e3aaf9829d389be38aa0e1fe *R/get_norm_brts.R
38650ba2ebc80a5f5dcf08a46035c801 *R/get_norm_n.R
3b4a4c10b5543d4654a83ee1e4097528 *R/get_phylogeny_nltt_matrix.R
ca05899d7114f4d8f34c501ca751a094 *R/nLTTDiff.R
4120ae84bc194d9537d482fc95362f21 *R/nltt_diff_exact_extinct.R
6b04069e0c75cbae5493f221a589b164 *R/nltts_plot.R
cc4f9835095ed4b3460826c480a72126 *R/plot_nLTT.R
49f1236708846d74be91271b6d0bcd51 *R/stretch_nltt_matrix.R
a8059c8cfa85cdd1ebe9121429e0bd1b *build/vignette.rds
a682e93715d8266c234a7e2b3410a43d *data/exampleTrees.rda
d239fbd3b2f6deffce388881b21f8751 *inst/doc/get_nltt_values.R
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c8537596ec77958fa63bb2a3e2e37368 *inst/doc/stretch_nltt_matrix.R
56af887ca68d2cbb8ff8bf9cc71d53a7 *inst/doc/stretch_nltt_matrix.Rmd
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35fb4948cc7fc0b3437992667237ec3c *inst/doc/trees_with_root_edge.R
068430379ec0d84e33bf712fb062034f *inst/doc/trees_with_root_edge.Rmd
9b084f0bb193ec31220caeadf47dbf04 *inst/doc/trees_with_root_edge.html
2930e4771fa75cd3bdd6c428d932d654 *inst/doc/walkthrough.R
e7bb4a039efb1e826c34951969f46ade *inst/doc/walkthrough.Rmd
6305e5b2c100f9764c12c4b8f4d963da *inst/doc/walkthrough.html
9a95521c441584d3c1ad004ff8fa66d8 *inst/extdata/issue_38.RDa
b7857962b6bf380b6d19a6e9cd5dc9d1 *man/abc_smc_nltt.Rd
cc976ecdb962e503b3cdcf20a5a2b0a3 *man/check_input_event_times.Rd
d06a5b3d0aa592eaa5ac60cb3cffc726 *man/check_phylogenies.Rd
4f9268ce24b01857daa5adfd703e5d93 *man/check_step_type.Rd
527a328387b543ff396d2386fdf43dd8 *man/check_time_unit.Rd
6b7d3e7f1cde8ce47010d453fad2e00c *man/default_params_doc.Rd
2ff4a8e406d65787b8375ad6259e096e *man/exampleTrees.Rd
1026d37d62d4a048d9710de920eafd15 *man/get_average_nltt_matrix.Rd
372c7eb5c0a3feccb5dee32a34507d19 *man/get_branching_times.Rd
d96baa7d0f3f2642e589b5adbce5c3dc *man/get_n_lineages.Rd
cd914b267825c432c5dcabf7b7a45d8a *man/get_nltt_values.Rd
d81d283e72d4160212849f48cb0734ac *man/get_norm_brts.Rd
77d93c1af0577bc9de7c2765dd21fd35 *man/get_norm_n.Rd
6290cb0564936f7257ca1a381d02a23c *man/get_phylogeny_nltt_matrix.Rd
a9f98e93c2113306f0395059414347a3 *man/mcmc_nltt.Rd
489325c7b8d98907d466517043db159a *man/nLTT-internal.Rd
415b9490155f734418ff245f7b36c3d9 *man/nLTT-package.Rd
6d802174c448647f2d2f8b579da663d4 *man/nLTTstat.Rd
59f3ea47427f4622926e3063f1178bba *man/nLTTstat_exact.Rd
934a0af34acd70413473e0e9195c2e99 *man/nltt_diff.Rd
0112c6a675fdc94d18345c55834ad375 *man/nltt_diff_exact.Rd
994c8bf4ef195ae7857952cfb3b6f380 *man/nltt_diff_exact_brts.Rd
cbad477635f0f4f14774754f74a54491 *man/nltt_diff_exact_calc_extinct.Rd
a62add6885f8b6e67118fbd2531f9fbb *man/nltt_diff_exact_extinct.Rd
6c8e4de9ba8acf56bc2ccedff7857f26 *man/nltt_diff_exact_norm_brts.Rd
30bfc165c8238ae5a792faef962589d4 *man/nltt_lines.Rd
4bfd2d105dfbb903d88f26c4a13a4b72 *man/nltt_plot.Rd
45a115c69179fc60b0aa3da71281be69 *man/nltts_diff.Rd
a6196d7192e47036decb9da126afdd78 *man/nltts_plot.Rd
813901ee33dea74d2c22a192f4e0bcd3 *man/stretch_nltt_matrix.Rd
b8b50ed3f56a110f64210a94d25e359a *tests/testthat.R
cd0ad25a5268ff42739e36374acfae6a *tests/testthat/Rplots.pdf
1547ca5e5e19117d85f6d0a07033bcce *tests/testthat/test-abc_smc_nltt.R
1e4c6b03d7113aee6b15ab892c3323f5 *tests/testthat/test-calculate_weight.R
5f0a9ac657981c6bf0afe1a084b0fa5f *tests/testthat/test-check_phylogenies.R
06b7c9701099f17156559eb2c25ae216 *tests/testthat/test-check_step_type.R
4a8fc10ecf982b3a9b4e1c130862e934 *tests/testthat/test-check_time_unit.R
2782b41167a432de4aa74cfa6891fcee *tests/testthat/test-get_average_nltt.R
6dbf42d89d16dc00255b421858abdbea *tests/testthat/test-get_average_nltt_matrix.R
4e11f27b2ebf7739931cef154de6fa41 *tests/testthat/test-get_branching_times.R
f0a8f8867ecc90358e5847b86b7a7ca9 *tests/testthat/test-get_n_lineages.R
b976fd004b27bb1722c7bdd3d605b758 *tests/testthat/test-get_nltt_values.R
5df785b0c3ba49d46cd6fbc4f4a01336 *tests/testthat/test-get_norm_brts.R
89037557c2b4661744b45a17ba4b2194 *tests/testthat/test-get_norm_n.R
051a5ae2c5f6bfc28a6eaf46f4c17b03 *tests/testthat/test-get_phylogeny_nltt_matrix.R
abfdd8b6137e832b41b56c4109c4a6fe *tests/testthat/test-log_transform.R
2a30b63cb3843901d81970f8b99c681e *tests/testthat/test-mcmc_nltt.R
225e3812b897786befc574f805c96dc2 *tests/testthat/test-nLTTDiff.R
45b145edac1182c11d88eed64bfae5b0 *tests/testthat/test-nLTTstat.R
9f518a57d06d2a0531ba174f763bc24e *tests/testthat/test-nLTTstat_exact.R
c0ca5fbf72c6cd4d51b50879c99a406a *tests/testthat/test-nltt_diff.R
8264c4a965fe1efc85e9709027690933 *tests/testthat/test-nltt_diff_exact.R
5cd6a1e558416fedd4707d6b0cae456d *tests/testthat/test-nltt_diff_exact_brts.R
ccfbf9567494e52398455f92e79a6959 *tests/testthat/test-nltt_diff_exact_extinct.R
5bbced9bad3d799e5ea2b5f0f64cbf4c *tests/testthat/test-nltt_diff_exact_norm_brts.R
b2df9e6de4c15e27c634b4d35a46bf64 *tests/testthat/test-nltt_plot.R
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211dabf423813bdd556de4e8095d6dea *tests/testthat/test-stretch_nltt_matrix.R
b5c3e3d24e2978fa437520f8ffb5e95e *tests/testthat/test-style.R
c3fc12a9487a85276baa0d7b0f26ca8a *vignettes/get_nltt_values.Rmd
ecb2353764254399f6b71f6b94e95a81 *vignettes/nltt_diff.Rmd
b4c4e5443584ae181c777e7d8cc279c6 *vignettes/nltts_plot.Rmd
56af887ca68d2cbb8ff8bf9cc71d53a7 *vignettes/stretch_nltt_matrix.Rmd
068430379ec0d84e33bf712fb062034f *vignettes/trees_with_root_edge.Rmd
e7bb4a039efb1e826c34951969f46ade *vignettes/walkthrough.Rmd
