bf6fc8143e49ffb248fee6af3b01ac78 *DESCRIPTION
467266345c95efd23a8dad1b24a5dbdb *NAMESPACE
06398238902e9a2c5ab79bfd15f86719 *R/RcppExports.R
0f92522b6884a39f74cc6eabd5f7e033 *R/calc_rel_contr_node_time.R
bad38fd271d4d2806e1a38176cfa2680 *R/calc_summary_statistics.R
01368b905fa3d2146180fbdd6985e452 *R/count_hidden.R
92cd56bdc81097c65a0a0d7efb7c1fe5 *R/create_equal_alignment.R
c6db7b3966929436293f986880c7a7a3 *R/create_equal_alignment_explicit.R
d776ffe60e52205cf3078b84b2ad641e *R/create_tree_from_brts.R
017e8b1bd87cce7453cceba34521e19d *R/estimate_marginal_models.R
25264ed425831ff269980f8d9baf5f6b *R/infer_phylogeny.R
c0b01b237c31667dd78e80b272302d04 *R/nodeSub.R
f7bb5eea31f5311ebacc2d5497dd3af6 *R/sim_linked.R
532ee47a0a8c628b167648cd54fee831 *R/sim_normal.R
9d06abf88959c90a46c7e8b07803076e *R/sim_normal_explicit.R
afc75eb28fe1f7c8a16efeab883704ba *R/sim_unlinked.R
06ed8dc5ebee0a6f3ac950d819d87552 *R/sim_unlinked_explicit.R
e12f0898f374394bd9c1f4d65f8831da *R/util.R
37d42a89e3ce492d235fe2fff360d158 *README.md
cc4b53a50ae8f433aaae86490b1f0536 *build/vignette.rds
479692a2dc2feaf24c30886a99634d4c *inst/doc/substitution_models.R
a51101a3368895668b1f979c1d6748bb *inst/doc/substitution_models.Rmd
31e048ccffa1a740f2b6e0e3bed03315 *inst/doc/substitution_models.html
dcaf9491bc192a38d66463f12cf1dd2f *inst/doc/workflow.R
0156fd40e0cc841e7dfe95302b5f16c8 *inst/doc/workflow.Rmd
ad41acc4f4a9d97948241e129bf3203d *inst/doc/workflow.html
9446ac9fc736caea9fed352363ee5966 *man/calc_expected_hidden_nodes.Rd
b7e1c4858fe732f30086c579f8c71d61 *man/calc_fraction.Rd
a95870152b1a8515918a3e13362c5cd1 *man/calc_required_node_time.Rd
ad8f5aeb9cf618515c402f69ba3199d3 *man/calc_sum_stats.Rd
f37ef117e13890b80c06480c9b5bb3e7 *man/count_hidden.Rd
5c5ef9ba2607682aae7205a1316973c4 *man/create_balanced_tree.Rd
93113916fabcc74e442b000058ce3139 *man/create_equal_alignment.Rd
a628d35b287c71566d007fe43935f713 *man/create_equal_alignment_explicit.Rd
968a1d1d492ebc08e1a28e1e0db4bc5c *man/create_unbalanced_tree.Rd
5edc06237f13ead458af4a80079c7bc0 *man/estimate_marginal_models.Rd
44f059eabdc355970242ad8f81e20f7e *man/get_p_matrix.Rd
73b9107db33a1b147ff3580f738b29e1 *man/infer_phylogeny.Rd
3bfa6b28534062af248c72154359e52f *man/nodeSub-package.Rd
eff0878e0fc845480d700932b46f2765 *man/reduce_tree.Rd
0d63fca87dacb27dcddbe9637b00f6ac *man/sim_linked.Rd
5ef8866163be63af2d2dd0f530b00638 *man/sim_normal.Rd
dfd63d76a68d213edfdda14986f24fee *man/sim_normal_explicit.Rd
d593f9272815827b04296a08945b845e *man/sim_unlinked.Rd
be88eb66c4c179be142ed9c36a29d99f *man/sim_unlinked_explicit.Rd
69ebc02126c63583118176d270df5a69 *man/slow_matrix.Rd
62f108628677b8aea0695a5394428896 *src/Makevars
305a4533ae0564e530a79b3a1a016c80 *src/RcppExports.cpp
7c51f10e676aaf60d212f8f65f3176b4 *src/getP.cpp
319019ed7bfef5d1c2f4a49168e288a9 *tests/testthat.R
b14288e8be2e6dffe816d784e4c359d9 *tests/testthat/test-calc_fraction.R
3a5989e2ad0e9b92b5368530a6b0eaf2 *tests/testthat/test-count_hidden.R
2b2189779ff216fd39adc18ec64f6d17 *tests/testthat/test-create_equal_alignment.R
526ee35554c11e6011d9230c0defab10 *tests/testthat/test-infer_phylogeny.R
4d9223492808fe1252983a4775422fc8 *tests/testthat/test-marginal.R
e2dee3c68e3186eeaa776cad058662fd *tests/testthat/test-relative_node_time.R
db45340a3c6af45d15242a39375fd441 *tests/testthat/test-sim_linked.R
f1ee2ecc267cd5ff400825d205e8b719 *tests/testthat/test-sim_normal.R
1ada8f6ef0641a90f5902abd9859c88a *tests/testthat/test-sim_normal_explicit.R
6d10f38b6f63257ee7b6ae5bc0f7c031 *tests/testthat/test-sim_unlinked.R
fc6b840a3f9978411713209dc507b58a *tests/testthat/test-sim_unlinked_explicit.R
33ef38d45b7ea5ea62823e793cb2bf7b *tests/testthat/test-substitution.R
25fffed819258ee0a9f44c810c9ad7e9 *tests/testthat/test-sum-stats.R
a51101a3368895668b1f979c1d6748bb *vignettes/substitution_models.Rmd
0156fd40e0cc841e7dfe95302b5f16c8 *vignettes/workflow.Rmd
