Package: nodeSub
Type: Package
Title: Simulate DNA Alignments Using Node Substitutions
Version: 1.2.7
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Description: Simulate DNA sequences for the node substitution model.
    In the node substitution model, substitutions accumulate additionally 
    during a speciation event, providing a potential mechanistic explanation for 
    substitution rate variation. This package provides tools to simulate
    such a process, simulate a reference process with only substitutions along
    the branches, and provides tools to infer phylogenies from alignments. More
    information can be found in Janzen (2021) <doi:10.1093/sysbio/syab085>.
URL: https://github.com/thijsjanzen/nodeSub
BugReports: https://github.com/thijsjanzen/nodeSub
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
LinkingTo: Rcpp
Depends: Rcpp, ape
Imports: phangorn, tibble, DDD, Rmpfr, pbapply, phylobase, geiger,
        babette, beautier, beastier, mauricer, tracerer, rappdirs,
        testit, stringr, lifecycle
Suggests: testthat, TreeSim, dplyr, knitr, rmarkdown, ggplot2,
        magrittr, tidyr, nLTT, RPANDA
NeedsCompilation: yes
Packaged: 2023-09-15 07:10:50 UTC; thijsjanzen
Repository: CRAN
Date/Publication: 2023-09-15 07:50:07 UTC
