Package: nodeSub
Type: Package
Title: Simulate DNA Alignments Using Node Substitutions
Version: 1.2
Author: Thijs Janzen
Maintainer: Thijs Janzen <thijsjanzen@gmail.com>
Description: Simulate DNA sequences for the node substitution model.
    In the node substitution model, substitutions accumulate additionally 
    during a speciation event, providing a potential mechanistic explanation for 
    substitution rate variation. The nodeSub package provides tools to simulate
    such a process, simulate a reference process with only substitutions along
    the branches, and provides tools to infer phylogenies from alignments. More
    information can be found in Janzen (2021) <doi:10.1101/2020.08.19.256891>.
URL: https://github.com/thijsjanzen/nodeSub
BugReports: https://github.com/thijsjanzen/nodeSub
License: GPL-3
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
LinkingTo: Rcpp
Depends: Rcpp
Imports: nLTT, RPANDA, apTreeshape, phangorn, tibble, DDD, Rmpfr,
        assertthat, pbapply, phylobase, rappdirs, stringr, geiger, ape,
        testit, babette, beautier, beastier, mauricer, tracerer
Suggests: phytools, testthat, TreeSim, dplyr, knitr, rmarkdown,
        ggplot2, magrittr, tidyr
NeedsCompilation: yes
Packaged: 2021-09-29 11:16:02 UTC; janzen
Repository: CRAN
Date/Publication: 2021-09-30 08:30:02 UTC
