e0f0dc3be90925b8cca72aa70da59f93 *DESCRIPTION
ebc4336ca51790bbe9deca216cb3fdfa *NAMESPACE
9347a1a0095f0c95bef3c276a84878b3 *R/dual-continuous.R
3f9813feb989f156bbc9952f90e46e79 *R/dual-discrete.R
e3c12b5fa7f8f9012b0d885fc01f00a8 *R/dual-none.R
dc70462425fb6733285977ced4b89c3d *R/nosoiSim.R
9d2103a7207ad85870e1ea3e9d377212 *R/nosoi_sanityChecks-Messages.R
11b698b6922854927ac65e68a781d9a6 *R/nosoi_step1-makeMoves.R
66d815b9c6530674986b3d4576119d95 *R/nosoi_step2-MeetTransmit.R
9b916c1ad18127dd465be46115a03cb4 *R/nosoi_tablesManagment.R
3e746b34303a406b5fdab3e51a9889dd *R/nosoi_utilityFunctions.R
1cd112e53bf52ebd984c134c193aa2e6 *R/output_nosoiSummary.R
6623c0933f348055c6003c9df2cd011c *R/output_treeGenerator.r
cebace50b2ddeadf5602582a05b899ed *R/output_utilityFunctions.R
f0f2c2fb0b432dc6b4248fae28c6e9e2 *R/single-continuous.R
2293aa58da2e2531f0eae7e10f1e9747 *R/single-discrete.R
b50d5f74d63c56210d6701e3385fef8e *R/single-none.R
5fdd44ad54239282aaeed02aabe858ce *build/vignette.rds
7dde0e3a6030a263e8142a2cf61eaec4 *inst/WORDLIST
cdda6b584a80cad3a5f07a6013e7be48 *inst/doc/continuous.R
d4458bce59e0f0e254638945f981800c *inst/doc/continuous.Rmd
2dfbf0bf8cba3d17262cd1f74998df0c *inst/doc/continuous.html
1bb666372f7b50ad52be433d8391a9d3 *inst/doc/discrete.R
79dd8097e76f7eff32482929680d6bf1 *inst/doc/discrete.Rmd
8299944826553b8ce8fb62438d826f7d *inst/doc/discrete.html
d0069715fb8ce789eb4e60aea52d134c *inst/doc/none.R
fc3642eeb27559bd7ad729bc25f2a9da *inst/doc/none.Rmd
83485944cf6067fe2f61daca5d53c538 *inst/doc/none.html
7c691950f55dd54ea18ebca114e8ca85 *inst/doc/nosoi.R
045da3d7bb16f91ca6b13d04b0639f30 *inst/doc/nosoi.Rmd
bc263b4ccbb65f3cf0b6ef27ccd7abdf *inst/doc/nosoi.html
552335e60d54e384f587e1b224fae8aa *inst/doc/output.R
7fc0dc9a70d01d982e7f6de3495b287f *inst/doc/output.Rmd
4e6cb338483a8f463c378b0ad66b4b44 *inst/doc/output.html
9bc68b7bf08d58280418ee9aec7da682 *man/CoreSanityChecks.Rd
351b6648765123722bd2cfc2be9d871e *man/FunctionSanityChecks.Rd
1be509d747992fb3a46781dd027802d5 *man/MatrixSanityChecks.Rd
7726a40aad4c250f4023e35b40813ed9 *man/RasterSanityChecks.Rd
132aaf71301c0fa1a3e1d11d2b33e4a1 *man/add_node_tip.Rd
64642cc183ff9f6350c2b89f0b5e87a3 *man/applyFunctionToHosts.Rd
55c6b92bbfd7d03200d55e8e1b85036d *man/cumulativeInfected.Rd
cbfc06e85366ea80bd4a2ed5889b1722 *man/drawBernouilli.Rd
05abb7bab086bb3b7522e583f38714da *man/dualContinuous.Rd
7f906a646ba599866c902d39c2374217 *man/dualDiscrete.Rd
e6547cc9098336539b145c8c69fb1a1f *man/dualNone.Rd
f0c1f19f8dc4903542c88597fc19c4ef *man/endMessage.Rd
f71fba2a242bb6d4bda8b1d615287e19 *man/figures/logo.png
9849de1a926dcd67dde072876b50769c *man/getCumulative.Rd
eab33e941310c19a9cf9161391442687 *man/getDynamic.Rd
6f88f9bd6f7139810ac21003d141c9bc *man/getExitingMoving.Rd
545cb6db22e467b84ce587fd2177e7ce *man/getHostData.Rd
558292c601a48c5cf7978658a2b2ff9a *man/getPositionInfected.Rd
585efa25b6f59279d0957a3f80067a0b *man/getR0.Rd
07f2f4502ac0b569a5d46de193da770c *man/getTableHosts.Rd
93adf66d2fb037916bfa83c05421b65c *man/getTableState.Rd
a8f482330cb214889ff1c70d326b39ec *man/getTransmissionTree.Rd
bea5931e744df539cd0c24707e81014b *man/get_node.Rd
ad06582545718a89b90213fc519a13f1 *man/get_other_count.Rd
e2a5712ae881865f076be0f75314971a *man/get_position.Rd
387546049da2a78ee1848e546fd94e17 *man/get_state.Rd
e0db69e0375b5b450229d2343bdce560 *man/iniTable.Rd
3ebcd121c800a39c6461c6de2389099b *man/iniTableState.Rd
99b1e3710ac318d54f23086be854ede2 *man/keep.tip.treedata.Rd
171e24ae2b098cf9d7cc60bff43e9e1a *man/keepState.Rd
a657ff77c3fca7a86dfc172330e9eb45 *man/makeMoves.Rd
b78f38a13cb76eb36d83f43aa40cfa6c *man/meetTransmit.Rd
1cf99374f0e207d90e2d4bda45173e77 *man/merge_host_tables.Rd
cee7c8469fe7272e0666610d834b53b6 *man/moveFunction.continuous.Rd
f5972baaad9405f630b188a348db2430 *man/moveFunction.discrete.Rd
be093e592342092c8b298d6de27ed305 *man/moveRotateContinuous.Rd
1a02c498fec0047dab729b7958357630 *man/newLine.Rd
effd07dac3c4e711a8bcb9964d4de5aa *man/newLineState.Rd
1b3ee14545551aa19d8f3939911573b5 *man/nosoiSim.Rd
b697630d3e440e70519c06bc9e74d1ef *man/nosoiSimConstructor.Rd
62b3a89056cd8279b6dfaf86f38aa8da *man/nosoiSimOneConstructor.Rd
020f958ed6aef6a888ce251a6c0da09f *man/nosoiSummary.Rd
733931654a21a39f41cfa43c2585cbf6 *man/numberInfected.Rd
30d93b9e226280e7645670ba68e290f8 *man/numberInfectedBGW.Rd
15a6776090379bb06c6373e71d04b58f *man/numberInfectedStates.Rd
424117fde917249f67167daf287208ed *man/paramConstructor.Rd
2d0ecccacabc019462bd32a1147a4dbe *man/parseFunction.Rd
2a0453efd85920e0fe5b692a27f96b0e *man/progressMessage.Rd
932b782844a9a4220125aca24362481b *man/sampleTransmissionTree.Rd
429d169556d94346a8a885092c6b02ca *man/sampleTransmissionTreeFromExiting.Rd
62c252f5fe9f65b168d907170fe712e8 *man/singleContinuous.Rd
323d7b05e9f4a570305dc9da9f0f8f00 *man/singleDiscrete.Rd
6ef6b7fb6afbd1ed0e30448dd9fea568 *man/singleNone.Rd
2fd03c7de81bf4273509232a44e5a74c *man/updateHostCount.Rd
52e4da52f56a6a8741c7ecbdae70af63 *man/updateTableState.Rd
8a36f5131e15de84283c09b81a9ebddf *man/writeInfected.Rd
77a64eafc86612aedc9414b5d6a5ce06 *tests/testthat.R
076ba7d8a2fd0a71ac3d10ef505ef937 *tests/testthat/testDualContinuous.R
695cb64f16f2d956e2ca2469e96e5e02 *tests/testthat/testDualDiscrete.R
a7e22380e995561e5ffd8a405831dc58 *tests/testthat/testDualNone.R
5936c97bc0a08ca710fe56bcbd0c702e *tests/testthat/testErrors.R
934d19e33656b6380d2b0ce7b3998389 *tests/testthat/testParsing.R
f68cdb01d23a7124dbc4c9b479acbe35 *tests/testthat/testSingleContinuous.R
8249a490053880a64fe0ae6581b0a439 *tests/testthat/testSingleDiscrete.R
e2651d96d3f46a70f575081bd6f5d53a *tests/testthat/testSingleNone.R
1a51d24680b3fcfb2d6cbdd3bc373559 *tests/testthat/testTransmissionTree.R
d4458bce59e0f0e254638945f981800c *vignettes/continuous.Rmd
79dd8097e76f7eff32482929680d6bf1 *vignettes/discrete.Rmd
fc3642eeb27559bd7ad729bc25f2a9da *vignettes/none.Rmd
045da3d7bb16f91ca6b13d04b0639f30 *vignettes/nosoi.Rmd
7fc0dc9a70d01d982e7f6de3495b287f *vignettes/output.Rmd
