524c7aaee92273820c014b7a45429da8 *DESCRIPTION
e7b0ea0520196c11b7b56606108109d8 *LICENSE
ed58baac279109052911281dc3cd3458 *NAMESPACE
e7ccc68f7c6a59eff143ead6493c5efa *R/addAnimalsWithNoRelative.R
99769c26121931772c2ccc66f768136d *R/addBackSecondParents.R
6817016f3ac475e0859a1ab5c067790f *R/addErrTxt.R
eaa8162e5ab76e6e3f9b352f62cf5ed8 *R/addGenotype.R
5bb29d4fe27ac899da6ced032c22dcf0 *R/addGroupOfUnusedAnimals.R
7cac7544d1dcc4f35b3fef031c3555a0 *R/addIdRecords.R
fb324adc24cb0b265341a034893a4ff3 *R/addParents.R
4251c07ff1f2389d9d27f53a938c4161 *R/addSexAndAgeToGroup.R
f8f8734467e994f94fda7354429b9665 *R/addUIds.R
aec438a0b9ddfdd924b817dbdd019320 *R/agePyramidPlot.R
316e8d7f777502a44ad39537f52522a5 *R/allTrueNoNA.R
2bd13e619430fad72e8c0f2ee343818e *R/alleleFreq.R
95affb329fb2b86b0e78c2476fb21bd7 *R/assignAlleles.R
b9d18c3c575f041fa5e3ef84de231db5 *R/calcA.R
b10c218be61e442a8fc4138a91a25d4d *R/calcAge.R
e513f5f9a80d1f89848b33255a104fd3 *R/calcFE.R
ece7f4726867018200e529656f195a69 *R/calcFEFG.R
a8a41ad6fea34ad82d6c927e91c1f03b *R/calcFG.R
17a8b0adbe294b02d242b70b0f1934f2 *R/calcGU.R
30157cf4cc12e2c98f198f99dc535f09 *R/calcRetention.R
92401428d02b7780df9b85d4c6797438 *R/calculateSexRatio.R
57f29bbbafaee130a2e52787e0420c6e *R/checkChangedColAndErrorLst.R
7f1ee8666045f7facdd64a4057db782a *R/checkChangedColsLst.R
b701a612d2293f7cc1960e0123958269 *R/checkErrorLst.R
364b2498623651b24083fc565c0a2c09 *R/checkGenotypeFile.R
3bc950bc766230b46789d106d80b9f78 *R/checkParentAge.R
c81416a3f76da814eeb09cff46abddfb *R/checkRequiredCols.R
d55331832a6299754de5c5086e6e5817 *R/chooseAlleles.R
0b8ef2799ba260ef451c5e63d33fc5ae *R/chooseAllelesChar.R
6d7374c278b844f557efc7d10a86e77e *R/chooseDate.R
324b4f5994ca9879ec22715a18b9d11e *R/colChange.R
1b2ceeb98512c3f8325ff02cab4ceb67 *R/convertAncestry.R
183df742dbe64f43ad0ab918f1a46acf *R/convertDate.R
ac487087859ae83f342f6b30ddbcb993 *R/convertRelationships.R
0b5dce364a50df8f729b684be970f3d5 *R/convertSexCodes.R
056344c8d530386e3126bd820ac58b3f *R/convertStatusCodes.R
fd302a96b7bab55a4bbca3198a226d00 *R/correctParentSex.R
4799023227853c27c8b091b5a8007382 *R/countFirstOrder.R
947c05bac138cd8f7703528765386c54 *R/countLoops.R
4f8ac2cb4bffde700b97fd27af98479a *R/createExampleFiles.R
66bf6b173e8907012a1d10b3194b1fdb *R/createPedOne.R
5a09202d7f8f6dd7b8c22dcd13528435 *R/createPedSix.R
d81f1c2dad75a8f005116f95e519377a *R/createPedTree.R
d2fb7a1ce0c158320d1b070e935628de *R/create_wkbk.R
4d288905ea66bf3d52f5e4af649c1f0f *R/data.R
a68ffd7ba1804c710f0142c073340858 *R/dataframe2string.R
a0bf2dbed8e30b634769a5488ef81644 *R/fillBins.R
16d7a8f6eb0e8bce6540d0e0c53f942f *R/fillGroupMembers.R
623512bb8f5c26a2f2c56c1938a21c2c *R/fillGroupMembersWithSexRatio.R
3575b346a8044d47ab9780cf9b615af3 *R/filterAge.R
4a7b5c904d14abb75519283946fcee53 *R/filterKinDuplicates.R
b49a5deb92e559407df221714b4fdbb8 *R/filterKinMatrix.R
f7e8b89ed9394f1f1474996d35bcbc26 *R/filterPairs.R
5cffac063da7fa5261e2b386e46ef8cb *R/filterReport.R
f9dc66f2c22562fc3b5d62b44fbee0a8 *R/filterThreshold.R
3187eda76638ba04ad3d0da822643126 *R/findGeneration.R
349a447a285da6158ab0c74fb75313d4 *R/findLoops.R
29b1064d3f4258c3f32d33e2e60dbf94 *R/findOffspring.R
42cbc510d1c32741a9b4df3fe02e0411 *R/findPedigreeNumber.R
4f35e8881ed847c3c4aaff2fd7b77407 *R/fixColumnNames.R
9aca9e3bd137b8e677dfd8490cdb0c25 *R/fixGenotypeCols.R
ab28e03ff1824a24f3b1968811b8cce4 *R/geneDrop.R
297acac37d9f00fe8a069bcd37283f96 *R/getAncestors.R
7c8ca05469b8cfbf438dc872cdd4615e *R/getAnimalsWithHighKinship.R
e7856655be0522ac6d90f99f1efd7a53 *R/getChangedColsTab.R
3a10488d5c1710542f8b91cd13e640af *R/getConfigFileName.R
7faadb0f9ad722036ef2bf1d955f23b4 *R/getCurrentAge.R
02eca482f272f590423049dd8a9641fe *R/getDateColNames.R
8caf9e6cb6e2d36e2cb80f085cd417a8 *R/getDateErrorsAndConvertDatesInPed.R
ed9dee8c80f2a1b36570d7caf6b1db0e *R/getDatedFileName.R
432c75c432755770b0b797fe0d4c383e *R/getDemographics.R
6836e297a12a4dfae70f0503bbb9cd3a *R/getEmptyErrorLst.R
838e40f29764d04e0880844e3775aa11 *R/getErrorTab.R
ac41751db96116309f51b95306cd587b *R/getFocalAnimalPed.R
c47c19c25ef1c97eaa920809fd81d2b1 *R/getGVGenotype.R
6d6f9d5d9231c7a351c56446fbdb42a4 *R/getGVPopulation.R
1fe0c893769e1a9a9c8e0e92d55d370c *R/getGenoDefinedParentGenotypes.R
5a46ff204964b2e95736e60c22b0aff0 *R/getGenotypes.R
29b362edc447371054da90c39c71dbde *R/getIdsWithOneParent.R
82a4c49d290806bff0e1faae92e1bd8f *R/getIncludeColumns.R
2c11745c4ff01ec94d31a4486f90ebb8 *R/getIndianOriginStatus.R
1d34db083ff5d1237468e261b27e9fbf *R/getLkDirectAncestors.R
752b881a012b5fb19d74030d04eeb0df *R/getLkDirectRelatives.R
5ffe1c94f51769cd57ba033b76747f76 *R/getLogo.R
ee00bb263656f106a8aa3dd280ec8731 *R/getMaxAx.R
0941e34b79dd58fa9040acde7441f26a *R/getMinParentAge.R
f01f53bb62cb495978154a18cf94ddb9 *R/getOffspring.R
88de79565f3f8e0ed50b60406aabbf52 *R/getParamDef.R
122ec602273dfd08871660b4b781773c *R/getParents.R
bad07cd25f2a546797cdf30301647f8a *R/getPedMaxAge.R
fcf959ed3365a4501bd51204128b47e0 *R/getPedigree.R
d59b6441f9e54d70777ddd7fd94820a0 *R/getPossibleCols.R
373606f5105374f3004827bcd7cc306d *R/getPotentialSires.R
c5ef29123df3ded84dc0f8758ae03e76 *R/getProbandPedigree.R
6fb5aba609e64cf1a1e47f87ac137071 *R/getProductionStatus.R
b9fbd4e93008868377ce07ccea414ac1 *R/getProportionLow.R
dc60a7c5c9f4941ca4523c0e5086b939 *R/getPyramidAgeDist.R
21bc181537c6e8b8cf114e7fb8ce9233 *R/getPyramidPlot.R
059776e09d0e72f036327069d5ac4022 *R/getRecordStatusIndex.R
c8ad60fbabf8c36689a7173f50e9245b *R/getRequiredCols.R
27d67c2894f566c86229b817717352ab *R/getSexRatioWithAdditions.R
305c1ddc95b6366f140db890ce13484d *R/getSiteInfo.R
5d7423c9388f714e97a6a3a98e8974d9 *R/getTokenList.R
afa934d04a77bbca8ad2498155d8fb40 *R/getVersion.R
133c41b874e0d7c624d4e8be85ddf81c *R/get_and_or_list.R
9e04c5269ae682320a4a6fc0ab3d2338 *R/get_elapsed_time_str.R
b61e1272f50a4bfd1cdb3088e9ba91cc *R/groupAddAssign.R
890e426ba4af5fb4e55664e01055d45a *R/groupMembersReturn.R
9c0c6addea9c1ed6a58a24d71b55b739 *R/hasBothParents.R
4f265be5b28a64a48e6eeb21f210f0c2 *R/hasGenotype.R
9a2433f53b08ed45f63f7c7cf9d18297 *R/headerDisplayNames.R
5000ad7fe21a5768ebfd3a3df106c689 *R/initializeHaremGroups.R
e5ef8d4b6b3c31d75a711ca78cc34ca5 *R/insertChangedColsTab.R
207fd2ac9400c35546a055390f751b7e *R/insertErrorTab.R
9f229f8988c41a11c8bbeb5fb6caec34 *R/insertSeparators.R
f33a323eed49e243d5c4b1115e9b96e2 *R/isEmpty.R
b41462ac1b246f5a1c2be877813e3077 *R/is_valid_date_str.R
a5658c210b460af5a7d230c2cdc361a8 *R/kinMatrix2LongForm.R
060fa5e14a3415f02f3f2af6304ae68d *R/kinship.R
8b938a368c3aa45c0214a1b193f02f4a *R/makeAvailable.R
3a52737b716be280018bdd6b0183b3e0 *R/makeCEPH.R
ddd71df9fa0a7bda8d1c8d79b51526c5 *R/makeExamplePedigreeFile.R
769c1277a8d72b0d68687e5b07b67bf7 *R/makeFatalErrorTab.R
d66a124b72bc2aaab9b228846ad24f05 *R/makeGroupMembers.R
9fc08aa5f0ef1c9c8d7d3f04e0b7610d *R/makeGrpNum.R
ec66531fe44c628840f492cdc6f8f799 *R/makeRelationsClassesTable.R
c4336f77d4538e416c007d35dd4e9549 *R/makeRoundUp.R
94ae623786fdbd7586731eb8b0c8638b *R/makesLoop.R
b34fe69ec690c09c78efb6cba783f68e *R/mapIdsToObfuscated.R
2f77dc7268232d2e640cf999f084d08c *R/meanKinship.R
315018bfd43e9939bd1e4c35f1e693af *R/nprcgenekeeper.R
d69f4e16fe24b3bc9751e0e6a1cd936c *R/obfuscateDate.R
60ccb456b4b5518ddfe7f670ac22c09c *R/obfuscateId.R
1bc6923c823e1eff46371e8e4de7da65 *R/obfuscatePed.R
474dbe88b690f062c0e41ae7c32ca5c9 *R/offspringCounts.R
fb4af1826f1101d4f10c2f6b917249ab *R/orderReport.R
4685d52953579ed342b3e3876835f807 *R/print.summary.nprcgenekeeprErr.R
1ab82c976d1a0d8a7af36d3767ee1c10 *R/qcStudbook.R
ecd8151c2ec24a2ffcc57ad633f55065 *R/rankSubjects.R
2034081a0344e48a1e5bcb531114bb01 *R/rbindFill.R
6bc89307b3e61f5bb00253bf268dc76a *R/readExcelPOSIXToCharacter.R
2b91f1099a647dd5cd0fbadc9721512c *R/removeDuplicates.R
63e6a66dfc91d4bd22f79b1bb26e66e5 *R/removeEarlyDates.R
d6388f2faa6a4b15acf652fdb24b2228 *R/removeGroupIfNoAvailableAnimals.R
99e70860c6e0dec47a5ddd5e9b641282 *R/removePotentialSires.R
4b88971af80d4df14e52b92ea281ab58 *R/removeSelectedAnimalFromAvailableAnimals.R
27cb1435e104de655b42a7ccf84cacfd *R/removeUninformativeFounders.R
bf4957e85c0d7592cbb4660f60252f82 *R/removeUnknownAnimals.R
11f3018c0d0928d2b813cfd1355fccd6 *R/reportGV.R
1aff787020ec2b98b06db7b0c88e9a82 *R/resetGroup.R
da123a8291e7dc1dec0c80ad22fdbd08 *R/runGeneKeepR.R
8f84eee0ffe7ddedd9f8d23589dec195 *R/saveDataframesAsFiles.R
213b84720b99b5f427cf71b885f2c77b *R/setExit.R
814f289ca9d2f307762ea3c22725b0f4 *R/setPopulation.R
53681bf8189879fda3375ba425574f82 *R/set_seed.R
ae1fd1b95798ca8643692d157ecf38be *R/str_detect_fixed_all.R
ac34ae74c0fd268f302bc76bb8d503d6 *R/summary.nprcgenekeeprErr.R
979b6035d206d8517f13918c29755166 *R/toCharacter.R
19431ee28eefa472c13933b4c5349112 *R/trimPedigree.R
62accbb3a32f279916427df29b55b00a *R/unknown2NA.R
053a544969f6f80524203f3ef0a41f25 *R/withinIntegerRange.R
022be6a05c0f7d3caaf60d8587eeb369 *README.md
d1cff35d482950b452166668673defe2 *build/vignette.rds
d0ee3d96d874e2f453119a909f9cefc2 *data/exampleNprcgenekeeprConfig.RData
e2bdcc1111265a822a9dcbe510fd26b2 *data/examplePedigree.RData
2e8104a03748fa6fef1850bb8d55c3f9 *data/finalRpt.RData
6bb0a7f55c5a3325dace7b2cdf5f1772 *data/focalAnimals.RData
00f78118fdc8c41594cf52000939aa66 *data/lacy1989Ped.RData
59f27e7fa37fd971c993a4d4ad38ba2a *data/lacy1989PedAlleles.RData
ae0147ea8417d19a1fe5603ddd451c89 *data/ped1Alleles.RData
41cc451779d268c8e775e3d9b1c1fb09 *data/pedDuplicateIds.RData
8f1d5636e5b7f8e110e0e7875eea17e4 *data/pedFemaleSireMaleDam.RData
2301f7663171571860a6f99b643b4c6b *data/pedGood.RData
9a7c2200b8f28490443f0b8d270cb7e1 *data/pedInvalidDates.RData
24931aaf731f9207de1d150072568c52 *data/pedMissingBirth.RData
e7ac77370f36508523f2ae68ba83c0fb *data/pedOne.RData
b437b240f1923ee3455a62f61bb621f5 *data/pedSameMaleIsSireAndDam.RData
574ac74fb4ef3dcbf3c9a7b2fe4b79c9 *data/pedSix.RData
a6f6f54cca316fa743512797ab0ef305 *data/pedWithGenotype.RData
865dd9bc7a0a3d846d3e82036d4932b5 *data/pedWithGenotypeReport.RData
e3a52698259b98ded58e0b554a13905c *data/qcBreeders.RData
d2bb6ebe962b04de3434b464143625b3 *data/qcPed.RData
11102772c7d4604c8c3dadae3b9e142e *data/qcPedGvReport.RData
11601df752990989236cab03d5ec4f85 *data/rhesusGenotypes.RData
96d84fcb278cc2d2adf2813ad94d641a *data/rhesusPedigree.RData
21fe83ed4b0be8c307864698630272bb *data/smallPed.RData
0b5825939c169589293cb4c81dc51eef *data/smallPedTree.RData
ac42820ea73172f4c7b1a490c98496ab *inst/_pkgdown.yml
33c679c29b388350fae32aa36bde0fa6 *inst/application/global.R
a56f26cde8014389fac5bf8e4464f6fc *inst/application/server.R
3909a5f32720bd9155659afb853517b7 *inst/application/ui.R
9734179659aa142b06b1d235d13a4983 *inst/application/uitpBreedingGroupFormation.R
5aa8c095540d8a9320ef1813e261db4d *inst/application/uitpGeneticValueAnalysis.R
267620e997a43bbc1fdbf548b97f72f3 *inst/application/uitpGvAndBgDesc.R
b748f361c94062e2b3fc274722f8ce75 *inst/application/uitpInput.R
00a259c355ce214caab3808ee9241cf5 *inst/application/uitpOripReporting.R
cc53f3434a8d614b5f916801221c8d6d *inst/application/uitpPedigreeBrowser.R
cfc1c33cd0d600dbaad1c8700bf2950e *inst/application/uitpPyramidPlot.R
bb702e3a8693246a19f3aadb97c5e9fa *inst/application/uitpSummaryStatistics.R
70708be3b1582b3de3daa13d8947d7d8 *inst/application/www/GeneDrop.png
92b1ce4e0bfc2ef1f8d2d87f6a440294 *inst/application/www/app_style.js
b660e794026a8c947681d504ed8a2749 *inst/application/www/nprcgenekeepr_2_color_logo.jpg
b698d06d0a459a63f3fd0d34f97e4fdd *inst/application/www/under_construction.jpg
cabc00f13501e064ef246fb671ad2fa2 *inst/doc/a2interactive.Rmd
cdc8c0f794c0740c049437a7d930afc2 *inst/doc/a2interactive.html
ee6066845734eaf06404a975484b71ae *inst/doc/a3manual.R
3117d0d02b1a6e53339adb214bec9fa8 *inst/doc/a3manual.Rmd
a71ec728660927818f0154eb03e11138 *inst/doc/a3manual.html
4b73eb641175b24140225b50974d32e2 *inst/doc/a4Development_Plans.R
aaf4e38e542b612bc86df528243d5c81 *inst/doc/a4Development_Plans.Rmd
cc3a41f3e4d59b47dc65e451ca2ca494 *inst/doc/a4Development_Plans.html
e9cbbd4c4f836566a89ef7188d155b5b *inst/extdata/ExamplePedigree.csv
7db15878bcafaccd74e0b2cccee4d1aa *inst/extdata/emptyFocalAnimals.csv
a707f6f4fccdfb44e08a64f0ab912040 *inst/extdata/example_nprcgenekeepr_config
50e720aff2fd28e51d3067a6889479f9 *inst/extdata/focalAnimals.csv
27d6b12423682b4659b021ae490c805c *inst/extdata/focalAnimalsShortList.csv
03afbf62352b451566cb7712258fb241 *inst/extdata/genetic_value.html
abd55c4b7bf556e964aa5f0ece758bc7 *inst/extdata/group_formation.html
99e37486c70df8fbaaa349e7a0f6b179 *inst/extdata/gvAndBgDesc.html
730b13cb0133839e92655442f5632e24 *inst/extdata/input_format.html
b9564ddd59a06782310989e8f33db55e *inst/extdata/jsslogo.jpg
68b329da9893e34099c7d8ad5cb9c940 *inst/extdata/no_animals.csv
0d4d24985be1b29c98e66e8c567837cd *inst/extdata/obfuscated_rhesus_mhc_breeder_genotypes.csv
30557133103fa6382868ae0b1428712b *inst/extdata/obfuscated_rhesus_mhc_ped.csv
ee17575d86a50d17f083a436271ee8f4 *inst/extdata/pedFive.csv
cbe531fbb7952e05fbfa3b279e84dd5d *inst/extdata/pedFour.csv
2521be01118863c87afc47c8bbfa28ae *inst/extdata/pedOne.csv
7dbf90da241624351dd57f0ebbcc0741 *inst/extdata/pedSix.csv
e319be983921e4f437662c017facb9f9 *inst/extdata/pedThree.csv
c4b632c1f0f71ab006aa46f55665191a *inst/extdata/pedTwo.csv
d2439afeb7fd27236d254de760b6f26a *inst/extdata/pedigree_browser.html
3c8eb0a5ce0c94dbd386e4b06751ff75 *inst/extdata/population_genetics_terms.html
299b2cd14ece13ec983ab5b44c993ab0 *inst/extdata/pyramidPlot.html
4bcabaa03337b3e530e3c68558895ec3 *inst/extdata/summary_stats.html
82e6b888f9dd1d395cbfce1599a9200a *inst/testdata/qcPed.csv
3e82bee3465d559cdec27e1c9a6b83fe *inst/testdata/qcPed.txt
40ea3a6fca526fbfed73422555817d90 *inst/testdata/qcPed.xlsx
1a5ffc2ff47d747abe9d4a631eb3041c *man/addAnimalsWithNoRelative.Rd
04da936d912a42252e7c3d532348c2d6 *man/addBackSecondParents.Rd
11f7f6fc4392c801f99cf7687e791947 *man/addErrTxt.Rd
427094f3b49ae51a53254904c21de1a5 *man/addGenotype.Rd
41d07318bc0b819bb8103953f9b21dff *man/addGroupOfUnusedAnimals.Rd
290c90ccc315f589693d521f2109934b *man/addIdRecords.Rd
cf63421d9acc054ab8c485aa9e7dd35e *man/addParents.Rd
4b0e4302e8702d9a5740bf50c994a47c *man/addSexAndAgeToGroup.Rd
09c0f3cb97e86aeea36dc3d7b84b9cf7 *man/addUIds.Rd
ac543901bd844fcf7cd6efc5fc4d4009 *man/agePyramidPlot.Rd
2218e90a856bab14d378b2c8ccaeb193 *man/allTrueNoNA.Rd
02324aec440b224fffb3dbc93dc37b25 *man/alleleFreq.Rd
812bc71d8936ee679d142b7b312e8d4a *man/assignAlleles.Rd
4daedbc4bac6ae88986115b77e05d482 *man/calcA.Rd
754f97bce4171bdd772d0be37d42ad75 *man/calcAge.Rd
666a6fd114d9054c0b5db43a2d6f2c3c *man/calcFE.Rd
1c8a34fce8b5532908beda40073c3ec3 *man/calcFEFG.Rd
12d134eb4b89ad51d25ad7b54f22509b *man/calcFG.Rd
fe612043515b5566c22ab7a749242ff2 *man/calcGU.Rd
aede7e25bedb608fa81858c80ea1733d *man/calcRetention.Rd
4ef86680f9a22cc43755ea4dab1ce38a *man/calculateSexRatio.Rd
2b0bc54e4341ad2ba55b0188a72cd507 *man/checkChangedColAndErrorLst.Rd
58d18103eec5bf32c2c5ec162de4c15f *man/checkChangedColsLst.Rd
b2258043e1bfcc12b6cb258f2c112467 *man/checkErrorLst.Rd
fba583646436808e6f48aac590a188bf *man/checkGenotypeFile.Rd
ff826ef4c5a49d90ddd334562ca3df3e *man/checkParentAge.Rd
e492ede4149b417d8a0d5437368f94da *man/checkRequiredCols.Rd
6e42c8b92339275412b626207c570b95 *man/chooseAlleles.Rd
2231a40677156954b531a8e5c14aadc6 *man/chooseAllelesChar.Rd
75d064ffd0fbc1bea47d061dc213f3d6 *man/chooseDate.Rd
3b56d706f175ae30b52348a0b0139643 *man/colChange.Rd
fdb61a0bf0e0e1408c64a1a58b169fcd *man/convertAncestry.Rd
b37cebcaf1d28df5fc5163d0a6cfa1eb *man/convertDate.Rd
a914bc4964ef3879e2b65997841a799b *man/convertRelationships.Rd
fb575293dbca9740943c62cc98e3a79d *man/convertSexCodes.Rd
9a46064b5bf93cf86c5ff1a955ef4185 *man/convertStatusCodes.Rd
d7cf66eab5c58168e37c671d841c104b *man/correctParentSex.Rd
f46f183cae4d0f87a6ce3edb1002ed3f *man/countFirstOrder.Rd
0b4ee63a5cd6c53d7cbcf7c0c8bb1106 *man/countLoops.Rd
87a33534ce71e9943aaecda449bf9a48 *man/createExampleFiles.Rd
c09a8d18904e893a786591a67bd78977 *man/createPedOne.Rd
c41248d1ba0808bb082afe93b526b5ec *man/createPedSix.Rd
0483e017202bed2ba75280567dec92e3 *man/createPedTree.Rd
4448e75692dfd337d77d0172851d3df3 *man/create_wkbk.Rd
a9c4ad5818a6055bf3c080e1b82dbddd *man/dataframe2string.Rd
16949e7906e39ec94673dce4e9a23030 *man/exampleNprcgenekeeprConfig.Rd
741aa4ac72b4f492255351396f730afe *man/examplePedigree.Rd
ab61b27edce5c7373792312f32ad73c1 *man/fillBins.Rd
d90e0cca867963d7a2b7fc19a8defeb0 *man/fillGroupMembers.Rd
756059c8908950bf49300a7c99ed0fe2 *man/fillGroupMembersWithSexRatio.Rd
ec96889039fc7fedf9d8f197828bf8aa *man/filterAge.Rd
a392dca452d2fd2c4932c2f4316ed857 *man/filterKinMatrix.Rd
a33289c0e48aac0e266e694d3241713a *man/filterPairs.Rd
c358c782a8696ec1599b6703b0672fab *man/filterReport.Rd
53b2ccf95ac5baf4f221bc7a6a0bae42 *man/filterThreshold.Rd
2439b37c670c3a76d83c9353f3a12ffc *man/finalRpt.Rd
852711b2254476ef9854aab855201310 *man/findGeneration.Rd
8bf2257bac5cca33eea37c75701f2c40 *man/findLoops.Rd
c157e6c5b24d3b1c08242e557188299c *man/findOffspring.Rd
65051f35da24968964a29846f94e2751 *man/findPedigreeNumber.Rd
1e591c16446598908177a4892a53ffc1 *man/fixColumnNames.Rd
9fd92078d4aa20d06a65fa9dfe3a6cde *man/fixGenotypeCols.Rd
4dd0a6aa718fec447953b174e4ce9b5d *man/focalAnimals.Rd
0d7aab34abf30430a191bcc602ebf735 *man/geneDrop.Rd
7b8d40ae582149b26f529bdf3b76adf0 *man/getAncestors.Rd
dafa6d9406013271cd30a0a9502a7415 *man/getAnimalsWithHighKinship.Rd
d9eb88926d8d365e81fe74bb7779f4f9 *man/getChangedColsTab.Rd
f7faffe9ff917ed3eeee20c0b2cb827e *man/getConfigFileName.Rd
6b418a54c78b660d62d7b5675cea1458 *man/getCurrentAge.Rd
a2ce78ec66036b7ac0142402ef2286f0 *man/getDateColNames.Rd
e888a7bbcdaf7146df625bdfe5709d19 *man/getDateErrorsAndConvertDatesInPed.Rd
1dd5a4b9e728504f5112d1e97504ef7a *man/getDatedFilename.Rd
d8d13be3988659f7cb8ebb354f182b32 *man/getDemographics.Rd
39b20b65de45aef67744d656dd726de5 *man/getEmptyErrorLst.Rd
ed2b97969ff915651268891a785490fc *man/getErrorTab.Rd
4cd6ca6e142a06af27eddb1896a7f5d1 *man/getFocalAnimalPed.Rd
261dda8a12a70d47e5a0524a4402a365 *man/getGVGenotype.Rd
3eec2324b5c8213e7e0575df8bc2b3f0 *man/getGVPopulation.Rd
4ee7499806a21321ca6e627451f441f0 *man/getGenoDefinedParentGenotypes.Rd
0f09bcc297ac2047be27d468340df8c5 *man/getGenotypes.Rd
deb9ff51ef79b358c398db40374ac526 *man/getIdsWithOneParent.Rd
74e51b03520458dc24e981e1aae2fdde *man/getIncludeColumns.Rd
a0e5da402260dc164120e9f75101d859 *man/getIndianOriginStatus.Rd
368bd496d53cc04a4946e22572ec794a *man/getLkDirectAncestors.Rd
1a5ff34316fc0a45d7f7addb46b8b2af *man/getLkDirectRelatives.Rd
0285edced8a5358b019c2e3c90441860 *man/getLogo.Rd
ae95d800bd059f83e68b329e583b087a *man/getMaxAx.Rd
3b47a23804db06b833a743c3d84c067c *man/getMinParentAge.Rd
f4795684cbb5f995688b5b5281dc687e *man/getOffspring.Rd
9328f08fbf16df08f36ca7c439b65373 *man/getParamDef.Rd
c9872df96a58340b3b4b485954de366a *man/getParents.Rd
01d3d6b68d0142ce21dc8f78348cbc14 *man/getPedMaxAge.Rd
c7c83a3f3381bfad480e5262fe289fe6 *man/getPedigree.Rd
813189d40ff8e02e9ff98b7b919b5e3b *man/getPossibleCols.Rd
9d7f5fdcff45369ff1f8c57fa6ad2be8 *man/getPotentialSires.Rd
cd194ab636f548e79c51f86f481d6cdc *man/getProbandPedigree.Rd
b4058ab76d95574695b1ad488191a48c *man/getProductionStatus.Rd
d0835431d8423c68c63535afee521087 *man/getProportionLow.Rd
bbab40d5966e2a06b9c1d0290317adb4 *man/getPyramidAgeDist.Rd
1bd4bd765674d52465c4adda8fee3a1b *man/getPyramidPlot.Rd
98f92a9e3e90780cad1b4abc9f5c2b1b *man/getRecordStatusIndex.Rd
0fb0f2f03ec50987a99f768bee946770 *man/getRequiredCols.Rd
28c9750e92a49e311c945bf2bac9bf7d *man/getSexRatioWithAdditions.Rd
c480c8439aa5994687a68a53a6e593c7 *man/getSiteInfo.Rd
76af510b85d9fb4e0b91ef0eaea37537 *man/getTokenList.Rd
2d49832564dabbac44e82cdb48d33910 *man/getVersion.Rd
4f0e1c18098277fe5c4273fabfadda56 *man/get_and_or_list.Rd
5af43e8d036dcf84cce6ccff3a8652da *man/get_elapsed_time_str.Rd
106f6d5c8cc25242f9c6f36fd3562e9c *man/groupAddAssign.Rd
be9c440ff375b49d5f3a0a72fc1a535d *man/groupMembersReturn.Rd
26a5bd41733ba7f72750f1bf7ba4ae8f *man/hasBothParents.Rd
e4ee36fa50bbfc4e69f3cdf726b54ef1 *man/hasGenotype.Rd
253158c250ce4735204957be91e39f85 *man/headerDisplayNames.Rd
ec00c6f3a0c85c26e062bd9000aa7639 *man/initializeHaremGroups.Rd
1dbbb2fccc2b4e87cd7bdfef06362015 *man/insertChangedColsTab.Rd
b4ebf3816eabeb8cb42065f0cbe984c9 *man/insertErrorTab.Rd
7d31cca696e80403444cb70cccb103e8 *man/insertSeparators.Rd
7a8ffea26b1e4eeb3e7e11a6c498cdcb *man/isEmpty.Rd
a86228e1cca983fdecb3221bb79fe17c *man/is_valid_date_str.Rd
da88d97b766869f2b42735d81dbb4a3c *man/kinMatrix2LongForm.Rd
304dafed7c8baef7a6834516fcb6577a *man/kinship.Rd
f21f165f4616fb2facec1840186ae04c *man/lacy1989Ped.Rd
fca915df47dc480cfff79730b9b6365a *man/lacy1989PedAlleles.Rd
d43bb7e6234db21ca6e23405d1bee9f8 *man/makeAvailable.Rd
b188fdbcb7f461e9c56cb769aaaa6412 *man/makeCEPH.Rd
d241664e69b5e900c71b4f80d33c8a16 *man/makeExamplePedigreeFile.Rd
207d95429db47b2d102be62e8c187d9c *man/makeGroupMembers.Rd
b1906cd4d5ff8922d9fd1827c63cad84 *man/makeGrpNum.Rd
80aab955f421dc320b8e01348699dc06 *man/makeRelationClassesTable.Rd
a191036539a3bb29888b2c01d0ed5e8d *man/makeRoundUp.Rd
3bb640d5d9f7a579e28da3d30aacdb95 *man/makesLoop.Rd
47a4643d5e1176d3267373379f4236fd *man/mapIdsToObfuscated.Rd
79fe09235a13c982899ac8d243de9e29 *man/meanKinship.Rd
ab59fa978813a363d4e5a4b7e9f4be66 *man/nprcgenekeepr.Rd
c2342bdfc821e39a70913a618d93e5e0 *man/obfuscateDate.Rd
64db9d334db8b97ef363ae5e539431d9 *man/obfuscateId.Rd
75356aefb059df8b688afccddc52b257 *man/obfuscatePed.Rd
35535de2bccd5273c22368e432929cb9 *man/offspringCounts.Rd
9c5dd008be162f46023d9b9c23bddaa6 *man/orderReport.Rd
cacd831ec368063d4f057d27378efaeb *man/ped1Alleles.Rd
034c414b31eb5ab0cc155b0396de95b0 *man/pedDuplicateIds.Rd
f79c1385cd4be330914199e3f0632144 *man/pedFemaleSireMaleDam.Rd
0713f74eed97b459eb3fefb799edf61b *man/pedGood.Rd
9707e72bf95ccdcfc7ac5dd150c79175 *man/pedInvalidDates.Rd
6a94d0e0d5fa86c1de1969398a428153 *man/pedMissingBirth.Rd
fe0c4af10dfddc02ffe7f3a2be479668 *man/pedOne.Rd
b012feb292cc3db37b1c6742b7d761c1 *man/pedSameMaleIsSireAndDam.Rd
37b2c0ed8bad709c59a4f52c59d53c72 *man/pedSix.Rd
18c500b55b03c37572751bc937ef2b09 *man/pedWithGenotype.Rd
da6a3e6b5c09d0cb351c4e05190be83a *man/pedWithGenotypeReport.Rd
40bed73f1941acbb5162d79c8b4ecbd0 *man/print.Rd
933539d9bf652ee96624673127836153 *man/qcBreeders.Rd
dcfd407bf4f11ef82668a4de509ca903 *man/qcPed.Rd
42bf02f38b8095efd882c83579ab6247 *man/qcPedGvReport.Rd
81147cc598b2f654a5c0de670e82db73 *man/qcStudbook.Rd
b45945c86e1a326db1a01498e3d98783 *man/rankSubjects.Rd
e16cac2fcf4a82369bf99cbe874da986 *man/rbindFill.Rd
580b161d57c3324178bacf33a3628ff2 *man/readExcelPOSIXToCharacter.Rd
f80f7eb8e4e2dd173d39a96b7d3c9023 *man/removeDuplicates.Rd
8e610f8b0bb9d04f8fb9189688fed7cc *man/removeEarlyDates.Rd
b802cbab48db432b5ba270a3f37f9e82 *man/removeGroupIfNoAvailableAnimals.Rd
1309a5914b3b1328a3e3abeb75e23445 *man/removePotentialSires.Rd
59d23d7df247ae7e8a4204c01d11b75e *man/removeSelectedAnimalFromAvailableAnimals.Rd
19e64d27b6ff326f15954d911b632c07 *man/removeUninformativeFounders.Rd
375492913eb471ffc6269b57f460ce5e *man/removeUnknownAnimals.Rd
d2d7dc85f75de7cf2c18af7fb218623d *man/reportGV.Rd
d624527b516b672c4baf02dd3dc201f4 *man/resetGroup.Rd
93fdb7b84fdbd6fb51a664a4c8a6c2f5 *man/rhesusGenotypes.Rd
926d0a61cfbe78dc5da5c7c5b99a3f42 *man/rhesusPedigree.Rd
f4d9925150418d5f50ab3ab0598dcffc *man/runGeneKeepR.Rd
f3604eafffaffba743a77aa3491da214 *man/saveDataframesAsFiles.Rd
56f3ca7c80220a005c1d6adfe6928834 *man/setExit.Rd
13336e23ac56af462447e3440b3b5ec9 *man/setPopulation.Rd
ebec89284d1ad8516a87b744d985a363 *man/set_seed.Rd
e50b5583b41cf59438d3076ed3c4d52e *man/smallPed.Rd
c4c71deb4643ecceee86f2d5a56d6757 *man/smallPedTree.Rd
382f6489d98ad249bc15bdb42b3d87e9 *man/str_detect_fixed_all.Rd
2fe90618f4bb4d0e2745b546fb27a300 *man/summary.Rd
f049fb3ac0499d43a9ff9ed7278d5fc5 *man/toCharacter.Rd
3668fa12702afd9e04df3f3ac9a19ec5 *man/trimPedigree.Rd
a6a16bddd7b61bb27e03b5c90ab32a84 *man/unknown2NA.Rd
ba96b23dd7eca1ad1c64415e6a107562 *man/withinIntegerRange.Rd
0a95913788952f03834ebd68785ee250 *tests/testthat.R
992d12224462fe1d77e0099a394068ef *tests/testthat/test_addBackSecondParents.R
2c2a8b0c7a1336311e9fad74ccb00d69 *tests/testthat/test_addErrTxt.R
abf2d82f04388dc0464742a2de00df85 *tests/testthat/test_addGenotype.R
2715c6f32ac42dfbffcdd1366a9849df *tests/testthat/test_addIdRecords.R
c3d6d4e03079be37b164b89d9caa6dd7 *tests/testthat/test_addParents.R
2d900716e2bbb55ffc9245e52425f1ad *tests/testthat/test_addSexAndAgeToGroup.R
e2506ec26f8be38d402e6b27d4b5026d *tests/testthat/test_addUIds.R
d2ab167f2bcec3e739bfe21f859a0ff2 *tests/testthat/test_allTrueNoNA.R
f2c69e880b0da325b6c2e7a7a4f44900 *tests/testthat/test_alleleFreq.R
47f46ba49333900e543af8758d1b924d *tests/testthat/test_assignAlleles.R
883aaa5923e0792e6b5a50e304af33bf *tests/testthat/test_calcA.R
70eaa66f74f6f294be325bb7cce24297 *tests/testthat/test_calcAge.R
9ffa8559f45b4d3f8b61504c6e5f9619 *tests/testthat/test_calcFE.R
2cb25b2096129b6314e5eb1047e43b73 *tests/testthat/test_calcFEFG.R
a78810b46b2adcf7e7d8efdc276486a1 *tests/testthat/test_calcFG.R
23739e39260450eee4e2f6240bd3a9a8 *tests/testthat/test_calcGU.R
543ff295d1f770754058b3005fbe4c30 *tests/testthat/test_calcRetention.R
8b9f9701cb2f9a642a990a221a20c3e6 *tests/testthat/test_calculatetSexRatio.R
b327d115ba9a37d13ef1d842d85841ab *tests/testthat/test_checkChangedColsLst.R
fc718ffcde6b41213f3f2c422fcbde29 *tests/testthat/test_checkErrorLst.R
75b76a12ab270dcf9958b899fa3eeec3 *tests/testthat/test_checkGenotypeFile.R
7395cdd45dd1495c557202cefed5175d *tests/testthat/test_checkParentAge.R
1b9365c102fc199f8194d894ac6aee11 *tests/testthat/test_checkRequiredCols.R
9368ac08fa20ace352f8a85f2f4c9127 *tests/testthat/test_chooseAllelesChar.R
0f4a55bda6f2d66b3d929451e5af9355 *tests/testthat/test_chooseDate.R
060fafc8d973f512f6fdb91c04678482 *tests/testthat/test_convertAncestry.R
53f1bdd0c373f4c619c2d49183155d42 *tests/testthat/test_convertDate.R
e9e54fea3aa4a0049002ac42e9dcf96e *tests/testthat/test_convertRelationships.R
7a6fa46a9c5a30f3bdd2f6011e584785 *tests/testthat/test_convertSexCodes.R
24a6bbef0ccd3a1e2ad292b34e2c1a24 *tests/testthat/test_convertStatusCodes.R
c6b069cf782cd05f872ae9a1bc2f2df4 *tests/testthat/test_correctParentSex.R
2151f2150841b11c9899cd4c26f5e54d *tests/testthat/test_countFirstOrder.R
ed4918690a7734f3adba299356e43695 *tests/testthat/test_countLoops.R
9d3996e1c483ad538235b94199e5c0ed *tests/testthat/test_createExampleFiles.R
8c42fea87fc8d22bf7cde75371be073e *tests/testthat/test_createPedOne.R
c969ffb44b435838a455909088d28b1d *tests/testthat/test_createPedSix.R
a11236447fef24045b8607ca9deeafcb *tests/testthat/test_createPedTree.R
0445504a2e25cdf9e06e307a85635cf4 *tests/testthat/test_create_wkbk.R
1a5e0b9ba09bfb36370c7fed0636dfec *tests/testthat/test_dataframe2string.R
b6988cd9fc2d27ffe6a306f90670b128 *tests/testthat/test_fillBins.R
31e07e452d315ce0bc65930d8a387f0d *tests/testthat/test_fillGroupMembers.R
0afe39a009c65bb368b06c921111b173 *tests/testthat/test_fillGroupMembersWithSexRatio.R
b228192279de562697daa7a60fffaed0 *tests/testthat/test_filterAge.R
7c3bcc759f3add190739faefbae4549d *tests/testthat/test_filterKinMatrix.R
3b8c5c6818a4cd87eea73af5ef119a54 *tests/testthat/test_filterPairs.R
6c0b10b130ffb5876c3dc38153f6eaac *tests/testthat/test_filterReport.R
afa336a66bc04217826b3345b6c77147 *tests/testthat/test_filterThreshold.R
5e854162628b1529ba3e7535a5967a68 *tests/testthat/test_findGeneration.R
76e502461589957f8bda7449e933543c *tests/testthat/test_findLoops.R
bbc05a9ffa0667dcf3ee5399c54be5ca *tests/testthat/test_findPedigreeNumber.R
84a8cd0e62bdfcdef7e8323019ed2512 *tests/testthat/test_fixGenotypeCols.R
e4f287bd23efaeff8f4acc40795d18ca *tests/testthat/test_geneDrop.R
1263047115b5df5629b7ba914ed78d33 *tests/testthat/test_getChangedColsTab.R
d68275b8d8ff3e9c07d3df69cc6a5ca9 *tests/testthat/test_getConfigFileName.R
f92b066c744f8b04a35fb33455d5df7d *tests/testthat/test_getDatedFilename.R
049d68644906cb42f8d07a9f190bccfe *tests/testthat/test_getDemographics.R
e86ad7678eadececf1b47a2abd886c58 *tests/testthat/test_getErrorTab.R
fea971b9bb867fda090a21f005812190 *tests/testthat/test_getFocalAnimalPed.R
9854794d605dffa70954208d1ddd0992 *tests/testthat/test_getGVPopulation.R
bf06b7e5fea91d075a34fccf0098c2e1 *tests/testthat/test_getGenotypes.R
67fc0bb07830b0dcefa106e7eabaa7f9 *tests/testthat/test_getIncludeColumns.R
08f55dea24c88d5a51a82add8744a952 *tests/testthat/test_getIndianOriginStatus.R
f62275f9f613524626b09f7cf261f51f *tests/testthat/test_getLkDirectAncestors.R
e5b6d117c14f4b9e1d83b68b77801c85 *tests/testthat/test_getLkDirectRelatives.R
84fe242cd692495f72048d143741629e *tests/testthat/test_getLogo.R
12d40915ba98a858f2c160dc5b3fca62 *tests/testthat/test_getMaxAx.R
972c70bdb4728bd4f3a718f7e50e56ba *tests/testthat/test_getMinParentAge.R
6d15ad4305248d3b6a6129fe3a2f8509 *tests/testthat/test_getOffspring.R
daa601cef938010e05d1922600b2c47a *tests/testthat/test_getParamDef.R
1ad9d98d39bcc7f5bbd89c6d02699feb *tests/testthat/test_getParents.R
d169a287caf81763543e16f3a05abb9d *tests/testthat/test_getPedMaxAge.R
10f4fcdfd3a7455fc5b4aa59efbff81d *tests/testthat/test_getPedigree.R
56a3d3ff15658d7c80cb371611e1ad78 *tests/testthat/test_getPossibleCols.R
2271aabd11a005ca47d47596836915dd *tests/testthat/test_getProbandPedigree.R
637d443063d35b9d1aa19e8d654a7241 *tests/testthat/test_getProductionStatus.R
0b161367812012998c571bd4be05e342 *tests/testthat/test_getProportionLow.R
c6a00b9314495e0e6d73f83e4da59d29 *tests/testthat/test_getPyramidAgeDist.R
ccbdb4287a526c9ec8fc30f2e65495b5 *tests/testthat/test_getPyramidPlot.R
78287c70339d2fde4b77b867aac3f254 *tests/testthat/test_getRecordStatusIndex.R
23cd7dc7e0571cace5d6724291c30b8d *tests/testthat/test_getSiteInfo.R
e3c0756e9ff6d75c06c1f41600bdd09c *tests/testthat/test_getTokenList.R
c07a62dbe92802fd924c93a0a81f2394 *tests/testthat/test_getVersion.R
f951726553f445b68ef42ec5a7acd5da *tests/testthat/test_get_elapsed_time_str.R
c51d17ef8083168df5afdfd358e4dc1b *tests/testthat/test_groupAddAssign.R
7c9b461987ee92eae370edc7ee5f6471 *tests/testthat/test_hasGenotype.R
88551e2f2564570abdc801aa320c7ccb *tests/testthat/test_headerDisplayNames.R
27ea8ab2e405fce062519e882a743f80 *tests/testthat/test_insertErrorTab.R
255067d5039cf586f3ee5af44966557d *tests/testthat/test_insertSeparators.R
79b4941aec3e0aed42e2823c04e8067b *tests/testthat/test_is_valid_date_str.R
e72559409c8c90349b6825dad3c9ea07 *tests/testthat/test_kinMatrix2LongForm.R
7e90c4317b65cc905337846ed59792af *tests/testthat/test_kinship.R
9d3996e1c483ad538235b94199e5c0ed *tests/testthat/test_makeExamplePedigreeFile.R
6d396ef45a6ce1f3be533094453c03c4 *tests/testthat/test_makeGeneticDiversityDashboard.R
b231dab57a5892b4695ab7e55e40493d *tests/testthat/test_makeGroupMembers.R
de24dc13400e9573b11762ca17f252cb *tests/testthat/test_makeRelationsClasses.R
800c0e02060e4fced629f9a3dc7066de *tests/testthat/test_makeRoundup.R
b759551db3f0aa6fe004e164d5b91da7 *tests/testthat/test_mapIdsToObfuscated.R
e2c06469368bd1f575d03e11d5feede5 *tests/testthat/test_meanKinship.R
97550582a3fdf55efff213e9771ce992 *tests/testthat/test_obfuscateDate.R
86a540f1a7a782bccdbb384ff58bbc0d *tests/testthat/test_obfuscateId.R
75a4a801b55c58c5f2b127807b2b41b6 *tests/testthat/test_obfuscatePed.R
9c8058fe4cfb6fafc230ad955e8fddb7 *tests/testthat/test_orderReport.R
7c229253bc24b79f69d749c2c3bdf440 *tests/testthat/test_print.summary.nprcgenekeeprErr.R
bf1405a49858e562d792e8cd00002dcb *tests/testthat/test_print.summary.nprcgenekeeprGV.R
b3fe5f8927299efb6012580fb47bed72 *tests/testthat/test_qcStudbook.R
1c49f6f355f22bdaf89ee5e94d10216c *tests/testthat/test_rankSubjects.R
16c3643e6e7537acf21919eaa4f3340e *tests/testthat/test_removeDuplicates.R
df23109582d78ff693ba69636d778766 *tests/testthat/test_removeEarlyDates.R
7ed2867dcc94ab467374424334c5f137 *tests/testthat/test_removeUninformativeFounders.R
777867b7d0c0fe7d1cc5b4dea220347e *tests/testthat/test_removeUnknownAnimals.R
1f34e092e006564ae04834ef3f6b624b *tests/testthat/test_reportGV.R
e1be2598c18d836b67f08dadf59565c8 *tests/testthat/test_resetGroup.R
2e23bee23a2a564e0e87d1f49720af78 *tests/testthat/test_resetPopulation.R
a94ede03a5c10dca2de259344096f77e *tests/testthat/test_setExit.R
dad790b32d370264f1f5a6473cce96e9 *tests/testthat/test_summary.nprcgenekeeprErr.R
01d2a10054c66be3dfa3328d0321b552 *tests/testthat/test_summary.nprcgenekeeprGV.R
3fef826ee46d2820ddba406fb55e1e9d *tests/testthat/test_trimPedigree.R
a9b19469792fa0fc4a2861b4dd4406ed *tests/testthat/test_withinIntegerRange.R
cabc00f13501e064ef246fb671ad2fa2 *vignettes/a2interactive.Rmd
3117d0d02b1a6e53339adb214bec9fa8 *vignettes/a3manual.Rmd
aaf4e38e542b612bc86df528243d5c81 *vignettes/a4Development_Plans.Rmd
e16e83b8e357490a39f97b231382f840 *vignettes/manual_components/_breeding_group_algorithm.Rmd
a8322377e693ea5a8077c6009f4825a8 *vignettes/manual_components/_breeding_group_formation.Rmd
afafd498288bebb22bad9dc0b004a74e *vignettes/manual_components/_database_access.Rmd
160de0bd5f7a30a5d7323bd909c4d0f8 *vignettes/manual_components/_genetic_value_analysis.Rmd
22b0c90797406ea4a2fa142e4be434d3 *vignettes/manual_components/_genome_uniqueness_algorithm.Rmd
b341af158e7f89e78be086911d6b2634 *vignettes/manual_components/_gv_and_bg_desc.Rmd
d4ab4f5fdf03d6ea71a29896cbe11ef1 *vignettes/manual_components/_input.Rmd
bd12900b778b0852c400f1ced235fefe *vignettes/manual_components/_installation.Rmd
a6b0eb40a50ee7e5eb6576a1d54da7f7 *vignettes/manual_components/_introduction.Rmd
b3078abc636004bb00f37bd056568da0 *vignettes/manual_components/_online_documentation.Rmd
e6ab0cf7b35927a0bb200a835cf912ad *vignettes/manual_components/_orip_reporting.Rmd
b759e127f962506e0c2b305e443aecc9 *vignettes/manual_components/_pedigree_browser.Rmd
8e8a9f30d9914f257ba6ac35430b24b7 *vignettes/manual_components/_running_shiny_application.Rmd
590e2a94399a94a7a8963a7bd507ae7f *vignettes/manual_components/_software_development.Rmd
2fe1cbb1cba61e54efedcf71165bfe28 *vignettes/manual_components/_summary_of_major_functions.Rmd
ed022c938f3677c12bb958761532751a *vignettes/manual_components/_summary_statistics.Rmd
