00dfc5e581297fcd6e847823810ab76b *DESCRIPTION
06341c75755497098278342789e386e9 *NAMESPACE
da7171e648d164e82dcd8d9c464f5220 *R/acum.R
8ad851748035e4241b64fc8188709fd6 *R/add_marker.R
24aeca9a81458067c1c34d8f0478245e *R/adjust_rils.R
ad7ed629b5b695674a7623e7dc2a3e32 *R/avoid_reverse.R
9dcb876e0e85cff9c414a1d0d45d30da *R/codif_data.R
679b7d48a75cf9a469056587ce7590f1 *R/comb_ger.R
6185739025a1d16d19114afb3c4503e9 *R/combine_onemap.R
57ea76dde521271dd9516ce1184a4cd2 *R/compare.R
4bb3940f62746022ac370a0b3128cdb3 *R/cpp_utils.R
e6706898e19c3ef93303dafd0e6da5b7 *R/create_dataset_bins.R
db9d62c9b9cb777cd02c935be1466e46 *R/draw_map.R
09c825da0202abb82f74c89c30bc6c1e *R/draw_map2.R
25232265cbdb40a78df34d1bffc86025 *R/drop_marker.R
d0aa81bb8bc74ccba8ba096f2042bb37 *R/find_bins.R
10aa9db5c3020980aa179b6604b130d6 *R/get_info_2pt.R
0d07167e5877031a8e840366b1cdf02d *R/group.R
24eb059f3adcd58964a8ddca45bc598f *R/group_seq.R
00375be99e823a6534ed823e773378c7 *R/make_seq.R
018bfa36a79366dea9d47130a4a6ba55 *R/map.R
7a3d0919dc795c4bf0d6a9475e77b76e *R/map_func.R
b8a50c013292f08ac55eff80012ca602 *R/marker_type.R
805489594c446b55b91af921463c547c *R/mds_onemap.R
227c98dca9b16db617e7c83d2a5d5cff *R/onemap_read_vcfR.R
329d571606d93a684ba5acebe2af57a3 *R/order_seq.R
e39dfa2a2656d5abe26c41d5ffe68e16 *R/permutations.R
e47c1d6dec351b6beaee8defd6f04b9f *R/phases.R
4089ac441c395b201764dfaf2ced2f82 *R/plot_raw_data.R
fbc0df02a3e2f1d607595542eae77473 *R/rcd.R
f7b3da1575bb6054f6b8887c736cce94 *R/read_mapmaker.R
f108ca523881759dd5e7c73ae220196f *R/read_onemap.R
3c47157f7a893e06241abe88b5549dce *R/record.R
77953544c391998bfde717a424dc3a4c *R/return_geno.R
1fae893d6d931c38df59d31697e210c9 *R/rf_2pts.R
54c2cd817b852e1aab2380dc98791f4e *R/rf_graph_table.R
e5d2b111fd13920ef33f7e300ddf4e42 *R/ripple_seq.R
88dbba525375e126bcc83ff15e6982ce *R/seriation.R
c6e4f79a5944525c9290e772b234deea *R/suggest_lod.R
a0900e3cdb609a2cb68eff31a7970091 *R/test_segregation.R
6b4f911a12f7168beddc08f29a677b9d *R/try_seq.R
5431e846ea7baabc51f069341cd4c627 *R/ug.R
32fc1c9b890b21c22e2cd584cbe0b6f5 *R/vcf2raw.R
f1de499bb4a130bd8d9faae1ae2f2212 *R/write_map.R
1e3f33e7d4c29cf3e8db0d382eb7d616 *R/zzz.R
068e8c24ac04602d6c296868e0565bda *build/vignette.rds
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2e625eb160dd70eb2f00b1aa03d2d0a5 *data/mapmaker_example_f2.RData
30fe36608f7a18f04884210579dfea6f *data/onemap_example_bc.RData
38304098ee6c4053dde67c39c6b73eb8 *data/onemap_example_f2.RData
4d4bc1b3035b895bf8b5c6519cb1fd73 *data/onemap_example_out.RData
b363cc6b7d7b60c8025be1d3d802d353 *data/onemap_example_riself.RData
10c4b14463d2918ab845fe9c62219b50 *data/vcf_example_bc.RData
e1bf891b8a9dd9354d081c47ff3578fd *data/vcf_example_f2.RData
d095c21457d4d8bae2b1c7c165b885ae *data/vcf_example_out.RData
4ccbe6506a89717dc0915d47a20d3243 *data/vcf_example_riself.RData
8934eb657a72f60daaada82d6c66993d *inst/CITATION
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5e23220d0a1e21d994f46ffa228dbb84 *inst/doc/Inbred_Based_Populations.R
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4e26da880da89bb5eafafbbd320ae942 *inst/doc/Inbred_Based_Populations.html
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7c6d277673391245e3978dc790d974a8 *inst/doc/Introduction_R.html
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55c09b26139a289512b39570e0b1018e *inst/doc/Outcrossing_Populations.Rmd
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5227e08ecacac948413d745ed0674151 *inst/doc/Overview.R
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7baec346b320f0c86a067449eca80060 *man/Bonferroni_alpha.Rd
d340544ac88e04ff31821fe0b8ca48ce *man/add_marker.Rd
ad0b3ec3a1296d7438539fbc7fb04c0a *man/combine_onemap.Rd
39c36b3c98c77eb1b2ed9f744a7762ce *man/compare.Rd
3c8901bd71bd028b13406707f03a8b2d *man/create_data_bins.Rd
6d21b54e46bbbe750bfb5bc5ad8bc63b *man/create_dataframe_for_plot_outcross.Rd
20b9b736ee8f15fb21a17efebc783f4d *man/draw_map.Rd
3b68a09370721309db992754ec2fe285 *man/draw_map2.Rd
ac3ded3abc2f5f518fbe38d8b901d7b3 *man/drop_marker.Rd
b1a8a182ae90cf9b2a5a0fccaed37ca7 *man/est_map_hmm_out.Rd
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12c3d9fdac7725c5c32c0daf15091225 *man/group.Rd
7437307619d1f52e16bb446d2406e507 *man/group_seq.Rd
a334c9201959a36d6173b87fc2b52f15 *man/make_seq.Rd
9af9a0b81b051ea7673a28798d03195a *man/map.Rd
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59b2b7d4f72558fdcc3505f2df22bb62 *man/mapmaker_example_bc.Rd
0bc21d57d43e7c549468bd4a265dfcf3 *man/mapmaker_example_f2.Rd
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3a6f6f816e9ec6fa3f9f3e1bdb55feb9 *man/mds_onemap.Rd
a9235d261110cd50e4f354a7ca841b97 *man/onemap-internal.Rd
6f10ce2dad045471590318b6c191a7aa *man/onemap_example_bc.Rd
d2fed9c17ec56d10237a0e376d96bd0b *man/onemap_example_f2.Rd
025ebcd5096321cf4923aeb1b532e875 *man/onemap_example_out.Rd
9312e9c94b6bb1f49df6eb4fa5d1bb35 *man/onemap_example_riself.Rd
699316cf5000358b3415c11bd8559d86 *man/onemap_read_vcfR.Rd
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0e72927973cfbfa7dd499ef7e7e084a3 *man/plot.onemap.Rd
4b282c49df15e6e798ae07d3bde2ac43 *man/plot.onemap_segreg_test.Rd
810495b02c844adce7133dbc1f00df0e *man/plot_by_segreg_type.Rd
8ea1717cca30b64d2450d53aec6c74aa *man/print.group.Rd
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7651c8f066ea9ae8ebb22ac135c54280 *man/print.onemap_segreg_test.Rd
f71224af5e281ac695d2ca49b8756fda *man/print.rf_2pts.Rd
9f815e72d10a75af3885710ba96a08f5 *man/print.try.Rd
5a8019dc64790759531e08bf3afffb0c *man/rcd.Rd
a4060fe670e409552c76a42cb1ecde3c *man/read_mapmaker.Rd
88e273576ddd60b85569300fb735fe0a *man/read_onemap.Rd
ab1ee6ad2b3366d239aecd4dfd58e33d *man/record.Rd
f4cb8e1911b960a9d6f61cc640f56fa7 *man/rf_2pts.Rd
7d63ed3e4028bbfe7738437dc744ee5e *man/rf_graph_table.Rd
6401a30d152e0e44b609a381a2ffb114 *man/ripple_seq.Rd
fb75cd85a6308cea7d2f5d90907947b1 *man/select_segreg.Rd
a7cc38fecf4d11dcae3b4ec0442313fc *man/seriation.Rd
eb130e3bba27e0b7cf7bd88c4194e0a3 *man/set_map_fun.Rd
d4f0c921c444e43e6f1e1a3c111250a7 *man/suggest_lod.Rd
c3ef0b3e1816f195cd58258aa4a2c725 *man/test_segregation.Rd
aa87a627bd56b0dd0cba4e046767531d *man/test_segregation_of_a_marker.Rd
faea6d1943effa8ed01cabafa84b8d12 *man/try_seq.Rd
0b1d5fef0cee96da942d771fcdf6ef92 *man/ug.Rd
bad941b80c7579c1e4cb0f289cc2a934 *man/vcf2raw.Rd
5b686d89c9558b0007f475b63dc8843d *man/vcf_example_bc.Rd
bb3fd874d1b11645061401398a65e5e4 *man/vcf_example_f2.Rd
cbd0cf42807b64ba1a4be927d32150f5 *man/vcf_example_out.Rd
38f17b0f43e70821d2c993a3dbe6d315 *man/vcf_example_riself.Rd
59bd6f3e67a8625751be27ccd6a59af4 *man/write_map.Rd
2cb24dd0cdaeb131b68f160744fffaa9 *man/write_onemap_raw.Rd
a11ac6d801c546672aa2f3ccc8953515 *src/Makevars.win
5418a22dc21075664f1692b5664ea6d9 *src/f2_est.cpp
9d15369b4cc0750a3bd730521fd150a0 *src/f2_est.h
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7d54448f5f999f806011278b2d141c16 *src/find_bins.h
4e927fcae74f0e597cc61d8c170328e4 *src/hmm_bc.cpp
8b83322051db2deb02f8aed43f478521 *src/hmm_bc.h
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0fd3e4e925b6092bb4f2eee4ec9cd9c3 *src/hmm_f2.h
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671b15741cd504e66e1c6358b2c79d5a *src/out_est.cpp
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91a5c535d0688e5453e1eb9e11d3f7db *src/twopts_bc.cpp
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ea7539cafa32cbd76c2abdc3d3338525 *src/twopts_f2.cpp
3ec52c3e9b6a698024d265989f76757a *src/twopts_f2.h
4b48ecab86af05154a423468d689c046 *src/twopts_out.cpp
13a67e5f0fca7ee4ea47640c042f3d13 *src/twopts_out.h
563f9b9402d106f00da127b0fd644fad *src/utils.cpp
c03c87974cc7937cbb8161598b124313 *src/utils.h
1ca21904a758af533ac70e0bee55696f *vignettes/Inbred_Based_Populations.Rmd
ac693165a93a7fdb459bfb29cf7def72 *vignettes/Introduction_R.Rmd
55c09b26139a289512b39570e0b1018e *vignettes/Outcrossing_Populations.Rmd
1e530845be9b4a9041e95f685cca08b8 *vignettes/Overview.Rmd
5b9487f1c60b6c366f0969510c594971 *vignettes/test.txt
