6a834e6442c85225fb5a14cd6aaf94d3 *DESCRIPTION
f1e231be6bc0b816572219efd5e0f084 *NAMESPACE
ec46d79ec9bf83431daf2926ee599e7c *R/RcppExports.R
5fb523f7df4f3f42880d97ed8539eba0 *R/add_marker.R
e9b787162912cecbb563c45792ffced6 *R/adjust_rils.R
0ff37b5d477e8d11167bdad9b7bc71a1 *R/avoid_reverse.R
c02c55df636f746b0ea7d5dc1736d638 *R/codif_data.R
940e97fb15a422fe445becf9f1595b26 *R/comb_ger.R
b4aeab4ee4f8bd4a85153b0c8667f36a *R/combine_onemap.R
6dbd43eafbbe5cd64011fa542b7a0729 *R/compare.R
f42a21e0a10eeb7554e60eae51facf16 *R/cpp_utils.R
97c243ffa267bd7866cc85bf33fb81ed *R/create_dataset_bins.R
36451545cd44eb2b278036c4a3856d3d *R/create_depths_profile.R
a4c262cc11a623a1242e059b7bafecfa *R/create_probs.R
124aefcdbc4d03b6e1bdafad77989a59 *R/draw_map.R
f0d9f5ce9d8baf446bc3449e345bfc5c *R/draw_map2.R
350c89b9418ffa63c5a912b32ced064a *R/drop_marker.R
aeba9638eefc276ced13acd30f1e9cf6 *R/extract_depth.R
090354e68ba2b2c7cf69428bd7c5643a *R/filters.R
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0808fe6ca20d767de1fa2eebb8ed2a19 *R/get_info_2pt.R
a665eb38d7cdb6bedf2ec398b4c9decc *R/group.R
4746bf953b1edd2da2c5845286a7e37c *R/group_seq.R
0958117c345d8113d3b2b45f2725e554 *R/group_upgma.R
78280b30e6cb5d2c7b4a104758495de5 *R/make_seq.R
ab6f1f6eab8f56af1c117635d8e25af0 *R/map.R
0cd6d2e7ba2c87da75dff462a1513ecc *R/map_func.R
aaa3344bea2b00e178ece480458be278 *R/marker_type.R
bcd9b1b47d0f33ee4f258d6828b91092 *R/mds_onemap.R
33fb361c110b4be4f3a50ad3081fc972 *R/onemap_read_vcfR.R
d1368269f19b8ac6f71c7f5b9469a51e *R/order_seq.R
c76728c269eda0e10435833272546035 *R/overlapping_batches.R
b0e507a62ee8319e3f77e06e8f1f7c26 *R/parmap.R
af4638fdcffa6b42bf60b7a270887a80 *R/permutations.R
09dc265028fd50e4d6fa4d63fea8ea9c *R/phases.R
3bd642d9bde67a0c31758b5a93f28b4e *R/plot_raw_data.R
75ce76299e84e02d93f5b0637f5a38f0 *R/rcd.R
abf6852181b72897f947fc0615011710 *R/read_mapmaker.R
a28aad7c0ab10c8a537be5a9fc08dbf3 *R/read_onemap.R
94fbdaef54fd7c8c8c04cfcba6d6e5b3 *R/record.R
ade51f5f45bcb7a6528d2b218d7b918f *R/return_geno.R
4fb91542b2a941bbf33ae0f1ad8eb750 *R/rf_2pts.R
ec68cc342951fe764199ae5561f52f48 *R/rf_graph_table.R
5dbd28a6f3666d2d4175bb7b089819b9 *R/ripple_seq.R
664cc202374dc447e23d3d22f19277d8 *R/seeded_map.R
f59c122df847d06824e3c3b3b433cb58 *R/seriation.R
4c7a9f6f35d0269225a7ce6b347ae724 *R/suggest_lod.R
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f15d616e9bffe454bc613cb03a2c8129 *R/try_seq.R
8e7d4ac9ca5e2a58448c63535c622aef *R/ug.R
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501be1d8af9c9cff3f93f7a284fd2d3f *R/vcf2raw.R
03cd78d82226250df1773adfefcf3254 *R/write_haplotypes.R
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deb968a90c9b979d87bc1c020fa3d287 *R/zzz.R
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0be3532191fc6192c420a758d6bd8760 *build/vignette.rds
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49b94eb483d403b73216ac23a225d661 *data/onemap_example_f2.RData
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2ec18a6bc4660b98bca8149504791764 *data/vcf_example_riself.RData
8934eb657a72f60daaada82d6c66993d *inst/CITATION
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6ea1a95bd96ba76635119d871041b163 *inst/doc/Inbred_Based_Populations.Rmd
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5623c7cb67b5774781bc269fa324301a *man/add_redundants.Rd
1109ee1380561319ebd037ea4038944f *man/check_data.Rd
43e831b8a962b55bd64dff70c5a34530 *man/check_twopts.Rd
4565369b03f91265d9538b948ed7859e *man/combine_onemap.Rd
8efb5877cf84df7dacc9d9f26b4623c4 *man/compare.Rd
03d4954d49432f93cc3d0e7b3158a40e *man/create_data_bins.Rd
6d21b54e46bbbe750bfb5bc5ad8bc63b *man/create_dataframe_for_plot_outcross.Rd
42e339418879884e4c078c3ca7118dbd *man/create_depths_profile.Rd
3f40eb506ea403474dd556fdfffad65a *man/create_probs.Rd
a3c399f5569c0fceeceb64bb22a6e979 *man/draw_map.Rd
bab4b92ed9830a730c27e28b958a6040 *man/draw_map2.Rd
3778ae0ed602ecce402bcd3187c1a566 *man/drop_marker.Rd
74426cb8096c0194ffba4e1e05af8f77 *man/empty_onemap_obj.Rd
01076dbb17c440eebf199f0e6772fd8e *man/est_hmm_out.Rd
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a4a4eb725d17ae8452eef7c7e5485be4 *man/extract_depth.Rd
01cebc90b934060582973f947634c293 *man/filter_2pts_gaps.Rd
b8466a58bec53049e77d7f8934a22b74 *man/filter_missing.Rd
2f894302f1bfa84c1592323b69ba38ec *man/filter_prob.Rd
50f6f546bdf54f98473342127b306233 *man/find_bins.Rd
5f46b89b3b88d441c7d6afb5df85913a *man/generate_overlapping_batches.Rd
1087c8d6fbfc87843c656adca721dc85 *man/group.Rd
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7686987842a76677d3f3f3a960fcf762 *man/group_upgma.Rd
345b9986ba4049b194d14820e36b3993 *man/haldane.Rd
c98bb7772369e9d8e720b0f64ca1fc9f *man/kosambi.Rd
5f7ea7c44da2465e2e73446d370a0f2c *man/make_seq.Rd
5dc154b2bbf13a53a8935808d991b74d *man/map.Rd
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70102e9036d693043f0398b73ef1d6b4 *man/marker_type.Rd
36feb666ed9c38309e158afdb4b2ea3b *man/mds_onemap.Rd
6f10ce2dad045471590318b6c191a7aa *man/onemap_example_bc.Rd
d2fed9c17ec56d10237a0e376d96bd0b *man/onemap_example_f2.Rd
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9312e9c94b6bb1f49df6eb4fa5d1bb35 *man/onemap_example_riself.Rd
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20279d8ca06dda6dd867f8cce38f8d8b *man/parents_haplotypes.Rd
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4ce2929ff8be57bf7aba8c54f0a04cfa *man/pick_batch_sizes.Rd
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9f815e72d10a75af3885710ba96a08f5 *man/print.try.Rd
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418f9f4ad50d1e56d8439498c55c993f *man/progeny_haplotypes_counts.Rd
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34441785936797f5babcea5ff8968908 *man/rm_dupli_mks.Rd
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7d2111e38759cafc02aec10b9abf1d69 *man/select_segreg.Rd
9a313e3376ea27662b8092ed4f1c4df7 *man/seq_by_type.Rd
7ec68aab2aea2baf793cb17b08a3e1e3 *man/seriation.Rd
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38f17b0f43e70821d2c993a3dbe6d315 *man/vcf_example_riself.Rd
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