3b243665efc0a3b0c1f0220f05b106f9 *ChangeLog
e7cd0266726164942ea0884d952f7dfe *DESCRIPTION
c4ee4d7e6f12b7ef2574bb68473b6d7d *NAMESPACE
c6bbf83dae894769984970f7b96ff07b *R/data.R
f5067401591b18aa83dcc2b4e2a52d52 *R/interface.R
8e360389fddd04b43ddd8bb729ca439c *R/mutationRates.R
1357e127711ef4cd682ad8ad56075535 *R/package.R
9ed947e5655cbfd5f5aebd9171316c5d *R/plot.R
7a8ea53fc3f80cb2bce1db43ea9ca7ec *R/reproRate.R
d471d8024d03924ef7803b6bbdfb78a4 *R/selectChains.R
1e51de84471375113f5036d99fea91fe *R/simOutbreak.R
fcdad47be4db1d0498492bc1e228173d *R/tTree.R
92d8aa7bf09017257369dcfdf00a82cb *R/zzz.R
6c704a80732f54e7fdee2b41517b0fad *README.md
e56780a724dcfbcf613481969680cfbb *cleanup
705266ab15a8fbc667fe5154674046f1 *configure
3be97bc4df819c3a5429ef21afc70dd5 *configure.ac
999579b31cc165da3ac161c33966957e *data/fakeOutbreak.RData
2cb344c2133da976ccf7ab341e81353b *inst/CITATION
ac5e12719e2ecbf8e290709b8b762489 *man/get.mu.Rd
3e233f1013a602d2e3df2a6bf09e1e8f *man/outbreaker.Rd
1478d3fc287ab1b8e3958a195b9b6294 *man/outbreaker.package.Rd
b168b0d6992e8eadca9649329e0a981f *man/plot.Rd
a538423257427c4a8f3259cd32ba238a *man/repro.Rd
287e50d3ad62875886e00d4807e4e1c3 *man/selectChains.Rd
dc4b25f2d89523a454a891a2bfac54e7 *man/simOutbreak.Rd
3b6c60ba5142cc7c6f01d82ad5247534 *man/simulated-outbreak-dataset.Rd
d25b9c152722367626f82b6589ed3645 *man/tTree.Rd
417be231e3b2ad76fb58f63e6282a843 *src/Makevars.in
3f7c071f1a65529da9c401162d49a54a *src/Makevars.win
99a7bee1d86047db4fbb293bbce66535 *src/common.h
ede986d59cbbe66f30cf24c8632bbe6d *src/distances.c
1cc954d68dfe5933d9424a3eac9b5bba *src/distances.h
6788333033e292df618bd68d140e03b8 *src/genclasses.c
0ac76e66d3934d32a2cc51abafffe829 *src/genclasses.h
3301c6dc9d874a2f6dee7e6170db2985 *src/init.c
4975d1b53399a67f5f94358a013d26b7 *src/init.h
83a270f777d54a124b3681a42bf7103a *src/likelihood.c
38fcf57840a35802c45118d43ced95bd *src/likelihood.h
02ba8d225eb3b405cd237e879b0abbba *src/matvec.c
b5e29a394d577993c7b301e2235c40ec *src/matvec.h
8325cc315d2881988b72a666ee60d945 *src/mcmc.c
1aef3fd5435b818318bb0fc3af1d1295 *src/mcmc.h
7ea50bca494303845e8ba4e62cd465ff *src/moves.c
d5e38df1932ec27dfa188ca56583868b *src/moves.h
ed2a1961d52ca656a0b6a40ef2b66ed7 *src/outbreaker.c
82505ec4f4ecfdc647ec952d99cbb5ab *src/outbreaker_init.c
ab6b405475a66ad44d59aa153d341ed3 *src/prior.c
8a56d478207d395beaf8a9c34758fa63 *src/prior.h
23b3ce9076784d8ed9249a0ee3720ce8 *src/structures.c
44952a4656aab0dfbe667a391543561c *src/structures.h
