# Generated by roxygen2: do not edit by hand

S3method("[",simOutbreak)
S3method(as.igraph,simOutbreak)
S3method(as.igraph,tTree)
S3method(findMutations,tTree)
S3method(labels,simOutbreak)
S3method(plot,simOutbreak)
S3method(plot,tTree)
S3method(print,simOutbreak)
export(get.R)
export(get.Rt)
export(get.incid)
export(get.mu)
export(get.tTree)
export(outbreaker)
export(outbreaker.parallel)
export(plotChains)
export(plotOutbreak)
export(selectChains)
export(simOutbreak)
export(transGraph)
import(igraph)
import(parallel)
importFrom(adegenet,findMutations)
importFrom(adegenet,funky)
importFrom(adegenet,num2col)
importFrom(adegenet,transp)
importFrom(ape,as.DNAbin)
importFrom(ape,dist.dna)
importFrom(grDevices,colorRampPalette)
importFrom(grDevices,grey)
importFrom(graphics,arrows)
importFrom(graphics,barplot)
importFrom(graphics,boxplot)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,matplot)
importFrom(graphics,mtext)
importFrom(graphics,plot)
importFrom(graphics,points)
importFrom(graphics,text)
importFrom(stats,anova)
importFrom(stats,density)
importFrom(stats,dexp)
importFrom(stats,dist)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,rbinom)
importFrom(stats,rnorm)
importFrom(stats,rpois)
importFrom(stats,runif)
importFrom(utils,packageDescription)
importFrom(utils,read.table)
useDynLib(outbreaker, .registration = TRUE)
