commit e4992c135fba3f1867c2427c92f9280358e3f667
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Release papeR 1.0-5

commit d4fa56006972bff34b40838c2a3163f7f4a03374
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Fixed bug introduced by changes in survival

commit ec5fd870211ea29c88ad80ebc87437ae5856edeb
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Fix issues with tibbles (from dplyr); Solves #43

commit 9e79d5b1c73e8a2db69449b19104bc65926b776d
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Release papeR 1.0-4

commit d472cf04388f1b817aeee1b65d96590bcc3a28f4
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    fixed handling of trailing zeros in prettify (closes #40)

commit 193c385ecbc5fdb3d8154bdafddf443b3bc61c49
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    fix error in vignette

commit cbbfbedff3eda3f48f2ea55d8ba675ed2502eaaa
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    add rmarkdown to Suggests

commit 664c1c822fd5b000585baed5cb04cbaf7d180978
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Release papeR 1.0-3

commit 6ea6cda410b8c68cf54ac1445d1c0cbdbfafa579
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    stop checking for specific error message (closes #39)

commit bc51e9e5ee44092893a6d91b282c848191a0d185
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    and now?

commit 1d6b6c01c42c1095fe8bd8e3933f6d336a95fbc2
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    next try

commit ddc38e2f0d073138d846a2f0a3f20f75f85c0bf2
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    try to fix latex on travis-ci

commit 18482aad1486c0c0bf246128081018c50fa38349
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Updated travis-ci

commit 80bffd468543bd168245f8d002989e1d93c80ddc
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    make rmarkdown happy. closes #35

commit 8da188f56533ae269bfd29794a134dbe1dbf905e
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    Release version 1.0-2
    (update README, update links to https, update release related material)

commit 7caff5ad03f108f62ed39a1805684d75851bdf39
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    removed confint.lme to make CRAN happy (fixes #34)

commit d21752e66d27f00b54291ef519b147175a4aa28b
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    changed maintainer's email address

commit 05c32776f2de939e73baddcb42a89debb32f5e10
Author: Benjamin Hofner <benjamin.hofner@pei.de>

    fixed bug in label assignment

commit 5869382694b10000efa843db10a47bb3e2568117
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed #33

commit ce9d2a3f18956f237c87fbc5c5e38b64a4692e6c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    New release version 1.0-1

commit ae8be3cf011a3ac97dbf8d28ec35e85997215b00
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Minor changes to SOP

commit dc7101d6471edd6748af1f3a0dc650ed0c8376c8
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Moved tables.png to make it permanent in source package

commit d3ed83d6214161e4aa578d3d3a6f3dd96105e9f8
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed typo in math.style.exponents

commit 269e9ee0db6c720d80949445db000a03efe9067b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update appveyor.yml

commit 42e0afaf51f536b9efd73134e191696a9489156c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fix problems with include.rownames

commit 0b5613c57062872406e286113bfa79cd3227a273
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed problem with include.rownames by ignoring the option (fixes #30)
    Use $-$ per default for negative numeric values (fixes #32)

commit 6734fa379a3a398f6fbe2cb016f23f25ab5faec6
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated NEWS

commit a49591a786aab58cafac0917972ba7782ba084da
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Make new version of testthat happy

commit 5d150c19ccc75118ef98d3372f71f1221c025f1b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Improve prettify for Cox fraity models

commit 2050be09f44fb9d02ee9dfbc08debdcf44e86537
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fix interface for dates (still not working completely, see #25)

commit d13755d41bbfac74359c700c1742e14eb5f62212
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    prettify: Added support for Cox fraity models

commit 1d7be45403edcca736dbcee9c765f3bccfed0765
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed refactored code to compute numeric summary

commit 29365497bbaafa027b2035bcfb510a5a5a705549
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed messages of old summary functions

commit f31d5a4aef9679d846ab4e1d14f61260ccf608f1
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    print.xtable.summary now also centers tables per default if floating = FALSE

commit 997c8c9b7098b5b42b607a3f8019f4d27fb0a37e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Increase patch level

commit cd695dc557c9b037c6387ad14baeb32039e5b0d7
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Typo

commit 03b1ea422d5c1d888878a4c113d70c8d4ec1ad28
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Prepare release version 1.0-0

commit e3ce58be24758f2d433adfc590744584b2884b86
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated README.md

commit 7a1f3fa1c42fb8cf6d360c9ba6c778c8a47c8128
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    newline not after longtables

commit f60698729c3d99a7864afd4615b05351bd5e9402
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    forgot to import plot

commit ca3e835d1b5ea0e1c4d1cef918e908db3099db48
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Add a newline after tables without floating environment

commit 14a8fd1b0b13faa8e26a8ccf577916f9bffcc467
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Renamed vignette

commit 7ef265c5aceb5b697ca6606c0c627aedd13f10aa
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated markdown vignette

commit e6a7f9a7c3e574362160db4cc9dde32b42df57d6
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Moved and improved Latex-based vignette

commit ddf8bb909a9abf1f3fc5be6fa01345ce1befb8fa
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated .Rbuildignore to reflect recent changes

commit a97ae154c280ad29725d8449a159d74a70f7f6ee
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fix prettify.summary:
    make sure that confint is only computed if needed
    make sure extra.column works

commit 40faa60f6c7bf3a6ae63e426d488732d1efae4d7
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed prettified labeled anova

commit d1848260dfaa4b40b5a6508d0647f38104ab809d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Speed up tests and added test for grouped summaries

commit fef4c6fc456c37943ae9ea35186d37f50b641146
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added tests for methods for class 'LatexBibtex'

commit 25c501337d3076786573af77f21959fe3cd6e54b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Exclude functions from coverage

commit ab2b4aec2aff468dd55c55ef2bb23c7f8684f501
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated CITATION

commit bea3faf6f68011ffbe5aef169d0e5d8be472be3f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Export print.LatexBibtex

commit 94599a19bd8a2161609b4718813017195313241b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Require testthat >= 0.10.0

commit eca360e155731891bf1b9ad773fc081f2c7e81a5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Add captions where missing (fixes #22)
    Add comments regarding LaTeX packages (fixes #23)

commit 21eacbaef0f17c0784eecd2ea8d89c2235abab02
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Removed deprecated function toLatex.table

commit 65ec50f9b852ad78771dcda0bb16a122d66b25bd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed console output of summarize(); Added group labels (fixes #19, #21)

commit 158e8a3262ea2af003709454fea5caaaeb3124ad
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    summarize:
    - added argument "labels"
    - use \endhead if longtables are printed (fixes #20)

commit 493484012a42e63f51da70cd5f2711d9572ef31a
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated tests for summary tables

commit eb76c4c2656f035bf9550bc439fbe241d3a5238d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Bugfixes and improvements in summarize:
    - Make tests condtional on group
    - Fix latex.table.xxx
    - A lot of fixes for grouped tables of factor variables

commit cbe3a9c77dd7b2d3c0eb38edf6d8aeca772bfca8
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added tests for prettify.anova and more test for prettify.summary.coxph

commit 6effb09500751b9aaa16433feb0a1df0707cd6dc
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    exclude prettify.summary.mer from test coverage

commit 0ca4fb8325b44ec65727bb1c448586c3a17add58
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Bufixes in prettify functions for coxph and lmer

commit f5e2ca7569625654de4ad50b044926cdba1111da
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    minor fix in tests

commit aa2b2205c666506ebb5fb38324fb3a7aafaeeb59
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Test labels.lv(, abbreviate)

commit e87e5e42f26acc9bcb5b4dc3f1f14ea97bb90893
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Prettify now tested using testthat

commit b28ef34fac02dc79e2cc108b1d6f6507b1a5b477
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Test prettify with OR

commit ed877c024133206660bdada2aa238ee64aa68ba4
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added class lv to all variables in a labeled data.frame

commit 862cbc7516223d5c3274c4321b6552ab8c31cefe
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Moved parts of regtest-prettify.R to test-prettify.R

commit fc2124054e110e55fb8ff586ed2353c1fc37730c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added tests for labels(data)[i] <-

commit 9b524a40fb746cb7ebd80323dbff859a3c24a7cd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    class(mod) == "mer" replaced by inherits(mod, "mer")

commit d4d9947b215e8b4725c1de9d95d328a6c88f53a8
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    removed deprecated function

commit 7ad6627e70c8c6249bd64fce93bedbbff905f74a
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added first tests for labels

commit 3768ea38c0aada899a0c614cd28f90527da34054
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added SPSS example data

commit 9b57de48de3a80ccf767e1811e864aefcf93d4c8
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated tests for toLatex

commit a26d932b7c1a79ed8011d97c864be82d980c12b8
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added tests for plot

commit 5a0f207a69e4759de675c7b84ff8a3516bf284f9
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated toLatex function, manual and added tests

commit f196045c5176d183f0e95424c25b7dc1148a8fd7
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit 15b9cf5fb11cc69ca1e5d18178877e09a7cf4eed
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit ab74ceb52dc2617e248e9f8b63f5a32a31e34a6f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update .travis.yml

commit d75d56823151ae55a192875947548ef139d7e319
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit 5235fcc88f0989266092fe13f3d53a8fa0dbe74d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added first tests for helper functions

commit 70936caf113a64e6c2e163605ada9287c149c8fd
Merge: f757e17 9b25af5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Merge branch 'testthat'

commit f757e17ac55df97ea30d0da90f0c494c2cd4e5ff
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added pseudo vignette for tables

commit 1a339045abe436d5ee71f240f6e1fa3175a8513f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added missing argument to docu of xtable.summary

commit 7d8ea12f7e6998fd0a3f18667e09f685c180dd6a
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added manual for xtable.summary and print.xtable.summary

commit f665ff502ffd9342a7b31c70ff3cab1198d73d0c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed manual of summarize

commit 22ec319a867fbaf5d2473c1af22607f5494a954c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated inst/NEWS.Rd

commit 1daf528e1831fa87ca0aeb81ac1a2ad2954b0550
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated description

commit b2efcf55d973c978779ee8d65b24bfbdffaf4709
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated vignette

commit 1c0821b94c7715b5f2125d61829511aafb0fc3f0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fix tests for grouped summary tables; close #14

commit 1eb73aa8909931ea0a97d1a7d079f06072a1019d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fix labels; close #16

commit 00bc6741966818dadfc688acdbc8623235e9c54c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    summarize: fix handling of latex escapes; close #17

commit 822ee3e576a6eec5ae455cd880c208419d4ae877
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed check_which to handle integer valued indices correctly

commit 4e332b1d045c350cc32b96dd4b59056bf0b830d3
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added first version of vignette; close #7

commit be3b743ceeb804bddada5c123d3eb4b61ffb5ba4
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    rename .labeled.data.frame to .ldf (closes #13)

commit 3ce05968e2abdfd6f6b1f03022316c46c094137a
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added documentation of convert.labels

commit 155a5fe0ceaa7e417d4ae43780ab501f019f4d6c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    clean up after merge

commit 8b510d32ed2d489a9bd9ac7b7e1db5e20b7c8bc0
Merge: 842eee8 89fb34e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Merge branch 'new_summary_tables'

commit 9b25af597eea77d2f12781e7ed406a795bf19b19
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Start using testthat

commit 842eee8c833d219b350f8b364fe7863cb44d8f00
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed typo

commit 323e832ab217ebd475ae27d1fd8767cff0c61109
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Add AppVeyor badge

commit 038d38dc582b609ab50ec0d4cf57968ce187bf49
Merge: ba642d7 112b2bd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Merge branch 'master' of github.com:hofnerb/papeR

commit ba642d75d74aecada4869f96b7cab2198ac1a1df
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    CI: Use AppVeyor to build/check on Windows

commit 596cf6954e01c1ef87e6c75ef7d4b4e0a1641637
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Re-introduce labeled data frames (as class ldf). Plot now dispatches on ldf

commit 112b2bd7c7cc2c1837033a37962fdce01cabee92
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit e4a9962bd0577d1f6cca8694d4b25a2f7d65d661
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Make plot working

commit 9c5eccd23840fcc83edca28d2ab3f4541ba96f5b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update DESCRIPTION

commit 83b7ad8d002b922a34b21e157a471ac9151615d9
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Try to overwrite standard generic graphics::plot

commit 22d546a64a29d704c6792f7b7f227c61c4c0bec1
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Overwrite standard generic base::labels

commit 6525e82585221e8c16db70b12d8168addc21b9df
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    labels are now attached to variables; removed special class 'labeled.data.frame' (fix #9)

commit 28d2cc4fdb9c92bb2f43edaac7d9ddb4689ffacf
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    First version of labeled data.frame where labels are attached to data columns

commit ad0d70f86fa27efb51606c03002a7c8c99b49c47
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Adhere to CRAN policies regarding import of base packages (closes #8)

commit 8055593ccfb7a318568217b1b94fb7a7d6b3a52f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Release version 0.6-1

commit 53af00eed67120fe8c2250110002d46df8a5adbd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    make CRAN happy: change \donttest to \dontrun

commit ca83acec233d162eefbd166522789e8e6e4add57
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (Try to) make CRAN happy

commit 885d6d8648b74192b993c0d2529443aeba7105e7
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Final changes for release 0.6-0; Added inst/CONTRIBUTIONS and inst/COPYRIGHTS

commit de391018cc43b3f0d932ec6958c20dfe7c3d0616
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Added inst/COPYRIGHTS

commit 433f05ded9af58893c581e5698a0210a91904e5e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    started preparation of release candidate 0.6-0

commit 12f22f1c3514e092f906a0f0696266bb63746a5f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Make title field to be in title case

commit c978941dc7641a6976907f21e6d48fca1afaa1d3
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Do not replace registered S3 methods from base/recommended packages (fixes #5)

commit 88b43e92059d4de8c7d9979c34d2fb0b60a58633
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated .Rbuildignore

commit 89fb34edad894523edf2a889c9fbfdb6d6087a10
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed collate

commit 4cf095e79a9cbe9a4028bb47c0faba9811ac50d5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    renamed R/latex_table.R to R/summatize.R to reflect changes in code

commit b3abb85e8e5d1a887813e57598cff39c7e78fd54
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added new tests for summary tables

commit 8db58d8d0512e017ea86ed9556169e4e315e4d10
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (summarize) changed warning that non-factor/factor variables are dropped to message

commit 27326e0c3a498419fcc0a71f1af5833c249dcc79
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    summarize now with improved code base
    added documentation for summarize, summarize_factor and summarize_numeric
    updated documentation for latex_table_xxx

commit a72accbf59dbb57afdf53f33feb82bc137da51b5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    continue clean-up and documentation

commit 839a1ed1004e471daf3cf58194a600bfbeb0dc82
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    started to reflect changes in manual

commit fd4d00069c8a18a3ca56e00c071bc817c9b3ae5b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    renamed table to summarize

commit 826c01f8e2ce57583f602de76651b844add7900b
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex_table.R) fixed xtable method

commit 83b43ca06210fcc2544d13939f69a663c43926a1
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex_table.R) started experimental version of xtable method

commit b040cc5a5f51d7b7b5f196b2e52dca60979e9b69
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    tables are now fixed (closes #3)

commit 1ca23df374354cb152393082eba13f725e0b0190
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added .gitignore

commit a4b3e1d39a205a4be0e54495ee5875474de9b749
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    new interface for summary tables now essentially working
    - print.table.xxx removed
    - changed get_options to get_option
    - changed add_options to set_options
    - added table, table.default and table.data.frame

commit d9d10b4dc5813fc65b93fa931d536d0e27c75d36
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex.table.xxx) fixed handling of missing values in group

commit d8f1bafbe8aaa7a136b5aaf8c7962c00d09d99b6
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex.table.xxx) fixed handling of strings as argument to test

commit 5d29106e45cd2b9403b93cccdb9c3feef0e72be5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    (latex.table.fac) fisher test now ignores missing values

commit 86d2d5161ecbc7f19834a9ec9dd136609f1c3c54
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    experimental new version of latex tables
    - make table a generic function
    - table.numeric (was table.cont) and table.factor (was table.fac) now are generich functions

commit 149c5e9a779f135b151fabd61b5222cb90fd542d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit 4970f173f96c062b34cac15ed2d613abb43fa315
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    defined summary.labeled.data.frame

commit 6809d690da05bb4d990abc9ccfaa351bc380ba0c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    renamed "options" attribute for summary tables
    latex.table.options --> table.options

commit f43c02c7b94b6dd04a80a1cf8aefee2922487dce
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    renamed print.table.xxx to prettify.table.xxx

commit 65772890708ceea0a08676294f6d4daba2bd678e
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    start experimental version for better summary tables

commit 4499a4aefdc1c9daf97fb79824b75e68d25d85b2
Author: unknown <Benjamin@imbe81.uni-erlangen.de>

    documented new arguments test, percentage, cumulative, ...

commit 9b56159ecd0a0dce25432f1a6599f170d44a014d
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated DESCRIPTION and NEWS.Rd

commit cf3a3d5892caad29094bff7335912ae8e44e3eec
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added CITATION file

commit 38881a182e6c839410be63714140897f6755500c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    started to prepare a new release

commit de9dc6b7540c55fbd56a9441aab12d9eeb4c90eb
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit 18417dd761391f72231bd1827e4fb0f79b2c9bb0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    changed default of latex.table.fac to digits = 3

commit 8ea96a0713228f8281a7aca53036a7454f710a1f
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    changed default of latex.table.fac to percent = TRUE

commit 925a02f4ada37229c9cdf4089c178280b5354f1c
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added tests to latex.table.cont for grouped data

commit 2457753785cd8d85b2efaf88a10990ddc82192dd
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed formating of p-value and percentage in latex.table.fac

commit e25a7fd72391a06bed0e149cdd53452c1e147598
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added option to display fractions or percentages

commit be7ffde7ef25ccd8adafef5693e2908e26320a0a
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed formating of p-value in latex.table.fac

commit 43aa2078360a26a56347a29e0fad686ba0105afb
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed bug with factor levels

commit 871659ae629b4ae37d54291d12732d2679349c87
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    improved output of p-values

commit 475b7da7600f4f1fdeda00f2da87046f01c6a4fe
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed computation of p-values and improved output

commit 935e3088ead66ecc42cb9b6dd168fd45f50b3142
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    added p-values to grouped versions of latex.table.fac

commit 5118e0d794d1df8dda5ae1da7c406e49cfa50009
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    latex.table.fac() now supports more than 2 groups

commit 76e49c80e1c68e465d0db8c828284b0e0ccbfe62
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    updated release SOPs

commit 77f403a9bcacd982896f9d66a466ca43e1c167a2
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    fixed handling of levels()

commit 1bba2510ed1900483eebd97e4b025a133d0ad1d0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    new version of latex.table.fac started that allows a better display of grouped statistics

commit 330432882981db0d341177d3828872102f6f6d17
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Updated DESCRIPTION
     - "Title:" now in title case
     - "Description:" extended

commit 431f7f014068aba66261fb57b94d5184b0a49600
Merge: 2244c8f 1a1bc07
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Merge branch 'master' of github.com:hofnerb/papeR

commit 1a1bc079ce798959c6022057618a2d261b0860cf
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update .travis.yml

commit 8ee73aaec9853b91778efc99f230e3b15f789fb5
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update .travis.yml

commit 2244c8f765345c4d7bd9349dcfb69a6f658efead
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Fixed .Rbuildignore

commit 3c49c02ac226e6c0e99854468a254c26ead4e696
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Update README.md

commit cc6bd90b901456d4f13ef8415195810078bf90c0
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    Create README.md

commit e0ae53ca0a467a977c8f58c30bb27966575c6cbc
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    enable continuous integration via craigcitro/r-travis

commit 6b9c09238e76edd4d839a03ed53cbfeca63e25cf
Author: Benjamin Hofner <benjamin.hofner@fau.de>

    removed pkg subdirectory

commit c2fe83c873bcf1aea92f1b803f39dcfb686057a9
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - small changes in SOP

commit d54f93573cf990b3f20f38d99f4332940cf3cfd5
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    Release papeR 0.5-0:
    - moved nlme, lme4 and survial from "Depends" to "Enhances"
    - reflext this in tests and manuals by only executing the code
      conditionally on the availability of the packages
    - some small fixes in prettify.Rd
    - updated ChangeLog

commit 03662cbc99079ef8fcf0013d2766a0e7d7f8b803
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - additions to NEWS.Rd
    - minor changes in manual

commit b913f034a59ffe4d949eee61bbed42f0c314e7ed
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - change plot(data, ...) to plot(x, ...) to make generic happy

commit aa375fea214135c68b2c73c7f960ebe2f0977d01
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - started preparing a new release version papeR 0.5-0

commit d439505cbecd4d2396a016775d69d824d1cce815
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - Changed plain text \file{NEWS} to \file{inst/NEWS.Rd}
    - Updated SOPs

commit ce0a1b1a1bf88df6aa14654b789680ed1979f742
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - fixed bug in toLatex.sessionInfo(, citations = FALSE)
      (spotted by Brian S. Diggs <brian.s.diggs __at__ gmail.com>)

commit ffa356eee337ab31eb2e525902216aab9c6f287d
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - strongly improved plot function

commit 901bf564e692d0f05e306b4977a5d83e5b15ec74
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - add plot method to NAMESPACE
    - export some of the labeled.data.frame functions

commit f1c7a492d4a4591bce5c1f542346f8a85b06ce85
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    release papeR 0.4-0
    - added .Rbuildignore
    - minor changes in tests and examples
    - updated release SOPs

commit 1af4b5a89a189d08d6e439c57a26ab6eaa7ca8d0
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added helper script for package preparation

commit 6a04fad16fa8cdd6d983adc96e08ee2dc043ea36
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - make lme4 >= 1.0 happy
    - minor bugfixes
    - changes in NAMESPACE and imports
    - added .Rout.save files

commit e093f8256f9c3dfb046353e00903ee8c9a825e30
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - included better handling of environments in prettify functions
      and checks if the data has changed
    - added SOPs for releasing package

commit a349b838fddd82d0f5e9c5b0bc8c048bf511d686
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - better guessing and handling of environments for model refitting
    - experimental version of environments for coxph and lmer models
    - users can now specify confidence intervals directly via confint, e.g.
        prettify(summary(mod), confint = confint(mod))
      This helps to in case of environment problems.
      In this case, labels should also be user-specified!
    - added first tests

commit 4caa7861f534bfba1560d030841eb237bc5bc1fe
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - updated news file with missing items (for version 0.3)
    - included (experimental) version of prettify.summary.merMod
      to make lme4 (>= 1.0.0) happy

commit 402d1bc27ab96928164cae4b3e57b42461746fee
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - improvement/bugfix in rbind.labeled.data.frame()
    - bugfix in is.labeled.data.frame()
    - improvement of toLatex.sessionInfo()
    - numerous improvements in manuals
    - added missing items to NAMESPACE

commit 6339b2a5d55313c7a6307b78d9780f7e361a518c
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    release 0.3 to CRAN

commit 24f75549f25f7efc1e05e848caab15582bf5da0d
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - added plot function for labeled.data.frame objects that
      allows for univariate plots and grouped, bivariate plots

commit 17da582ea072c7d911bcafbf32bc560e65dd7829
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - added NEWS and ChangeLog
    - started preparation of release candidate
    - increased version to 0.3

commit 5f6108cad442e538d016eae4cfa77960acab16c5
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    minor changes
    peparations for release candidate

commit 94ebd36150c11d4458db291965262035720b8d3a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - fixed bug in prettify.summary.coxph (labels were not correctly guessed)
    - changed default to x[..., drop = TRUE] for labeled.data.frame

commit e67cf294ac8698cd5e609dde69c224f0e08928e4
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added missing file

commit 6cc517a23edf768aaf001a802cf862c50b44777a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - removed summary_fixef
      (better results can be achieved using prettify() on summaries from random effects models)
    - added confint functions for mixed models
    - added function is.labeled.data.frame
    - added documentation for new functions and for extraction and subset functions
      for 'labeled.data.frame's

commit f64d93679667a4119a884af521e3e1569f43c502
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    - defined new class "labeled.data.frame" with special
      subset, cbind and rbind function (to keep labels when changing data set)
    - new function as.labeled.data.frame
    - new prettify function for summary.coxph
    - new toLatex function for sessionInfo()
      [with nicer results than the default function: e.g. citations included]

commit 282a01454f0b557356f7476399d2110dea87f84b
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added prettify methods for lme and mer summaries
    lots of improvements in prettify

commit a5bce19382f3afa4ef06fd4a06286905b1ab87e3
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    bugfix in labels(..., abbreviate = TRUE)
    added prettify.anova for Anova and anova results
    refactored code in prettify
    latex.tables.XXX now with argument labels = TRUE for easy labeling

commit 1fa8a93a083a906e895d4f49055683a10e221a90
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    add manual for toLatex.character

commit 313ecb30b9e9999cafeaa29eb3fb9bc208729039
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    make checks happy
    include significance stars
    improved manuals

commit 364b21019f35b403c45440f26719362792b8c1a5
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    improved prettify
    bugfix in latex.table.fac
    increased version to 0.2

commit 2c2565010c70c75f4e164783d52410b09afcecbd
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    new prettify function for summary.glm
    improved prettify function for summary.lm

commit 8809d262cf9e2ff6906c391e43fb62d91308326c
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added toLatex function to sanitize R output for usage within latex
    added automatic sanitization to latex.table functions

commit a45c29dc1f8a7771a383a3dfcc6ac28964ffe53e
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added prettify method for summary.lm objects

commit 40ba1a1d332ae95096777f81657f70d3f5660346
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    improved label handling when data set is alterd (e.g. variables dropped, added or renamed)

commit d0dc4dbd596c58b77c512840e18a42e62954367e
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    first implementation of grouped statistics in latex.table.XXX

commit f6781f764cded072d8c91709ba8380713b2b76f1
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added level argument to summary.fixef
    fixed example

commit 78dba76781e5aae30d09d742f17195be98d98ae7
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    changes in labels():
    - don't set labels to NA
    - export labels.data.frame
    - report which labels are not matching (if any)

commit 502d52afafe33edcd7d62812e18116ebefd00bed
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added confidence intervals to summary_fixef functions

commit 8c4ea546f8046850eb1d9551967b67bd1886a029
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added missing manual for get_options
    added functions to extract confidence intervals for mixed models

commit 54ced2b7a54fbd95cb6b62db9f33ad1d6cbccb34
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    refactored code in latex.table.xxx functions
    new arguments caption, label and center in latex.table.xxx function

commit c2c6e41e94a2fb85e57dc25995adb676ebe6d271
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added labels to latex.table functions
    try to fix lme4 error ("summary not exported")

commit 5b8fa7bd90ae07e427ee6f71255892dc114d5337
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    improvements in latex.table functions:
    - new print functions
    - other internal changes
    bug in summary.fixef now really fixed

commit 5f722640ac5093173767243584acfb4e2abfa1ea
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    restructure code

commit ae6221f80ec6b5348db3ad97564851c1e6cfa7ae
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    fixed problems with latex.table.cont (with only one variable)

commit 156c71280ed146438b49471543106bc32817b61a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added new arguments to latex.table functions
    added examples for latex.table and summary.fixef
    bugfix in summary.fixef: used to terminate when no p-value present

commit b61dc1740110093c879a013f22da0657403bc7bc
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    summary.fixef: small improvements in display of p-values

commit 8c21c72396531cd3f760183ba7deea6823665d77
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    removed default files from project

commit 32c860bd86df6febabf24cfc47aba91f41aaa005
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    added prettify function to improve summary tables
    improved summary.fixef functions

commit 97acc169ec32f66077df2325bc57e0d791caa0e8
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>

    initialization
