6af9cfaf9ad5aafc5425f4f9ff992fc2 *DESCRIPTION
278222bda7bb14c19fd709279d2f67f6 *NAMESPACE
3ac41f167500b6aee1a41c003e15adfe *R/BFGS_special.R
ea50b3e974cd35f735ce9da626a864bc *R/active_design.R
ccdbb24878c176c1bf9443453000332a *R/add_infinitesimal.R
69c02d65d18aaf255d60e1342bdbe90c *R/add_noise.R
eb1011ef73f492b8635b96e4134acde0 *R/armijo.R
4ea4e8916535cb6610a4a85f30c181d8 *R/bed-internal.R
6e170d5a2d5deca94b0bddab9b6e1fdb *R/compute_gradient.R
d1dd36a6e071283b59042eb1d35b3d90 *R/compute_gradient_coordinate.R
133890e59f4c15a45f0be4b3af19efd5 *R/compute_mean_risks.R
01bee36f11852cbd30a9fbd2c0d88153 *R/dmvnorm.R
ba150ab60993bb31dd3a1f688293e2eb *R/dream6_design.R
c40beb7bc1393ea96538c3f9aff974fb *R/estimate_risk_dream6.R
e6b73e46b35c9419c2a20011a3b6aa22 *R/estimate_risk_out_all.R
d493368a8d9b8eb238f0698df42c6023 *R/eval_kn_log_like.R
b541c51f433405244d59c4f380b4f6a8 *R/eval_log_like_knobj.R
c01f2042e79166085293793bb962c081 *R/generate_our_knowledge.R
868f84f6304d2876c397b14de41e13b4 *R/generate_sample.R
5f6faf32e35d82bb310ae35d90d44c1c *R/log_likelihood.R
95615e69a63756072a88f7c3b9c443f3 *R/log_normalize.R
81322f425f2b6560fde2e810f420a30b *R/log_prior.R
3c31ba0a26ccd3d0fb653342357550c1 *R/proj_grad.R
ea1461d2984e4908cd4fc39a8837252e *R/random_design.R
b8e619b059e858bd29cf1b81ef31e744 *R/read_knobjs.R
1301f67e906acc530d13637377435fb4 *R/reverse_params.R
b9e3b37fcfa0fbf8166384367ea8919c *R/risk_theta_fun.R
38c022eadbba2598c526e29ed435094c *R/risk_theta_vect.R
f3f6d3d69be934797c742de12c05155e *R/sample_function.R
e20a86650d3955f474f4e3fae8520619 *R/sample_function_multi_mod_weight.R
dd346b6c9e6e7f991771b7c15c454566 *R/sample_function_single_mod.R
403aaf617ddd409b2733a927c89754ab *R/simulate_experiment.R
bae244845a1b2f2b758c6690ff258df9 *R/simulate_experiment_no_transform.R
e6d4c1e3d6c627baea73da77de427b9c *R/transform_params.R
47c1db671cea5c9f8897aecc3e185dc0 *build/vignette.rds
742ca3571fbcbccac74f7ed216ef9581 *data/datalist
ce00a2d03384d94f100a6f35e46963a1 *data/experiment_list1.rda
4482ed665054da92afb7e9cc61ff1a42 *data/exps.rda
8304663960da22aef78ef2a46b69de6b *data/knobjs.rda
efedc05a2cc7394d4c4661b19f8f0b82 *data/observables.rda
36de5403645edc028165f33d4ec055ef *inst/doc/pauwels2014.R
512d898906f28bcb4d1a2f521060b8d7 *inst/doc/pauwels2014.Rnw
085f2685a24ec38ee14addcbe2897524 *inst/doc/pauwels2014.pdf
c0fc476aef3979abc667875ab87ef693 *man/BFGS_special.Rd
b9f984c20058988a0a67f572bb080bce *man/active_design.Rd
3e71bd1ccbe82407aa7d986ba8f3140f *man/add_infinitesimal.Rd
73913c0bb7608512d0f652353a06702c *man/add_noise.Rd
869d92b6c9882e7b99c10b4616aea0d2 *man/armijo.Rd
a25e71a9cb5510a96a79d7053b9a9c7c *man/compute_gradient.Rd
b599f0a0842138609f05ccb3ac91b7ab *man/compute_gradient_coordinate.Rd
781530d56889388cc229f369a8bb1886 *man/compute_mean_risks.Rd
efa21b32ca034903547476583a2eb59b *man/dmvnorm.Rd
0e7e29bf6bb75eb695445da0d6a42757 *man/dream6_design.Rd
f8759473a663d877c1ec9fe01179ad8b *man/estimate_risk_dream6.Rd
dd733dc953578a761fff021343cbc617 *man/estimate_risk_out_all.Rd
934dbf230a265f18f038129fda8f9ee6 *man/eval_kn_log_like.Rd
b7c9f44b15e3f1f70a7663128e74c789 *man/eval_log_like_knobj.Rd
95ccc7f389484659aba80f4041fc6e8a *man/experiment_list1.Rd
302c3dba8ec5d99b8ea01669df189cf1 *man/exps.Rd
f13e62592ce83f748e2f60b77123c3dc *man/generate_our_knowledge.Rd
ba64c38dfe2f377ee087fa05805fa4ef *man/generate_sample.Rd
c80daaf18ab5402213959f42398087cb *man/knobjs.Rd
ce61b814a7a4d286984787004f844107 *man/log_likelihood.Rd
a900c24b91a79b279543edf08a1a55da *man/log_normalize.Rd
37c55672af75bdeab671b6e63141aa6c *man/log_prior.Rd
c6f8228bfcba8968b5c011473de9ad1f *man/observables.Rd
930d03d29f41892a52978d3a25cd5e27 *man/pauwels2014-package.Rd
0be7e7f111be8f05979477466ac6744c *man/proj_grad.Rd
6caddc2f36af8d614eb47410e4315da0 *man/random_design.Rd
79a9400973431d9c970c0b014e2f388b *man/read_knobjs.Rd
1231b1073105abb017f5f02b51683794 *man/reverse_params.Rd
8f14de7f353218d04f3dec1506aba25f *man/risk_theta_fun.Rd
486808abfc58ffc24993e8b294ca3b10 *man/risk_theta_vect.Rd
6c8fd9f8c1f91b8f96514c5d65009ce0 *man/sample_function.Rd
909f4fe1f75a54012dfef1ae8c841ee0 *man/sample_function_multi_mod_weight.Rd
9d1a3ea090b9714e11d903075c98bd78 *man/sample_function_single_mod.Rd
d6c8257438b7c383aa67bcea13d9d2c9 *man/simulate_experiment.Rd
dab141099c7d375f7c8a61d34b03dd48 *man/simulate_experiment_no_transform.Rd
b2f162fe809c53093f84f3cf90621cfb *man/transform_params.Rd
02c7f82a5ed7a3d4ed82235e0e71ae9e *src/model0_simplified_mrna_rates.c
8c6cd9e3647432c6ed2682cb2be21547 *src/src.c
512d898906f28bcb4d1a2f521060b8d7 *vignettes/pauwels2014.Rnw
2ba63f4b6f7d0ac2110a27437d3a3580 *vignettes/refs.bib
