595b35d8cbcad28d1c4745763f64701e *DESCRIPTION
b33eb3f89882c789c2234ff0daae9ddf *NAMESPACE
be780224af27563b173bb16d2a5e3c4a *NEWS.md
786c3b150442bb84f01003d8848ef181 *R/RcppExports.R
298bd5a2036ca8c60bd1438ebc301d8e *R/bed2matrix.R
3ada5a4b985bf7724d05c939358ca81a *R/iram.R
d926a21fb1e62587cf8bfe466a229a56 *R/pcadapt.R
1b7234990bdfd451bbfad6cd2791bddc *R/pcadaptRead.R
df08de38a9bf9da3b841ebe1c68082ad *R/pcadaptUtils.R
0ff29ca82473f427b38d43f819d4ebf0 *R/plotUtils.R
8e9c345d5f1e790a25e6d0344bdf54ee *R/vcfConverter.R
c2e8ff7f3bbe33e5d50ce393e402a87f *R/writebed.R
7d9662ecd9ec4c904c15c80fcdbd5087 *README.md
a15467185c05462b6d7a456ccfcad6bc *inst/CITATION
e5a6965b1c4faed24178d0ae8d14daa5 *inst/WORDLIST
ef4834e7f9855c5636f699d4fe3ce1ad *inst/extdata/SSMPG2017.rds
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.bed
9bf25f77311c895a0e0d4baf28e16293 *inst/extdata/geno3pops.bim
2733f83a057e300db098e4106883cfcb *inst/extdata/geno3pops.fam
34ff333489331f3ff7fc07cf4056301c *inst/extdata/geno3pops.lfmm
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.lfmm.bed
ae87c6365f14706eaf0eeec5db9a5661 *inst/extdata/geno3pops.pcadapt
77c27515f59471c0b126a380a0b1914d *inst/extdata/geno3pops.pcadapt.bed
45ceab72851bc26d57fda69a865a7b7c *inst/extdata/missing.bed
7c3e98fb1b047f5a7a62d2e5e7230af3 *inst/extdata/missing.bim
b9f7c6dbf0565733761fabf9b7efa29e *inst/extdata/missing.fam
e2617ee63db0562687d78307c8130b2b *inst/extdata/missing.lfmm
d190a2d03f4073611e0918f5a861ca0f *inst/extdata/missing.pcadapt
2573fb3ebb2c51aff2f623319d6891a4 *inst/extdata/pool3pops
572b2bc85fd6d6898d5a9e0579a8615b *inst/include/pcadapt/bed-acc.h
e69c3ce9e0ddaa827badf182aa34f6e0 *inst/include/pcadapt/mat-acc.h
81051bcc2cf1bedf378224b0a93e2877 *inst/shiny-examples/app-pcadapt/global.R
deb4cb10faf4b919b16efe25cc6e2f9f *inst/shiny-examples/app-pcadapt/rsconnect/shinyapps.io/keurcien/app-pcadapt.dcf
89d50fc09203439eb277e197af158994 *inst/shiny-examples/app-pcadapt/server.R
f4967d2b1b89416035939c386b200ef2 *inst/shiny-examples/app-pcadapt/server/tab-histogram.R
33056feda80665a798a37e30e045881d *inst/shiny-examples/app-pcadapt/server/tab-manhattan.R
9cfbf9dcdc3e46f24d13e9b784ed8322 *inst/shiny-examples/app-pcadapt/server/tab-outlier.R
e0d79ddfe69f78eb067bc395ad58931c *inst/shiny-examples/app-pcadapt/server/tab-pca.R
324dae0622526fa4ae10665ee9a4d970 *inst/shiny-examples/app-pcadapt/server/tab-rcommand.R
24ad4b2e2514ba82c1c7a5fd8ac4c4ed *inst/shiny-examples/app-pcadapt/server/tab-screeplot.R
1e60b8746dc4b2257a7cd581a96103e5 *inst/shiny-examples/app-pcadapt/ui.R
64a2eaf2d96a6dd5ee0fa596206d5c3a *inst/shiny-examples/app-pcadapt/ui/helpers.R
521d97f51be45f06253e5d51da4bf923 *inst/shiny-examples/app-pcadapt/ui/tab-histogram.R
8201d4a175807a029497bb7f20fa61d5 *inst/shiny-examples/app-pcadapt/ui/tab-introgression.R
afbad398c7931873dcf92a21827daa55 *inst/shiny-examples/app-pcadapt/ui/tab-local-adaptation.R
5d63a8f1d8fc602bf994152119e7f38b *inst/shiny-examples/app-pcadapt/ui/tab-manhattan.R
91f735f881fc76bbd45b420420e093fd *inst/shiny-examples/app-pcadapt/ui/tab-outlier.R
c78a09489a95af16c38830115f86d879 *inst/shiny-examples/app-pcadapt/ui/tab-pca.R
1cac662c7f39c5aa6d129d73d70adc60 *inst/shiny-examples/app-pcadapt/ui/tab-rcommand.R
fe090afb4615a916e9fdbe3c3969312f *inst/shiny-examples/app-pcadapt/ui/tab-screeplot.R
f5d7cbb2568fda60c030ce71370f3329 *inst/shiny-examples/app-pcadapt/www/busy.js
fe4c379e56e149f06b739144a0e487a2 *inst/shiny-examples/app-pcadapt/www/style.css
18ee71478d1efa978e7828c722160a0f *inst/testdata/full.rds
ceab40bc0cd7933c3aafb55928f0271e *inst/testdata/novar.bed
9b8370c0de749416d065d8697dd5f4d7 *inst/testdata/novar.bim
b9f7c6dbf0565733761fabf9b7efa29e *inst/testdata/novar.fam
764264ea2b95868265f0f37043d5b669 *inst/testdata/pcadapt_v3.rds
ea4493f2a0e1ed27c1e8eb064d960cfb *inst/testdata/to-compare.rds
bffb4dea95f6bc376af2cc59ffe63866 *man/bed2matrix.Rd
17cad6233f8c7bdd4d66d50bd8514213 *man/get.pc.Rd
10a129f68051f806d716e173b72da8b6 *man/get.pop.names.Rd
f744a04f002c8a2ec63f84f16d1e15d2 *man/get.score.color.Rd
df5b5d799768523506a37977e45eb898 *man/get_statistics.Rd
28fea75c4a078a6038bfca9da327ff32 *man/hist_plot.Rd
8d683a9b4252b48653be868aea88fa0a *man/manhattan_plot.Rd
710be68f3c11e91f84cfc583f9369542 *man/pcadapt.Rd
534cbcd1df0161dde27e262efd5a6831 *man/ped2pcadapt.Rd
7eae0eda456d1b5d96666c7be3ae24bf *man/plot.pcadapt.Rd
471bcfd5a1068150126917a4bb551514 *man/print_convert.Rd
4a2ea338c74637a1d2d3c2f05d245dd5 *man/qq_plot.Rd
05bc7414600c6d22671246bc690cfbf6 *man/read.pcadapt.Rd
bdc15896e15fc148bfbdaee1d339c83e *man/run.pcadapt.Rd
3d2b217094b066e327f41f4c51e01ab1 *man/score_plot.Rd
814f8bd84b645142fec27879cdfb8184 *man/scree_plot.Rd
53869ef602d7b53f83cdae63373c1640 *man/vcf2pcadapt.Rd
a818b8415b3c286974c54ae91479ad89 *man/vcf_convert.Rd
858c7ba0b9226b26fc62a56d10273265 *man/writeBed.Rd
ada3d029ff147029771b315fc0c44487 *src/Makevars
0464a4598c8b9efc62e0ef70b8a1bc13 *src/RcppExports.cpp
b6c8bb1980870882577bbfd691194929 *src/af.cpp
6e7482a43b6f9fa01ab9ab9366a389d4 *src/bed-acc-xptr.cpp
f9cf5c3bb3b956fae98472e61c0493e3 *src/bed2matrix.cpp
f6f5562084bdba6afaff1089ebf9dadc *src/clumping.cpp
3f534ce91a063d14483cc437a9be78b8 *src/linear-regression.cpp
04c155365d5f642e73dcd8dbe7952e31 *src/nb-na.cpp
86ddd6a80062ec7995e37fb24fd25e61 *src/pedUtils.cpp
52ed4a43d48ed4e0e7464ff28ed04bd6 *src/prodMat.cpp
baf7a4816bf1290f251ddeb1177f2041 *src/vcfUtils.cpp
69884dd90df384463115ecb2c29b34f8 *src/writebed.cpp
