Package: pez
Type: Package
Title: Phylogenetics for the Environmental Sciences
Version: 1.2-4
Author: William D. Pearse, Marc W. Cadotte, Jeannine Cavender-Bares,
    Anthony R. Ives, Caroline Tucker, Steve C. Walker, Matthew R. Helmus
Maintainer: William D. Pearse <will.pearse@gmail.com>
Description: Eco-phylogenetic and community phylogenetic analyses.
    Keeps community ecological and phylogenetic data matched up and
    comparable using 'comparative.comm' objects. Wrappers for common
    community phylogenetic indices ('pez.shape', 'pez.evenness',
    'pez.dispersion', and 'pez.dissimilarity' metrics). Implementation
    of Cavender-Bares (2004) correlation of phylogenetic and
    ecological matrices ('fingerprint.regression'). Phylogenetic
    Generalised Linear Mixed Models (PGLMMs; 'pglmm') following Ives &
    Helmus (2011) and Rafferty & Ives (2013). Simulation of null
    assemblages, traits, and phylogenies ('scape', 'sim.meta.comm').
License: GPL-3
VignetteBuilder: knitr
Suggests: knitr (>= 1.6), lme4 (>= 1.1-7), formatR (>= 1.7)
Imports: caper (>= 0.5-2), picante (>= 1.6-2), quantreg (>= 5.05),
        mvtnorm (>= 1.0-0), vegan (>= 2.0-10), ade4 (>= 1.6-2), FD (>=
        1.0-12), Matrix (>= 1.1-4), methods (>= 3.1.0), animation (>=
        2.4-0), phytools (>= 0.6-60)
Depends: ape (>= 3.1-4)
RoxygenNote: 7.1.2
NeedsCompilation: no
Repository: CRAN
Packaged: 2022-08-31 16:05:27 UTC; will
Date/Publication: 2022-08-31 18:00:02 UTC
