ef756c7d6da3ae369ea2dac979fcc0a3 *DESCRIPTION
17bbb85335ee079cdf268c500b78b653 *NAMESPACE
795c02ca8945a54b962bed40c87a167a *NEWS
089e48708c70fb9147df49545558edc7 *R/phylo.R
772d3c5dcd42134b162bbf1dfd2f9801 *R/sysdata.rda
8a77580bcfdc60e0a76f608815d83c69 *Thanks
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
4b269c2e640293341b9b1c04d4dd7f4e *data/chloroplast.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
b4d3fa3f40aae3a68846d1f28274e9a0 *inst/CITATION
914e262b6abe7fdcd5b0e38a20ba8569 *inst/doc/Ancestral.Rnw
d77c19dfbb3c7656ecaa80982ee2ddb0 *inst/doc/Ancestral.pdf
a8a8bd66687fad6ebdb2736753a6624a *inst/doc/Trees.Rnw
a4a273803718487d5a9cd584d2651621 *inst/doc/Trees.pdf
6af5f4d4c2e93469cc19d46a97ab5d0f *inst/doc/exdna.txt
41f0826819e1c9ae84e0e2a18d2d0c1c *inst/doc/phangorn-specials.Rnw
2bd4333a5aa30800209bbcb57406032b *inst/doc/phangorn-specials.pdf
2fa7c462ea9a9bec40340ad93c3599a0 *inst/doc/phangorn.bib
d3069d1eff9e70bed655b8962bf4ee2b *inst/doc/primates.dna
fdc1176d0c0f2db3de1c9dfd83d3c070 *inst/extdata/MtZoa.dat
fc090d051ce4f18b937448a254e2764e *inst/extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *inst/extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *inst/extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *inst/extdata/lg.dat
917303a3df098f9137c651de0afa78fa *inst/extdata/mtArt.dat
1cd5e39670b86d32b5fe5c27dcc79648 *inst/extdata/mtREV24.dat
0ca0d0e987fcebf847a876779eddd934 *inst/extdata/mtmam.dat
87fa1533c4dfe7074237cfa2196bcbeb *inst/extdata/wag.dat
9e8ce60b84f8598759434b439b57b3c4 *man/Ancestors.Rd
bda5669b71de975e1309d909c495b71f *man/Laurasiatherian.Rd
bce6a89bcd34f8d4549a053392699217 *man/NJ.Rd
25c3d54a0729c27773a4ce00d6b29a4a *man/SH.test.Rd
6403c950d8f9700d3fe1c847970461ef *man/allTrees.Rd
a1dba092326f955559e005db7ca08651 *man/ancestral.pml.Rd
573f2589e5925533ca28f6c5327bebae *man/as.splits.Rd
c080fc44f1f3101ea84d86b3d4932f17 *man/bab.Rd
b75bb6cfff9f9a1ac1acfcd126012975 *man/bootstrap.pml.Rd
22ad0ef60c2edd8b3d003f170f2fa15a *man/chloroplast.Rd
cec4d81c2d2d1be45e64ddbd47fcea66 *man/consensusNet.Rd
20f30cceced0e7188e76e70b4c947a32 *man/designTree.Rd
924c4e906042d64ac4fc4907af8c6cf1 *man/dfactorial.Rd
00c8f01967f23f9904874a6859d0053b *man/dist.hamming.Rd
dbc23facc26a85fbc08711c754894cbb *man/distanceHadamard.Rd
72abceeb247f22b3da6560df0c20468a *man/getClans.Rd
f62c5014070a1478e9dade5992d31c6d *man/hadamard.Rd
0fc6883684d475036889685ed2489d56 *man/lento.Rd
77e0c0a9f38a6457caee9c005a51072e *man/midpoint.Rd
1cfe141fa2121a5cceac9f18a09c0b7d *man/modelTest.Rd
9734364abdb5d0122e1b4850d03b6d18 *man/nni.Rd
ac6a3b34d89a829f33b63e35d49dcf69 *man/parsimony.Rd
06d3770fff0d07f19393875735cfa004 *man/phangorn-package.Rd
bb367870392780379db06aca04fc45d5 *man/phyDat.Rd
24a45682921320eb2bdfaf6fd4302b3e *man/plot.networx.Rd
4aa1316c7cedff366870f9e3e803a6ac *man/pml.Rd
b0d9d6253249602e80d66bc1b721b6ea *man/pmlCluster.Rd
7bd070927d33fd43d9fc57ba82ce1cca *man/pmlMix.Rd
cb81d669bba0d3248f4d04ba19daa3cb *man/pmlPart.Rd
18fb589c1c09c9a494098a6d04d3dbad *man/read.aa.Rd
4e058643bd5171e08ef7dff5a3bf9f3e *man/simSeq.Rd
9a50832f0097b8399f83d65b34937f76 *man/splitsNetwork.Rd
6c36eee241785d02e58e26d735f6306b *man/treedist.Rd
2524cf3feb8c137f2b11f351e983a9fc *man/upgma.Rd
b97649fe8b91a0632a1ded89a6f43125 *man/yeast.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
97e3c8d7330adec1e9da312b1676817c *src/init.c
c17400de8d81d02ad75caaeb3731ab79 *src/phangorn.c
285fa198f023bb77da392d1e52a43266 *src/phangorn.h
