a99498995030de6e0976547435682e5a *DESCRIPTION
91a6b5081d3ffb8adb02c944f109bb66 *NAMESPACE
8047c9dee5e8abd806582f91167f19a9 *NEWS
4a1fcf88e8d6a8237c240b6364b3d663 *R/Coalescent.R
88a96a662a8e491bf45661466250d0a1 *R/Densi.R
3b077a81fce3e280f3b49b585e521919 *R/MultiSpeciesCoalescent.R
db718843face57068ea5d842cccc22e2 *R/clanistic.R
fcb3b40dae678594f6907293fd9a09a1 *R/distSeq.R
32cdc37439abeaf3c61a6b0cbdc06f99 *R/fitch.R
5af6fdce3f68e5d81f04b9605c6e0b16 *R/networx.R
e70aed61de19a567d95205afa0a24f35 *R/parsimony.R
76a984c5587271b4737ca4aa9011e59e *R/phyDat.R
9e541076e06a08a9940bd4d858648b19 *R/phylo.R
b94cffafb9d7f49bfa85a2fe13ef1527 *R/sankoff.R
224f726965a5ca53452de7e829e8ad33 *R/sysdata.rda
aa176f2abd28d8f4d69e497d8aa78832 *R/treeManipulation.R
d81e347a004feaf0621d907a8c90f62c *R/zzz.R
0319d13ce0b3301bb6a4bc4ad08b4bf7 *Thanks
4a92b07bcd170e85bd237e460acafa93 *data/Laurasiatherian.RData
4b269c2e640293341b9b1c04d4dd7f4e *data/chloroplast.RData
19f84425e8caaf9f605490cdff17dd81 *data/yeast.RData
b4d3fa3f40aae3a68846d1f28274e9a0 *inst/CITATION
b68d79ab62b5da47d1ceda2567c31ba6 *inst/doc/Ancestral.Rnw
b429ae0fccba66a176a0666b06ecbe3f *inst/doc/Ancestral.pdf
10958186df7d96a454158072e5d5d668 *inst/doc/Trees.Rnw
49d1e740c03a2c7580c2f11081e662bd *inst/doc/Trees.pdf
2ba3103cd13457beddcfba7d60c23cf3 *inst/doc/phangorn-specials.Rnw
de1bc5ccf9b68bcee8c71b75aa6b86c0 *inst/doc/phangorn-specials.pdf
416ec316b19570d63337e736b8f782ec *inst/extdata/Blosum62.dat
3ee61cb2acbc5f8d9b27af3fdecbef26 *inst/extdata/Dayhoff.dat
5aa357dab0e72b27023e4302bc37dbad *inst/extdata/FLU.dat
b3309f2aa417a871ee85ca73eeed1165 *inst/extdata/HIVb.dat
f42b8125d97ea69253922ba9268f8ea4 *inst/extdata/HIVw.dat
d0692f34999a6b2d36d3088555b28cdc *inst/extdata/JTT.dat
fdc1176d0c0f2db3de1c9dfd83d3c070 *inst/extdata/MtZoa.dat
345e40cdde4ca5d9c08da0fb460681cc *inst/extdata/RtREV.dat
38b9f4551a7ff6098f29fee458aecc72 *inst/extdata/VT.dat
fc090d051ce4f18b937448a254e2764e *inst/extdata/cpREV.dat
50c707c26bf9015b37670f15d5e1c14b *inst/extdata/dayhoff-dcmut.dat
6da24109959f0c7a7db50c8db78d5d42 *inst/extdata/jtt-dcmut.dat
ddc4bd45521cd72848aaf2f79b90ac6e *inst/extdata/lg.dat
917303a3df098f9137c651de0afa78fa *inst/extdata/mtArt.dat
1cd5e39670b86d32b5fe5c27dcc79648 *inst/extdata/mtREV24.dat
0ca0d0e987fcebf847a876779eddd934 *inst/extdata/mtmam.dat
87fa1533c4dfe7074237cfa2196bcbeb *inst/extdata/wag.dat
985da8b17504af26eff230a7160f208e *man/Ancestors.Rd
bda5669b71de975e1309d909c495b71f *man/Laurasiatherian.Rd
bc55c4fc38cf7210b54fd801c6c678f3 *man/NJ.Rd
e499b3bd5f3315d187531c99bd776d9f *man/SH.test.Rd
6403c950d8f9700d3fe1c847970461ef *man/allTrees.Rd
b2e1d318b90dd0affa07e2247d563f9a *man/ancestral.pml.Rd
573f2589e5925533ca28f6c5327bebae *man/as.splits.Rd
c080fc44f1f3101ea84d86b3d4932f17 *man/bab.Rd
5161e487b48f8616403f7bfe182fe3ed *man/bootstrap.pml.Rd
22ad0ef60c2edd8b3d003f170f2fa15a *man/chloroplast.Rd
971cf91e07b150b2c7bff911881e37a4 *man/consensusNet.Rd
4acef41d5241a2a3eab44dcc5e416e03 *man/densiTree.Rd
20f30cceced0e7188e76e70b4c947a32 *man/designTree.Rd
924c4e906042d64ac4fc4907af8c6cf1 *man/dfactorial.Rd
d9f9faa9c4048b99a1c28b76d1f73ea7 *man/dist.hamming.Rd
dbc23facc26a85fbc08711c754894cbb *man/distanceHadamard.Rd
72abceeb247f22b3da6560df0c20468a *man/getClans.Rd
f62c5014070a1478e9dade5992d31c6d *man/hadamard.Rd
0fc6883684d475036889685ed2489d56 *man/lento.Rd
77e0c0a9f38a6457caee9c005a51072e *man/midpoint.Rd
1cfe141fa2121a5cceac9f18a09c0b7d *man/modelTest.Rd
9734364abdb5d0122e1b4850d03b6d18 *man/nni.Rd
5952fe0195b625ce8c9438dccd8e6854 *man/parsimony.Rd
06d3770fff0d07f19393875735cfa004 *man/phangorn-package.Rd
20ab2e9ecabe1d3cae7c499b02e92824 *man/phyDat.Rd
45989e0c54e13280e31db6fbba9e56c3 *man/plot.networx.Rd
4ceac32c9da8ad453a59af5bb211ff51 *man/pml.Rd
b0d9d6253249602e80d66bc1b721b6ea *man/pmlCluster.Rd
6e90cc0d0d5a71888c18d90394d25ade *man/pmlMix.Rd
825f7c9871c6e0f549fa9507ac04df7d *man/pmlPart.Rd
18fb589c1c09c9a494098a6d04d3dbad *man/read.aa.Rd
4e058643bd5171e08ef7dff5a3bf9f3e *man/simSeq.Rd
9a50832f0097b8399f83d65b34937f76 *man/splitsNetwork.Rd
49b9767fa7ff4ec6e42f79544c83cdc3 *man/superTree.Rd
6c36eee241785d02e58e26d735f6306b *man/treedist.Rd
64399c9fb7fb25d103c25aa925ab7a10 *man/upgma.Rd
b97649fe8b91a0632a1ded89a6f43125 *man/yeast.Rd
2fe54777ef94b0f00754efb64f497e0c *src/Makevars
4e4379f998848229647a8c4179088306 *src/fitch.c
8b26c022b8e8cf29a76995111cb3594f *src/init.c
a9279a836b929e91091ed54b759bcab3 *src/phangorn.c
01e77c208a52adcb276a0f6c725d601f *src/phangorn.h
10ddbbb2f3405e22eacb74e231c80e71 *src/sankoff.c
b68d79ab62b5da47d1ceda2567c31ba6 *vignettes/Ancestral.Rnw
9608eda76927e9438fa12a63ef8692cd *vignettes/Trees.RData
10958186df7d96a454158072e5d5d668 *vignettes/Trees.Rnw
6af5f4d4c2e93469cc19d46a97ab5d0f *vignettes/exdna.txt
2ba3103cd13457beddcfba7d60c23cf3 *vignettes/phangorn-specials.Rnw
7fd70773ea52ddf23bf9387657221ea4 *vignettes/phangorn.bib
d3069d1eff9e70bed655b8962bf4ee2b *vignettes/primates.dna
